The UCSC Genome Browser database: 2023 update. - Nassar, Luis R.; Barber, Galt P.; Benet-Pagès, Anna; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Fischer, Clayton M.; Gonzalez, Jairo Navarro; Hinrichs, Angie S.; Lee, Brian T.; Lee, Christopher M.; Muthuraman, Pranav; et al. (Nucleic Acids Res., 2023)

The UCSC Genome Browser database: 2022 update. - Lee, Brian T.; Barber, Galt P.; Benet-Pagès, Anna; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Fischer, Clayton M.; Gonzalez, Jairo Navarro; Hinrichs, Angie S.; Lee, Christopher M.; Muthuraman, Pranav; Nassar, Luis R.; et al. (Nucleic Acids Res., 2022)

UCSC Cell Browser: visualize your single-cell data. - Speir, Matthew L.; Bhaduri, Aparna; Markov, Nikolay S.; Moreno, Pablo A.; Nowakowski, Tomasz J.; Papatheodorou, Irene; Pollen, Alex A.; Raney, Brian J.; Seninge, Lucas; Kent, W. James; Haeussler, Maximilian (Bioinform., 2021)

The UCSC Genome Browser database: 2021 update. - Gonzalez, Jairo Navarro; Zweig, Ann S.; Speir, Matthew L.; Schmelter, Daniel; Rosenbloom, Kate R.; Raney, Brian J.; Powell, Conner C.; Nassar, Luis R.; Maulding, Nathan D.; Lee, Christopher M.; Lee, Brian T.; Hinrichs, Angie S.; et al. (Nucleic Acids Res., 2021)

UCSC Genome Browser enters 20th year. - Lee, Christopher M.; Barber, Galt P.; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Gonzalez, Jairo Navarro; Hinrichs, Angie S.; Lee, Brian T.; Nassar, Luis R.; Powell, Conner C.; Raney, Brian J.; Rosenbloom, Kate R.; et al. (Nucleic Acids Res., 2020)

The UCSC Genome Browser database: 2019 update. - Haeussler, Maximilian; Zweig, Ann S.; Tyner, Cath; Speir, Matthew L.; Rosenbloom, Kate R.; Raney, Brian J.; Lee, Christopher M.; Lee, Brian T.; Hinrichs, Angie S.; Gonzalez, Jairo Navarro; Gibson, David; Diekhans, Mark; et al. (Nucleic Acids Res., 2019)

The UCSC Genome Browser database: 2018 update. - Casper, Jonathan; Zweig, Ann S.; Villarreal, Chris; Tyner, Cath; Speir, Matthew L.; Rosenbloom, Kate R.; Raney, Brian J.; Lee, Christopher M.; Lee, Brian T.; Karolchik, Donna; Hinrichs, Angie S.; Haeussler, Maximilian; et al. (Nucleic Acids Res., 2018)

The UCSC Genome Browser database: 2017 update. - Tyner, Cath; Barber, Galt P.; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Eisenhart, Christopher; Fischer, Clayton M.; Gibson, David; Gonzalez, Jairo Navarro; Guruvadoo, Luvina; Haeussler, Maximilian; Heitner, Steven G.; et al. (Nucleic Acids Res., 2017)

UCSC Data Integrator and Variant Annotation Integrator. - Hinrichs, Angie S.; Raney, Brian J.; Speir, Matthew L.; Rhead, Brooke L.; Casper, Jonathan; Karolchik, Donna; Kuhn, Robert M.; Rosenbloom, Kate R.; Zweig, Ann S.; Haussler, David; Kent, W. James (Bioinform., 2016)

The UCSC Genome Browser database: 2016 update. - Speir, Matthew L.; Zweig, Ann S.; Rosenbloom, Kate R.; Raney, Brian J.; Paten, Benedict; Nejad, Parisa; Lee, Brian T.; Learned, Katrina; Karolchik, Donna; Hinrichs, Angie S.; Heitner, Steven G.; Harte, Rachel A.; et al. (Nucleic Acids Res., 2016)

Ontology application and use at the ENCODE DCC. - Malladi, Venkat S.; Erickson, Drew T.; Podduturi, Nikhil R.; Rowe, Laurence D.; Chan, Esther T.; Davidson, Jean M.; Hitz, Benjamin C.; Ho, Marcus; Lee, Brian T.; Miyasato, Stuart R.; Roe, Greg R.; Simison, Matt; et al. (Database J. Biol. Databases Curation, 2015)

Navigating protected genomics data with UCSC Genome Browser in a Box. - Haeussler, Maximilian; Raney, Brian J.; Hinrichs, Angie S.; Clawson, Hiram; Zweig, Ann S.; Karolchik, Donna; Casper, Jonathan; Speir, Matthew L.; Haussler, David; Kent, W. James (Bioinform., 2015)

The NIH BD2K center for big data in translational genomics. - Paten, Benedict; Diekhans, Mark; Druker, Brian J.; Friend, Stephen H.; Guinney, Justin; Gassner, Nadine; Guttman, Mitchell; Kent, W. James; Mantey, Patrick; Margolin, Adam A.; Massie, Matt; Novak, Adam M.; et al. (J. Am. Medical Informatics Assoc., 2015)

Building a Pan-Genome Reference for a Population. - Nguyen, Ngan; Hickey, Glenn; Zerbino, Daniel R.; Raney, Brian J.; Earl, Dent; Armstrong, Joel; Kent, W. James; Haussler, David; Paten, Benedict (J. Comput. Biol., 2015)

The UCSC Genome Browser database: 2015 update. - Rosenbloom, Kate R.; Armstrong, Joel; Barber, Galt P.; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Dreszer, Timothy R.; Fujita, Pauline A.; Guruvadoo, Luvina; Haeussler, Maximilian; Harte, Rachel A.; Heitner, Steven G.; et al. (Nucleic Acids Res., 2015)

Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser. - Raney, Brian J.; Dreszer, Timothy R.; Barber, Galt P.; Clawson, Hiram; Fujita, Pauline A.; Wang, Ting; Nguyen, Ngan; Paten, Benedict; Zweig, Ann S.; Karolchik, Donna; Kent, W. James (Bioinform., 2014)

Comparative assembly hubs: Web-accessible browsers for comparative genomics. - Nguyen, Ngan; Hickey, Glenn; Raney, Brian J.; Armstrong, Joel; Clawson, Hiram; Zweig, Ann S.; Karolchik, Donna; Kent, William James; Haussler, David; Paten, Benedict (Bioinform., 2014)

The UCSC Genome Browser database: 2014 update. - Karolchik, Donna; Barber, Galt P.; Casper, Jonathan; Clawson, Hiram; Cline, Melissa S.; Diekhans, Mark; Dreszer, Timothy R.; Fujita, Pauline A.; Guruvadoo, Luvina; Haeussler, Maximilian; Harte, Rachel A.; Heitner, Steven G.; et al. (Nucleic Acids Res., 2014)

The UCSC genome browser and associated tools. - Kuhn, Robert M.; Haussler, David; Kent, W. James (Briefings Bioinform., 2013)

ENCODE Data in the UCSC Genome Browser: year 5 update. - Rosenbloom, Kate R.; Sloan, Cricket A.; Malladi, Venkat S.; Dreszer, Timothy R.; Learned, Katrina; Kirkup, Vanessa; Wong, Matthew C.; Maddren, Morgan; Fang, Ruihua; Heitner, Steven G.; Lee, Brian T.; Barber, Galt P.; et al. (Nucleic Acids Res., 2013)

The UCSC Genome Browser database: extensions and updates 2013. - Meyer, Laurence R.; Zweig, Ann S.; Hinrichs, Angie S.; Karolchik, Donna; Kuhn, Robert M.; Wong, Matthew C.; Sloan, Cricket A.; Rosenbloom, Kate R.; Roe, Greg; Rhead, Brooke L.; Raney, Brian J.; Pohl, Andy; et al. (Nucleic Acids Res., 2013)

ENCODE whole-genome data in the UCSC Genome Browser: update 2012. - Rosenbloom, Kate R.; Dreszer, Timothy R.; Long, Jeffrey C.; Malladi, Venkat S.; Sloan, Cricket A.; Raney, Brian J.; Cline, Melissa S.; Karolchik, Donna; Barber, Galt P.; Clawson, Hiram; Diekhans, Mark; Fujita, Pauline A.; et al. (Nucleic Acids Res., 2012)

The UCSC Genome Browser database: extensions and updates 2011. - Dreszer, Timothy R.; Karolchik, Donna; Zweig, Ann S.; Hinrichs, Angie S.; Raney, Brian J.; Kuhn, Robert M.; Meyer, Laurence R.; Wong, Matthew C.; Sloan, Cricket A.; Rosenbloom, Kate R.; Roe, Greg; Rhead, Brooke L.; et al. (Nucleic Acids Res., 2012)

ENCODE whole-genome data in the UCSC genome browser (2011 update). - Raney, Brian J.; Cline, Melissa S.; Rosenbloom, Kate R.; Dreszer, Timothy R.; Learned, Katrina; Barber, Galt P.; Meyer, Laurence R.; Sloan, Cricket A.; Malladi, Venkat S.; Roskin, Krishna M.; Suh, Bernard B.; Hinrichs, Angie S.; et al. (Nucleic Acids Res., 2011)

The UCSC Genome Browser database: update 2011. - Fujita, Pauline A.; Rhead, Brooke L.; Zweig, Ann S.; Hinrichs, Angie S.; Karolchik, Donna; Cline, Melissa S.; Goldman, Mary; Barber, Galt P.; Clawson, Hiram; Coelho, António; Diekhans, Mark; Dreszer, Timothy R.; et al. (Nucleic Acids Res., 2011)

The UCSC cancer genomics browser: update 2011. - Sanborn, J. Zachary; Benz, Stephen C.; Craft, Brian; Szeto, Christopher; Kober, Kord M.; Meyer, Laurence R.; Vaske, Charles J.; Goldman, Mary; Smith, Kayla E.; Kuhn, Robert M.; Karolchik, Donna; Kent, W. James; et al. (Nucleic Acids Res., 2011)

BigWig and BigBed: enabling browsing of large distributed datasets. - Kent, W. James; Zweig, Ann S.; Barber, Galt P.; Hinrichs, Angie S.; Karolchik, Donna (Bioinform., 2010)

The UCSC Genome Browser database: update 2010. - Rhead, Brooke L.; Karolchik, Donna; Kuhn, Robert M.; Hinrichs, Angie S.; Zweig, Ann S.; Fujita, Pauline A.; Diekhans, Mark; Smith, Kayla E.; Rosenbloom, Kate R.; Raney, Brian J.; Pohl, Andy; Pheasant, Michael; et al. (Nucleic Acids Res., 2010)

ENCODE whole-genome data in the UCSC Genome Browser. - Rosenbloom, Kate R.; Dreszer, Timothy R.; Pheasant, Michael; Barber, Galt P.; Meyer, Laurence R.; Pohl, Andy; Raney, Brian J.; Wang, Ting; Hinrichs, Angie S.; Zweig, Ann S.; Fujita, Pauline A.; Learned, Katrina; et al. (Nucleic Acids Res., 2010)

The UCSC Genome Browser Database: update 2009. - Kuhn, Robert M.; Karolchik, Donna; Zweig, Ann S.; Wang, Ting; Smith, Kayla E.; Rosenbloom, Kate R.; Rhead, Brooke L.; Raney, Brian J.; Pohl, Andy; Pheasant, Michael; Meyer, Laurence R.; Hsu, Fan; et al. (Nucleic Acids Res., 2009)

The UCSC Genome Browser Database: 2008 update. - Karolchik, Donna; Kuhn, Robert M.; Baertsch, Robert; Barber, Galt P.; Clawson, Hiram; Diekhans, Mark; Giardine, Belinda; Harte, Rachel A.; Hinrichs, Angela S.; Hsu, Fan; Kober, Kord M.; Miller, Webb; et al. (Nucleic Acids Res., 2008)

The ENCODE Project at UC Santa Cruz. - Thomas, Daryl J.; Rosenbloom, Kate R.; Clawson, Hiram; Hinrichs, Angie S.; Trumbower, Heather; Raney, Brian J.; Karolchik, Donna; Barber, Galt P.; Harte, Rachel A.; Hillman-Jackson, Jennifer; Kuhn, Robert M.; Rhead, Brooke L.; et al. (Nucleic Acids Res., 2007)

The UCSC genome browser database: update 2007. - Kuhn, Robert M.; Karolchik, Donna; Zweig, Ann S.; Trumbower, Heather; Thomas, Daryl J.; Thakkapallayil, Archana; Sugnet, Charles W.; Stanke, Mario; Smith, Kayla E.; Siepel, Adam C.; Rosenbloom, Kate R.; Rhead, Brooke L.; et al. (Nucleic Acids Res., 2007)

Variation resources at UC Santa Cruz. - Thomas, Daryl J.; Trumbower, Heather; Kern, Andrew D.; Rhead, Brooke L.; Kuhn, Robert M.; Haussler, David; Kent, W. James (Nucleic Acids Res., 2007)

The UCSC Known Genes. - Hsu, Fan; Kent, W. James; Clawson, Hiram; Kuhn, Robert M.; Diekhans, Mark; Haussler, David (Bioinform., 2006)

The UCSC Genome Browser Database: update 2006. - Hinrichs, Angela S.; Karolchik, Donna; Baertsch, Robert; Barber, Galt P.; Bejerano, Gill; Clawson, Hiram; Diekhans, Mark; Furey, Terrence S.; Harte, Rachel A.; Hsu, Fan; Hillman-Jackson, Jennifer; Kuhn, Robert M.; et al. (Nucleic Acids Res., 2006)

The UCSC Proteome Browser. - Hsu, Fan; Pringle, Tom H.; Kuhn, Robert M.; Karolchik, Donna; Diekhans, Mark; Haussler, David; Kent, W. James (Nucleic Acids Res., 2005)

The UCSC Table Browser data retrieval tool. - Karolchik, Donna; Hinrichs, Angela S.; Furey, Terrence S.; Roskin, Krishna M.; Sugnet, Charles W.; Haussler, David; Kent, W. James (Nucleic Acids Res., 2004)

Transcriptome and Genome Conservation of Alternative Splicing Events in Humans and Mice. - Sugnet, Charles W.; Kent, W. James; Ares, Manuel; Haussler, David (2004)

The UCSC Genome Browser Database. - Karolchik, Donna; Baertsch, Robert; Diekhans, Mark; Furey, Terrence S.; Hinrichs, Angela S.; Lu, Yontao; Roskin, Krishna M.; Schwartz, Matt; Sugnet, Charles W.; Thomas, Daryl J.; Weber, Ryan J.; Haussler, David; et al. (Nucleic Acids Res., 2003)

The Intronerator: exploring introns and alternative splicing in Caenorhabditis elegans. - Kent, W. James; Zahler, Alan M. (Nucleic Acids Res., 2000)