HumanMine: advanced data searching, analysis and cross-species comparison. - Lyne, Rachel; Bazaga, Adrián; Butano, Daniela; Contrino, Sergio; Heimbach, Joshua; Hu, Fengyuan; Kalderimis, Alex; Lyne, Mike; Reierskog, Kevin Herald; Stepan, Radek; Sullivan, Julie M.; Wise, Archie; et al. (Database J. Biol. Databases Curation, 2022)

InterMineR: an R package for InterMine databases. - Kyritsis, Konstantinos A; Wang, Bing; Sullivan, Julie M.; Lyne, Rachel; Micklem, Gos (Bioinform., 2019)

Implementing FAIR Principles in InterMine. - Butano, Daniela; Clark-Casey, Justin; Contrino, Sergio; Heimbach, Joshua; Lyne, Rachel; Reierskog, Kevin Herald; Sullivan, Julie M.; Yehudi, Yo; Micklem, Gos (2019)

JAMI: a Java library for molecular interactions and data interoperability. - Dumousseau, M. Sivade; Koch, Maximilian; Shrivastava, Anjali; Alonso-López, Diego; Rivas, Javier De Las; del-Toro, Noemi; Combe, Colin W.; Meldal, Birgit H. M.; Heimbach, Joshua; Rappsilber, Juri; Sullivan, Julie M.; Yehudi, Yo; et al. (BMC Bioinform., 2018)

Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions. - Dumousseau, M. Sivade; Alonso-López, Diego; Ammari, Mais G.; Bradley, Glyn; Campbell, Nancy H.; Céol, Arnaud; Cesareni, Gianni; Combe, Colin W.; Rivas, Javier De Las; del-Toro, Noemi; Heimbach, Joshua; Hermjakob, Henning; et al. (BMC Bioinform., 2018)

The InterMine Android app: Cross-organism genomic data in your pocket. - Komkova, Daria; Lyne, Rachel; Sullivan, Julie M.; Yehudi, Yo; Micklem, Gos (F1000Research, 2018)

Understanding the Systems Biology of Pathogen Virulence Using Semantic Methodologies. - Rhee, David; Shieh, Kevin R.; Sullivan, Julie M.; Micklem, Gos; Kim, Kami; Golden, Aaron (2016)

Semantic Research Platform for Model Organisms. - Déraspe, Maxime; Karra, Kalpana; Binkley, Gail; Sullivan, Julie M.; Micklem, Gos; Corbeil, Jacques; Cherry, J. Michael; Dumontier, Michel (2016)

Making Linked Data SPARQL with the InterMine Biological Data Warehouse. - Déraspe, Maxime; Binkley, Gail; Butano, Daniela; Chadwick, Matthew; Cherry, J. Michael; Clark-Casey, Justin; Contrino, Sergio; Corbeil, Jacques; Heimbach, Joshua; Karra, Kalpana; Lyne, Rachel; Sullivan, Julie M.; et al. (2016)

toxoMine: an integrated omics data warehouse for Toxoplasma gondii systems biology research. - Rhee, David B.; Croken, Matthew McKnight; Shieh, Kevin R.; Sullivan, Julie M.; Micklem, Gos; Kim, Kami; Golden, Aaron (Database J. Biol. Databases Curation, 2015)

Araport: the Arabidopsis Information Portal. - Krishnakumar, Vivek; Hanlon, Matthew R.; Contrino, Sergio; Ferlanti, Erik S.; Karamycheva, Svetlana; Kim, Maria; Rosen, Benjamin D.; Cheng, Chia-Yi; Moreira, Walter; Mock, Stephen A.; Stubbs, Joseph; Sullivan, Julie M.; et al. (Nucleic Acids Res., 2015)

InterMine: extensive web services for modern biology. - Kalderimis, Alex; Lyne, Rachel; Butano, Daniela; Contrino, Sergio; Lyne, Mike; Heimbach, Joshua; Hu, Fengyuan; Smith, Richard N.; Stepan, Radek; Sullivan, Julie M.; Micklem, Gos (Nucleic Acids Res., 2014)

BioJS InterMine List Analysis: A BioJS component for displaying graphical or statistical analysis of collections of items from InterMine endpoints. - Kalderimis, Alex; Stepan, Radek; Sullivan, Julie M.; Lyne, Rachel; Lyne, Michael; Micklem, Gos (F1000Research, 2014)

BioJS InterMineTable Component: A BioJS component for displaying data from InterMine compatible webservice endpoints. - Kalderimis, Alex; Stepan, Radek; Sullivan, Julie M.; Lyne, Rachel; Lyne, Michael; Micklem, Gos (F1000Research, 2014)

BioJS DAGViewer: A reusable JavaScript component for displaying directed graphs. - Kalderimis, Alex; Stepan, Radek; Sullivan, Julie M.; Lyne, Rachel; Lyne, Michael; Micklem, Gos (F1000Research, 2014)

YeastMine - an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit. - Balakrishnan, Rama; Park, Julie; Karra, Kalpana; Hitz, Benjamin C.; Binkley, Gail; Hong, Eurie L.; Sullivan, Julie M.; Micklem, Gos; Cherry, J. Michael (Database J. Biol. Databases Curation, 2012)

InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data. - Smith, Richard N.; Aleksic, Jelena; Butano, Daniela; Carr, Adrian; Contrino, Sergio; Hu, Fengyuan; Lyne, Mike; Lyne, Rachel; Kalderimis, Alex; Rutherford, Kim; Stepan, Radek; Sullivan, Julie M.; et al. (Bioinform., 2012)

modMine: flexible access to modENCODE data. - Contrino, Sergio; Smith, Richard N.; Butano, Daniela; Carr, Adrian; Hu, Fengyuan; Lyne, Rachel; Rutherford, Kim; Kalderimis, Alex; Sullivan, Julie M.; Carbon, Seth; Kephart, Ellen T.; Lloyd, Paul; et al. (Nucleic Acids Res., 2012)

Footprinting, circular dichroism and UV melting studies on neomycin B binding to the packaging region of human immunodeficiency virus type-1 RNA. - McPike, Mark P.; Sullivan, Julie M.; Goodisman, Jerry; Dabrowiak, James C. (Nucleic Acids Res., 2002)