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Beatrice Alex
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- affiliation: University of Edinburgh, UK
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2020 – today
- 2024
- [i15]Matús Falis, Aryo Pradipta Gema
, Hang Dong, Luke Daines, Siddharth Basetti, Michael Holder, Rose S. Penfold, Alexandra Birch, Beatrice Alex:
Can GPT-3.5 Generate and Code Discharge Summaries? CoRR abs/2401.13512 (2024) - [i14]Aryo Pradipta Gema
, Giwon Hong, Pasquale Minervini, Luke Daines, Beatrice Alex:
Edinburgh Clinical NLP at SemEval-2024 Task 2: Fine-tune your model unless you have access to GPT-4. CoRR abs/2404.00484 (2024) - [i13]Aryo Pradipta Gema, Chaeeun Lee, Pasquale Minervini, Luke Daines, T. Ian Simpson, Beatrice Alex:
Edinburgh Clinical NLP at MEDIQA-CORR 2024: Guiding Large Language Models with Hints. CoRR abs/2405.18028 (2024) - [i12]Abul Hasan, Jinge Wu, Quang Ngoc Nguyen, Salomé Andres, Imane Guellil, Huayu Zhang, Arlene Casey, Beatrice Alex, Bruce Guthrie, Honghan Wu:
Infusing clinical knowledge into tokenisers for language models. CoRR abs/2406.14312 (2024) - [i11]Giorgos Lysandrou, Roma English Owen, Vanja Popovic, Grant Le Brun, Aryo Pradipta Gema, Beatrice Alex, Elizabeth A. L. Fairley:
A Comparative Study on Patient Language across Therapeutic Domains for Effective Patient Voice Classification in Online Health Discussions. CoRR abs/2407.16593 (2024) - 2023
- [j17]Arlene Casey, Emma M. Davidson, Claire Grover, Richard Tobin, Andreas Grivas, Huayu Zhang, Patrick Schrempf, Alison Q. O'Neil, Liam Lee, Michael Walsh, Freya Pellie, Karen Ferguson, Vera Cvoro, Honghan Wu
, Heather Whalley, Grant Mair
, William Whiteley, Beatrice Alex:
Understanding the performance and reliability of NLP tools: a comparison of four NLP tools predicting stroke phenotypes in radiology reports. Frontiers Digit. Health 5 (2023) - [j16]Huayu Zhang, Arlene Casey, Imane Guellil, Víctor Suárez-Paniagua, Clare Macrae, Charis Marwick, Honghan Wu
, Bruce Guthrie, Beatrice Alex:
FLAP: a framework for linking free-text addresses to the Ordnance Survey Unique Property Reference Number database. Frontiers Digit. Health 5 (2023) - [j15]Hang Dong, Víctor Suárez-Paniagua, Huayu Zhang, Minhong Wang, Arlene Casey, Emma M. Davidson, Jiaoyan Chen, Beatrice Alex, William Whiteley, Honghan Wu
:
Ontology-driven and weakly supervised rare disease identification from clinical notes. BMC Medical Informatics Decis. Mak. 23(1): 86 (2023) - [c29]Lucy Havens, Rachel Hosker, Beatrice Alex, Benjamin Bach, Melissa Terras:
Collaboration Across the Archival and Computational Sciences to Address Legacies of Gender Bias in Descriptive Metadata. DH 2023 - [c28]Jesse Phitidis
, Alison Q. O'Neil
, Stewart Wiseman
, David Alexander Dickie
, Eleni Sakka
, Agniete Kampaite
, William Whiteley
, Miguel O. Bernabeu
, Beatrice Alex
, Joanna M. Wardlaw
, Maria del C. Valdés Hernández
:
Segmentation of White Matter Hyperintensities and Ischaemic Stroke Lesions in Structural MRI. MIUA 2023: 3-17 - [i10]Aryo Pradipta Gema
, Luke Daines, Pasquale Minervini, Beatrice Alex:
Parameter-Efficient Fine-Tuning of LLaMA for the Clinical Domain. CoRR abs/2307.03042 (2023) - [i9]Giorgos Lysandrou, Roma English Owen, Vanja Popovic, Grant Le Brun, Beatrice Alex, Elizabeth A. L. Fairley:
Classifying patient voice in social media data using neural networks: A comparison of AI models on different data sources and therapeutic domains. CoRR abs/2312.03747 (2023) - 2022
- [j14]Hang Dong
, Matús Falis, William Whiteley
, Beatrice Alex, Joshua Matterson
, Shaoxiong Ji
, Jiaoyan Chen
, Honghan Wu
:
Automated clinical coding: what, why, and where we are? npj Digit. Medicine 5 (2022) - [j13]Honghan Wu
, Minhong Wang, Jinge Wu, Farah Francis
, Yun-Hsuan Chang, Alex Shavick, Hang Dong
, Michael Tin Chung Poon
, Natalie K. Fitzpatrick, Adam P. Levine
, Luke T. Slater, Alex Handy
, Andreas Karwath
, Georgios V. Gkoutos
, Claude Chelala, Anoop D. Shah
, Robert Stewart
, Nigel Collier, Beatrice Alex, William Whiteley
, Cathie Sudlow, Angus Roberts
, Richard J. B. Dobson
:
A survey on clinical natural language processing in the United Kingdom from 2007 to 2022. npj Digit. Medicine 5 (2022) - [c27]Matús Falis, Hang Dong
, Alexandra Birch, Beatrice Alex:
Horses to Zebras: Ontology-Guided Data Augmentation and Synthesis for ICD-9 Coding. BioNLP@ACL 2022: 389-401 - [c26]Imane Guellil, Jinge Wu, Honghan Wu, Tony Sun, Beatrice Alex:
Edinburgh_UCL_Health@SMM4H'22: From Glove to Flair for handling imbalanced healthcare corpora related to Adverse Drug Events, Change in medication and self-reporting vaccination. SMM4H@COLING 2022: 148-152 - [c25]Lucy Havens, Benjamin Bach, Melissa Terras, Beatrice Alex:
Beyond Explanation: A Case for Exploratory Text Visualizations of Non-Aggregated, Annotated Datasets. NLPerspectives@LREC 2022: 73-82 - [i8]Hang Dong, Matús Falis, William Whiteley, Beatrice Alex, Shaoxiong Ji, Jiaoyan Chen, Honghan Wu
:
Automated Clinical Coding: What, Why, and Where We Are? CoRR abs/2203.11092 (2022) - [i7]Hang Dong
, Víctor Suárez-Paniagua, Huayu Zhang, Minhong Wang, Arlene Casey, Emma M. Davidson, Jiaoyan Chen, Beatrice Alex, William Whiteley, Honghan Wu:
Ontology-Based and Weakly Supervised Rare Disease Phenotyping from Clinical Notes. CoRR abs/2205.05656 (2022) - 2021
- [j12]Emma M. Davidson, Michael Tin Chung Poon, Arlene Casey, Andreas Grivas, Daniel Duma, Hang Dong
, Víctor Suárez-Paniagua, Claire Grover, Richard Tobin, Heather Whalley
, Honghan Wu
, Beatrice Alex, William Whiteley
:
The reporting quality of natural language processing studies: systematic review of studies of radiology reports. BMC Medical Imaging 21(1): 142 (2021) - [j11]Arlene Casey, Mike Bennett
, Richard Tobin, Claire Grover, Iona Walker, Lukas Engelmann, Beatrice Alex:
Plague Dot Text: Text mining and annotation of outbreak reports of the Third Plague Pandemic (1894-1952). J. Data Min. Digit. Humanit. 2021 (2021) - [j10]Arlene Casey, Emma M. Davidson, Michael Tin Chung Poon
, Hang Dong
, Daniel Duma, Andreas Grivas, Claire Grover, Víctor Suárez-Paniagua, Richard Tobin, William Whiteley
, Honghan Wu
, Beatrice Alex:
A systematic review of natural language processing applied to radiology reports. BMC Medical Informatics Decis. Mak. 21(1): 179 (2021) - [j9]Beatrice Alex, Donald Whyte, Daniel Duma, Roma English Owen, Elizabeth A. L. Fairley:
Classifying patient and professional voice in social media health posts. BMC Medical Informatics Decis. Mak. 21(1): 244 (2021) - [j8]D. Sykes, Andreas Grivas, Claire Grover, Richard Tobin, Cathie Sudlow, William Whiteley, Andrew M. McIntosh
, Heather Whalley
, Beatrice Alex:
Comparison of rule-based and neural network models for negation detection in radiology reports. Nat. Lang. Eng. 27(2): 203-224 (2021) - [c24]Rosa Filgueira, Claire Grover, Vasilios Karaiskos, Beatrice Alex, Sarah Van Eyndhoven, Lisa Gotthard
, Melissa Terras:
Extending defoe for the Efficient Analysis of Historical Texts at Scale. e-Science 2021: 21-29 - [c23]Matús Falis, Hang Dong
, Alexandra Birch
, Beatrice Alex:
CoPHE: A Count-Preserving Hierarchical Evaluation Metric in Large-Scale Multi-Label Text Classification. EMNLP (1) 2021: 907-912 - [i6]Arlene Casey, Emma M. Davidson, Michael Tin Chung Poon, Hang Dong, Daniel Duma, Andreas Grivas, Claire Grover, Víctor Suárez-Paniagua, Richard Tobin, William Whiteley, Honghan Wu, Beatrice Alex:
A Systematic Review of Natural Language Processing Applied to Radiology Reports. CoRR abs/2102.09553 (2021) - [i5]Beatrice Alex, Clare Llewellyn, Pawel Michal Orzechowski, Maria Boutchkova:
The Online Pivot: Lessons Learned from Teaching a Text and Data Mining Course in Lockdown, Enhancing online Teaching with Pair Programming and Digital Badges. CoRR abs/2105.07847 (2021) - [i4]Matús Falis, Hang Dong, Alexandra Birch, Beatrice Alex:
CoPHE: A Count-Preserving Hierarchical Evaluation Metric in Large-Scale Multi-Label Text Classification. CoRR abs/2109.04853 (2021) - 2020
- [c22]Andreas Grivas, Beatrice Alex, Claire Grover, Richard Tobin, William Whiteley:
Not a cute stroke: Analysis of Rule- and Neural Network-based Information Extraction Systems for Brain Radiology Reports. LOUHI@EMNLP 2020: 24-37 - [i3]Arlene Casey, Mike Bennett
, Richard Tobin, Claire Grover, Iona Walker, Lukas Engelmann, Beatrice Alex:
Plague Dot Text: Text mining and annotation of outbreak reports of the Third Plague Pandemic (1894-1952). CoRR abs/2002.01415 (2020) - [i2]Lucy Havens, Melissa Terras, Benjamin Bach, Beatrice Alex:
Situated Data, Situated Systems: A Methodology to Engage with Power Relations in Natural Language Processing Research. CoRR abs/2011.05911 (2020)
2010 – 2019
- 2019
- [j7]Beatrice Alex
, Claire Grover, Richard Tobin, Cathie Sudlow, Grant Mair
, William Whiteley
:
Text mining brain imaging reports. J. Biomed. Semant. 10(1): 23:1-23:11 (2019) - [j6]Beatrice Alex
, Claire Grover, Richard Tobin, Jon Oberlander:
Geoparsing historical and contemporary literary text set in the City of Edinburgh. Lang. Resour. Evaluation 53(4): 651-675 (2019) - [j5]Emily Wheater, Grant Mair
, Cathie Sudlow, Beatrice Alex
, Claire Grover, William Whiteley
:
A validated natural language processing algorithm for brain imaging phenotypes from radiology reports in UK electronic health records. BMC Medical Informatics Decis. Mak. 19(1): 184:1-184:11 (2019) - [c21]Aurora Constantin, Catherine Lai, Elaine Farrow
, Beatrice Alex
, Ruth Pel-Littel, Henk Herman Nap, Johan Jeuring:
"Why is the Doctor a Man": Reactions of Older Adults to a Virtual Training Doctor. CHI Extended Abstracts 2019 - [c20]Arlene Casey, Mike Bennett, Richard Tobin, Claire Grover, Lukas Engelmann, Beatrice Alex:
Plague Dot Text: Text Mining and Annotation of Outbreak Reports of the Third Plague Pandemic (1894-1952). HistoInformatics@TPDL 2019: 50-59 - [c19]Catherine Lai, Beatrice Alex
, Johanna D. Moore, Leimin Tian, Tatsuro Hori, Gianpiero Francesca:
Detecting Topic-Oriented Speaker Stance in Conversational Speech. INTERSPEECH 2019: 46-50 - [e5]Beatrice Alex, Stefania Degaetano-Ortlieb, Anna Kazantseva, Nils Reiter, Stan Szpakowicz:
Proceedings of the 3rd Joint SIGHUM Workshop on Computational Linguistics for Cultural Heritage, Social Sciences, Humanities and Literature, LaTeCH@NAACL-HLT 2019, Minneapolis, MN, USA, June 7, 2019. Association for Computational Linguistics 2019, ISBN 978-1-950737-00-0 [contents] - [i1]Philip John Gorinski, Honghan Wu
, Claire Grover, Richard Tobin, Conn Talbot, Heather Whalley, Cathie Sudlow, William Whiteley, Beatrice Alex:
Named Entity Recognition for Electronic Health Records: A Comparison of Rule-based and Machine Learning Approaches. CoRR abs/1903.03985 (2019) - 2018
- [e4]Beatrice Alex, Stefania Degaetano-Ortlieb, Anna Feldman, Anna Kazantseva, Nils Reiter, Stan Szpakowicz:
Proceedings of the Second Joint SIGHUM Workshop on Computational Linguistics for Cultural Heritage, Social Sciences, Humanities and Literature, LaTeCH@COLING 2018, Santa Fe, New Mexico, USA, August 25, 2018. Association for Computational Linguistics 2018, ISBN 978-1-948087-61-2 [contents] - 2017
- [j4]Beatrice Alex, Claire Grover, Jon Oberlander, Tara Thomson
, Miranda Anderson, James Loxley, Uta Hinrichs
, Ke Zhou:
Palimpsest: Improving assisted curation of loco-specific literature. Digit. Scholarsh. Humanit. 32(suppl_1): i4-i16 (2017) - [e3]Beatrice Alex, Stefania Degaetano-Ortlieb, Anna Feldman, Anna Kazantseva, Nils Reiter, Stan Szpakowicz:
Proceedings of the Joint SIGHUM Workshop on Computational Linguistics for Cultural Heritage, Social Sciences, Humanities and Literature, LaTeCH@ACL 2017, Vancouver, Canada, August 4, 2017. Association for Computational Linguistics 2017, ISBN 978-1-945626-58-6 [contents] - 2016
- [c18]Beatrice Alex, Clare Llewellyn, Claire Grover, Jon Oberlander, Richard Tobin:
Homing in on Twitter Users: Evaluating an Enhanced Geoparser for User Profile Locations. LREC 2016 - [e2]Beatrice Alex, Nils Reiter:
Proceedings of the 10th SIGHUM Workshop on Language Technology for Cultural Heritage, Social Sciences, and Humanities, LaTeCH@ACL 2016, August 11, 2016, Berlin, Germany. The Association for Computer Linguistics 2016, ISBN 978-1-945626-09-8 [contents] - 2015
- [j3]Beatrice Alex, Kate Byrne, Claire Grover, Richard Tobin:
Adapting the Edinburgh Geoparser for Historical Georeferencing. Int. J. Humanit. Arts Comput. 9(1): 15-35 (2015) - [j2]Uta Hinrichs
, Beatrice Alex
, Jim Clifford, Andrew Watson, Aaron J. Quigley
, Ewan Klein, Colin Coates:
Trading Consequences: A Case Study of Combining Text Mining and Visualization to Facilitate Document Exploration. Digit. Scholarsh. Humanit. 30(Suppl-1): i50-i75 (2015) - [c17]Clare Llewellyn, Claire Grover, Beatrice Alex
, Jon Oberlander, Richard Tobin:
Extracting a Topic Specific Dataset from a Twitter Archive. TPDL 2015: 364-367 - [e1]Kalliopi Zervanou, Marieke van Erp, Beatrice Alex:
Proceedings of the 9th SIGHUM Workshop on Language Technology for Cultural Heritage, Social Sciences, and Humanities, LaTeCH@ACL 2015, July 30, 2015, Beijing, China. The Association for Computer Linguistics 2015, ISBN 978-1-941643-63-1 [contents] - 2014
- [c16]Beatrice Alex, Kate Byrne, Claire Grover, Richard Tobin:
A Web-based Geo-resolution Annotation and Evaluation Tool. LAW@COLING 2014: 59-63 - [c15]Beatrice Alex
, John Burns:
Estimating and rating the quality of optically character recognised text. DATeCH 2014: 97-102 - [c14]Uta Hinrichs, Beatrice Alex, Jim Clifford, Aaron Quigley:
Trading Consequences: A Case Study of Combining Text Mining & Visualisation to Facilitate Document Exploration. DH 2014 - [c13]Ewan Klein, Beatrice Alex, Jim Clifford:
Bootstrapping a historical commodities lexicon with SKOS and DBpedia. LaTeCH@EACL 2014: 13-21 - 2012
- [c12]Beatrice Alex, Claire Grover, Ewan Klein, Richard Tobin:
Digitised historical text: Does it have to be mediOCRe?. KONVENS 2012: 401-409 - 2010
- [c11]Beatrice Alex, Claire Grover, Rongzhou Shen, Mijail A. Kabadjov:
Agile Corpus Annotation in Practice: An Overview of Manual and Automatic Annotation of CVs. Linguistic Annotation Workshop 2010: 29-37 - [c10]Claire Grover, Richard Tobin, Beatrice Alex, Kate Byrne:
Edinburgh-LTG: TempEval-2 System Description. SemEval@ACL 2010: 333-336
2000 – 2009
- 2008
- [b1]Beatrice Alex:
Automatic detection of English inclusions in mixed-lingual text with an application to parsing. University of Edinburgh, UK, 2008 - [c9]Beatrice Alex:
Comparing Corpus-based to Web-based Lookup Techniques for Automatic English Inclusion Detection. LREC 2008 - [c8]Barry Haddow, Beatrice Alex:
Exploiting Multiply Annotated Corpora in Biomedical Information Extraction Tasks. LREC 2008 - [c7]Beatrice Alex, Claire Grover, Barry Haddow, Mijail Kabadjor, Ewan Klein, Michael Matthews, Stuart Roebuck, Richard Tobin, Xinglong Wang:
Assisted Curation: Does Text Mining Really Help?. Pacific Symposium on Biocomputing 2008: 556-567 - 2007
- [c6]Beatrice Alex, Barry Haddow, Claire Grover:
Recognising Nested Named Entities in Biomedical Text. BioNLP@ACL 2007: 65-72 - [c5]Beatrice Alex, Amit Dubey, Frank Keller:
Using Foreign Inclusion Detection to Improve Parsing Performance. EMNLP-CoNLL 2007: 151-160 - 2006
- [c4]Beatrice Alex, Malvina Nissim, Claire Grover:
The Impact of Annotation on the Performance of Protein Tagging in Biomedical Text. LREC 2006: 595-600 - 2005
- [j1]Jenny Rose Finkel, Shipra Dingare, Christopher D. Manning
, Malvina Nissim, Beatrice Alex
, Claire Grover:
Exploring the boundaries: gene and protein identification in biomedical text. BMC Bioinform. 6(S-1) (2005) - [c3]Beatrice Alex:
An Unsupervised System for Identifying English Inclusions in German Text. ACL 2005: 133-138 - [c2]Ben Hachey, Beatrice Alex, Markus Becker:
Investigating the Effects of Selective Sampling on the Annotation Task. CoNLL 2005: 144-151 - 2004
- [c1]Kisuh Ahn, Beatrice Alex, Johan Bos, Tiphaine Dalmas, Jochen L. Leidner
, Matthew Smillie:
Cross-Lingual Question Answering Using Off-the-Shelf Machine Translation. CLEF 2004: 446-457
Coauthor Index
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last updated on 2024-08-20 20:31 CEST by the dblp team
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