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Natalie Stanley
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2020 – today
- 2024
- [j7]Jamshaid A. Shahir, Natalie Stanley, Jeremy E. Purvis:
Cellograph: a semi-supervised approach to analyzing multi-condition single-cell RNA-sequencing data using graph neural networks. BMC Bioinform. 25(1): 25 (2024) - [i9]Chi-Jane Chen, Haidong Yi, Natalie Stanley:
Conditional Similarity Triplets Enable Covariate-Informed Representations of Single-Cell Data. CoRR abs/2406.08638 (2024) - 2023
- [j6]Martin Becker
, Huda Nassar, Camilo Espinosa
, Ina A. Stelzer
, Dorien Feyaerts
, Eloïse Berson
, Neda Hajiakhoond Bidoki, Alan L. Chang, Geetha Saarunya
, Anthony Culos, Davide De Francesco, Ramin Fallahzadeh, Qun Liu, Yeasul Kim, Ivana Maric
, Samson Mataraso, Seyedeh Neelufar Payrovnaziri, Thanaphong Phongpreecha
, Neal G. Ravindra, Natalie Stanley, Sayane Shome, Yuqi Tan
, Melan Thuraiappah, Maria Xenochristou, Lei Xue, Gary M. Shaw
, David K. Stevenson, Martin S. Angst
, Brice Gaudilliere, Nima Aghaeepour:
Large-scale correlation network construction for unraveling the coordination of complex biological systems. Nat. Comput. Sci. 3(4): 346-359 (2023) - 2022
- [j5]Ivana Maric
, Kévin Contrepois, Mira N. Moufarrej, Ina A. Stelzer
, Dorien Feyaerts
, Xiaoyuan Han, Andy Tang, Natalie Stanley, Ronald J. Wong, Gavin M. Traber, Mathew Ellenberger, Alan L. Chang, Ramin Fallahzadeh, Huda Nassar, Martin Becker, Maria Xenochristou, Camilo Espinosa, Davide De Francesco
, Mohammad S. Ghaemi, Elizabeth K. Costello, Anthony Culos, Xuefeng Bruce Ling
, Karl G. Sylvester
, Gary L. Darmstadt
, Virginia D. Winn
, Gary M. Shaw
, David A. Relman
, Stephen R. Quake, Martin S. Angst
, Michael P. Snyder
, David K. Stevenson, Brice Gaudilliere, Nima Aghaeepour:
Early prediction and longitudinal modeling of preeclampsia from multiomics. Patterns 3(12): 100655 (2022) - [c6]Siyuan Shan, Vishal Athreya Baskaran, Haidong Yi, Jolene Ranek, Natalie Stanley, Junier B. Oliva:
Transparent single-cell set classification with kernel mean embeddings. BCB 2022: 25:1-25:10 - [c5]Vishal Athreya Baskaran, Jolene Ranek, Siyuan Shan, Natalie Stanley, Junier B. Oliva:
Distribution-based sketching of single-cell samples. BCB 2022: 26:1-26:10 - [c4]Haidong Yi, Natalie Stanley:
CytoEMD: detecting and visualizing between-sample variation in relation to phenotype with earth mover's distance. BCB 2022: 28:1-28:14 - [i8]Siyuan Shan, Vishal Baskaran, Haidong Yi, Jolene Ranek, Natalie Stanley, Junier Oliva:
Interpretable Single-Cell Set Classification with Kernel Mean Embeddings. CoRR abs/2201.07322 (2022) - [i7]Vishal Athreya Baskaran, Jolene Ranek, Siyuan Shan, Natalie Stanley, Junier B. Oliva:
Distribution-based Sketching of Single-Cell Samples. CoRR abs/2207.00584 (2022) - 2021
- [c3]Haidong Yi, Natalie Stanley:
CytoSet: predicting clinical outcomes via set-modeling of cytometry data. BCB 2021: 47:1-47:8 - 2020
- [j4]Anthony Culos
, Amy Tsai
, Natalie Stanley, Martin Becker
, Mohammad Sajjad Ghaemi, David Mcilwain, Ramin Fallahzadeh, Athena Tanada, Huda Nassar, Camilo Espinosa
, Maria Xenochristou, Edward Ganio, Laura Peterson
, Xiaoyuan Han
, Ina A. Stelzer
, Kazuo Ando
, Dyani Gaudilliere
, Thanaphong Phongpreecha
, Ivana Maric
, Alan L. Chang, Gary M. Shaw
, David K. Stevenson, Sean Bendall
, Kara L. Davis, Wendy J. Fantl, Garry P. Nolan
, Trevor Hastie
, Robert Tibshirani, Martin S. Angst
, Brice Gaudilliere
, Nima Aghaeepour
:
Integration of mechanistic immunological knowledge into a machine learning pipeline improves predictions. Nat. Mach. Intell. 2(10): 619-628 (2020)
2010 – 2019
- 2019
- [j3]Natalie Stanley, Thomas Bonacci, Roland Kwitt
, Marc Niethammer, Peter J. Mucha:
Stochastic block models with multiple continuous attributes. Appl. Netw. Sci. 4(1): 54:1-54:22 (2019) - [j2]Mohammad Sajjad Ghaemi, Daniel B. DiGiulio, Kévin Contrepois, Benjamin J. Callahan
, Thuy T. M. Ngo, Brittany Lee-McMullen, Benoit Lehallier, Anna Robaczewska, David Mcilwain, Yael Rosenberg-Hasson, Ronald J. Wong, Cecele Quaintance, Anthony Culos, Natalie Stanley, Athena Tanada, Amy Tsai
, Dyani Gaudilliere
, Edward Ganio, Xiaoyuan Han, Kazuo Ando
, Leslie McNeil, Martha Tingle, Paul H. Wise, Ivana Maric, Marina Sirota, Tony Wyss-Coray
, Virginia D. Winn
, Maurice L. Druzin
, Ronald Gibbs, Gary L. Darmstadt
, David B. Lewis, Vahid Partovi Nia
, Bruno Agard
, Robert Tibshirani, Garry P. Nolan, Michael P. Snyder
, David A. Relman, Stephen R. Quake, Gary M. Shaw
, David K. Stevenson, Martin S. Angst, Brice Gaudilliere, Nima Aghaeepour:
Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy. Bioinform. 35(1): 95-103 (2019) - 2018
- [b1]Natalie Stanley:
Adapting Community Detection Approaches to Large, Multilayer, and Attributed Networks. University of North Carolina, Chapel Hill, USA, 2018 - [c2]Han Zhang, Natalie Stanley, Peter J. Mucha, Weiyan Yin
, Weili Lin, Dinggang Shen:
Multi-layer Large-Scale Functional Connectome Reveals Infant Brain Developmental Patterns. MICCAI (3) 2018: 136-144 - [i6]Natalie Stanley, Thomas Bonacci, Roland Kwitt, Marc Niethammer, Peter J. Mucha:
Stochastic Block Models with Multiple Continuous Attributes. CoRR abs/1803.02726 (2018) - [i5]Natalie Stanley, Marc Niethammer, Peter J. Mucha:
Testing Alignment of Node Attributes with Network Structure Through Label Propagation. CoRR abs/1805.07375 (2018) - 2017
- [c1]Rui Zhang, Natalie Stanley, Christopher Griggs, Andrew Chi, Cynthia Sturton:
Identifying Security Critical Properties for the Dynamic Verification of a Processor. ASPLOS 2017: 541-554 - [i4]Saray Shai, Natalie Stanley, Clara Granell, Dane Taylor, Peter J. Mucha:
Case studies in network community detection. CoRR abs/1705.02305 (2017) - [i3]Natalie Stanley, Roland Kwitt, Marc Niethammer, Peter J. Mucha:
Compressing networks with super nodes. CoRR abs/1706.04110 (2017) - 2016
- [j1]Natalie Stanley, Saray Shai, Dane Taylor, Peter J. Mucha:
Clustering Network Layers with the Strata Multilayer Stochastic Block Model. IEEE Trans. Netw. Sci. Eng. 3(2): 95-105 (2016) - 2015
- [i2]Natalie Stanley, Saray Shai, Dane Taylor, Peter J. Mucha:
Clustering Network Layers With the Strata Multilayer Stochastic Block Model. CoRR abs/1507.01826 (2015) - [i1]Dane Taylor, Saray Shai, Natalie Stanley, Peter J. Mucha:
Enhanced detectability of community structure in multilayer networks through layer aggregation. CoRR abs/1511.05271 (2015)
Coauthor Index
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last updated on 2024-07-10 20:44 CEST by the dblp team
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