Genome Modeling System: A Knowledge Management Platform for Genomics. - Griffith, Malachi; Griffith, Obi L.; Smith, Scott M.; Ramu, Avinash; Callaway, Matthew B.; Brummett, Anthony M.; Kiwala, Michael J.; Coffman, Adam C.; Regier, Allison A.; Oberkfell, Benjamin J.; Sanderson, Gabriel E.; Mooney, Thomas P.; et al. (PLoS Comput. Biol., 2015)

Integrative Genome-wide Analysis of the Determinants of RNA Splicing in Kidney Renal Clear Cell Carcinoma. - Lehmann, Kjong-Van; Kahles, André; Kandoth, Cyriac; Lee, William; Schultz, Nikolaus; Stegle, Oliver; Rätsch, Gunnar (2015)

BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data. - Chen, Ken; Wallis, John W.; Kandoth, Cyriac; Kalicki-Veizer, Joelle M.; Mungall, Karen L.; Mungall, Andrew J.; Jones, Steven J. M.; Marra, Marco A.; Ley, Timothy J.; Mardis, Elaine R.; Wilson, Richard K.; Weinstein, John N.; et al. (Bioinform., 2012)

PathScan: a tool for discerning mutational significance in groups of putative cancer genes. - Wendl, Michael C.; Wallis, John W.; Lin, Ling; Kandoth, Cyriac; Mardis, Elaine R.; Wilson, Richard K.; Ding, Li (Bioinform., 2011)

A framework for automated enrichment of functionally significant inverted repeats in whole genomes. - Kandoth, Cyriac; Erçal, Fikret; Frank, Ronald L. (BMC Bioinform., 2010)

Angular Mobility Assisted Coverage in Directional Sensor Networks. - Kandoth, Cyriac; Chellappan, Sriram (2009)

Validation of an NSP-based (negative selection pattern) gene family identification strategy. - Frank, Ronald L.; Kandoth, Cyriac; Erçal, Fikret (BMC Bioinform., 2008)