Managing FAIR Knowledge Graphs as Polyglot Data End Points: A Benchmark based on the rdf2pg Framework and Plant Biology Data - Marco Brandizi; Carlos Bobed; Luca Garulli; Arné de Klerk; Keywan Hassani-Pak (CoRR, 2025)

Towards FAIRer Biological Knowledge Networks Using a Hybrid Linked Data and Graph Database Approach - Marco Brandizi; Ajit Singh; Christopher J. Rawlings; Keywan Hassani-Pak (J. Integr. Bioinform., 2018)

Getting the best of Linked Data and Property Graphs: rdf2neo and the KnetMiner use case - Marco Brandizi; Ajit Singh; Keywan Hassani-Pak (Proceedings of the 11th International Conference Semantic Web Applications and Tools for Life Sciences, SWAT4LS 2018, Antwerp, Belgium, December 3-6, 2018, 2018)

Orchestrating differential data access for translational research: a pilot implementation - Marco Brandizi; Olga Melnichuk; Raffael Bild; Florian Kohlmayer; Benedicto Rodriguez-Castro; Helmut Spengler; Klaus A. Kuhn; Wolfgang Kuchinke; Christian Ohmann; Timo Mustonen; Mikael Linden; Tommi H. Nyrönen; et al. (BMC Medical Informatics Decis. Mak., 2017)

ArrayExpress update - simplifying data submissions - Nikolay Kolesnikov; Emma Hastings; Maria Keays; Olga Melnichuk; Y. Amy Tang; Eleanor Williams; Miroslaw Dylag; Natalja Kurbatova; Marco Brandizi; Tony Burdett; Karyn Megy; Ekaterina Pilicheva; et al. (Nucleic Acids Res., 2015)

The EBI RDF platform: linked open data for the life sciences - Simon Jupp; James Malone; Jerven T. Bolleman; Marco Brandizi; Mark Davies; Leyla J. García; Anna Gaulton; Sebastien Gehant; Camille Laibe; Nicole Redaschi; Sarala M. Wimalaratne; Maria Jesus Martin; et al. (Bioinform., 2014)

Updates to BioSamples database at European Bioinformatics Institute - Adam Faulconbridge; Tony Burdett; Marco Brandizi; Mikhail Gostev; Rui Pedro Pereira; Drashtti Vasant; Ugis Sarkans; Alvis Brazma; Helen E. Parkinson (Nucleic Acids Res., 2014)

ArrayExpress update - trends in database growth and links to data analysis tools - Gabriella Rustici; Nikolay Kolesnikov; Marco Brandizi; Tony Burdett; Miroslaw Dylag; Ibrahim Emam; Anna Farne; Emma Hastings; Jon C. Ison; Maria Keays; Natalja Kurbatova; James Malone; et al. (Nucleic Acids Res., 2013)

graph2tab, a library to convert experimental workflow graphs into tabular formats - Marco Brandizi; Natalja Kurbatova; Ugis Sarkans; Philippe Rocca-Serra (Bioinform., 2012)

The BioSample Database (BioSD) at the European Bioinformatics Institute - Mikhail Gostev; Adam Faulconbridge; Marco Brandizi; Julio Fernandez-Banet; Ugis Sarkans; Alvis Brazma; Helen E. Parkinson (Nucleic Acids Res., 2012)

Knowledge sharing and collaboration in translational research, and the DC-THERA Directory - Andrea Splendiani; Michaela Gündel; Jonathan M. Austyn; Duccio Cavalieri; Ciro Scognamiglio; Marco Brandizi (Briefings Bioinform., 2011)

ArrayExpress update - an archive of microarray and high-throughput sequencing-based functional genomics experiments - Helen E. Parkinson; Ugis Sarkans; Nikolay Kolesnikov; Niran Abeygunawardena; Tony Burdett; Miroslaw Dylag; Ibrahim Emam; Anna Farne; Emma Hastings; Ele Holloway; Natalja Kurbatova; Margus Lukk; et al. (Nucleic Acids Res., 2011)

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level - Philippe Rocca-Serra; Marco Brandizi; Eamonn Maguire; Nataliya Sklyar; Chris F. Taylor; Kimberly Begley; Dawn Field; Stephen C. Harris; Winston Hide; Oliver Hofmann; Steffen Neumann; Peter Sterk; et al. (Bioinform., 2010)

ArrayExpress update - from an archive of functional genomics experiments to the atlas of gene expression - Helen E. Parkinson; Misha Kapushesky; Nikolay Kolesnikov; Gabriella Rustici; Mohammadreza Shojatalab; Niran Abeygunawardena; Hugo Bérubé; Miroslaw Dylag; Ibrahim Emam; Anna Farne; Ele Holloway; Margus Lukk; et al. (Nucleic Acids Res., 2009)

DC-THERA Directory, a Knowledge Management System for the support of the European Dendritic Cell Immunology Community - Marco Brandizi; Michaela Gündel; Ciro Scognamiglio; Andrea Splendiani (Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, Amsterdam, The Netherlands, November 20, 2009, 2009)

The DC-THERA Directory: A Knowledge Management System to Support Collaboration on Dendritic Cell and Immunology Research - Michaela Gündel; Ciro Scognamiglio; Marco Brandizi; Andrea Splendiani (Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences ( SWAT4LS ) Edinburgh, United Kingdom, November 28, 2008, 2008)

The Genopolis Microarray Database - Andrea Splendiani; Marco Brandizi; Gael Even; Ottavio Beretta; Norman Pavelka; Mattia Pelizzola; Manuel Mayhaus; Maria Foti; Giancarlo Mauri; Paola Ricciardi-Castagnoli (BMC Bioinform., 2007)