MO-CTranS: A Unified Multi-Organ Segmentation Model Learning from Multiple Heterogeneously Labelled Datasets - Zhendi Gong; Susan T. Francis; Eleanor Cox; Stamatios N. Sotiropoulos; Dorothee P. Auer; Guoping Qiu; Andrew P. French; Xin Chen (22nd IEEE International Symposium on Biomedical Imaging, ISBI 2025, Houston, TX, USA, April 14-17, 2025, 2025)

A Unified Framework for Semi-Supervised Image Segmentation and Registration - Ruizhe Li; Grazziela Patrocinio Figueredo; Dorothee Auer; Rob A. Dineen; Paul S. Morgan; Xin Chen (22nd IEEE International Symposium on Biomedical Imaging, ISBI 2025, Houston, TX, USA, April 14-17, 2025, 2025)

A Unified Framework for Semi-Supervised Image Segmentation and Registration - Ruizhe Li; Grazziela P. Figueredo; Dorothee Auer; Robert A. Dineen; Paul S. Morgan; Xin Chen (CoRR, 2025)

MO-CTranS: A unified multi-organ segmentation model learning from multiple heterogeneously labelled datasets - Zhendi Gong; Susan T. Francis; Eleanor Cox; Stamatios N. Sotiropoulos; Dorothee P. Auer; Guoping Qiu; Andrew P. French; Xin Chen (CoRR, 2025)

MrRegNet: Multi-Resolution Mask Guided Convolutional Neural Network for Medical Image Registration with Large Deformations - Ruizhe Li; Grazziela P. Figueredo; Dorothee Auer; Christian Wagner; Xin Chen (IEEE International Symposium on Biomedical Imaging, ISBI 2024, Athens, Greece, May 27-30, 2024, 2024)

MrRegNet: Multi-resolution Mask Guided Convolutional Neural Network for Medical Image Registration with Large Deformations - Ruizhe Li; Grazziela P. Figueredo; Dorothee Auer; Christian Wagner; Xin Chen (CoRR, 2024)

Automated detection of cerebral microbleeds on MR images using knowledge distillation framework - Vaanathi Sundaresan; Christoph Arthofer; Giovanna Zamboni; Andrew G. Murchison; Robert A. Dineen; Peter M. Rothwell; Dorothee P. Auer; Chaoyue Wang; Karla L. Miller; Benjamin C. Tendler; Fidel Alfaro-Almagro; Stamatios N. Sotiropoulos; et al. (Frontiers Neuroinformatics, 2023)

Automated Detection of Candidate Subjects With Cerebral Microbleeds Using Machine Learning - Vaanathi Sundaresan; Christoph Arthofer; Giovanna Zamboni; Robert A. Dineen; Peter M. Rothwell; Stamatios N. Sotiropoulos; Dorothee P. Auer; Daniel J. Tozer; Hugh S. Markus; Karla L. Miller; Iulius Dragonu; Nikola Sprigg; et al. (Frontiers Neuroinformatics, 2021)

Image Augmentation Using a Task Guided Generative Adversarial Network for Age Estimation on Brain MRI - Ruizhe Li; Matteo Bastiani; Dorothee Auer; Christian Wagner; Xin Chen (Medical Image Understanding and Analysis - 25th Annual Conference, MIUA 2021, Oxford, United Kingdom, July 12-14, 2021, Proceedings, 2021)

Image Augmentation Using a Task Guided Generative Adversarial Network for Age Estimation on Brain MRI - Ruizhe Li; Matteo Bastiani; Dorothee Auer; Christian Wagner; Xin Chen (CoRR, 2021)

Graph Theoretic Analysis of Brain Connectomics in Multiple Sclerosis: Reliability and Relationship with Cognition - Thomas Welton; Cris S. Constantinescu; Dorothee P. Auer; Rob A. Dineen (Brain Connect., 2020)

Coordinate based meta-analysis of networks in neuroimaging studies - Christopher R. Tench; Radu Tanasescu; Cris S. Constantinescu; William J. Cottam; Dorothee P. Auer (NeuroImage, 2020)

DRU-Net: An Efficient Deep Convolutional Neural Network for Medical Image Segmentation - Mina Jafari; Dorothee Auer; Susan T. Francis; Jonathan M. Garibaldi; Xin Chen (17th IEEE International Symposium on Biomedical Imaging, ISBI 2020, Iowa City, IA, USA, April 3-7, 2020, 2020)

A Generic Ensemble Based Deep Convolutional Neural Network for Semi-Supervised Medical Image Segmentation - Ruizhe Li; Christian Wagner; Xin Chen; Dorothee Auer (17th IEEE International Symposium on Biomedical Imaging, ISBI 2020, Iowa City, IA, USA, April 3-7, 2020, 2020)

A generic ensemble based deep convolutional neural network for semi-supervised medical image segmentation - Ruizhe Li; Dorothee Auer; Christian Wagner; Xin Chen (CoRR, 2020)

DRU-net: An Efficient Deep Convolutional Neural Network for Medical Image Segmentation - Mina Jafari; Dorothee Auer; Susan T. Francis; Jonathan M. Garibaldi; Xin Chen (CoRR, 2020)

FU-net: Multi-class Image Segmentation Using Feedback Weighted U-net - Mina Jafari; Ruizhe Li; Yue Xing; Dorothee Auer; Susan T. Francis; Jonathan M. Garibaldi; Xin Chen (CoRR, 2020)

FU-Net: Multi-class Image Segmentation Using Feedback Weighted U-Net - Mina Jafari; Ruizhe Li; Yue Xing; Dorothee Auer; Susan T. Francis; Jonathan M. Garibaldi; Xin Chen (Image and Graphics - 10th International Conference, ICIG 2019, Beijing, China, August 23-25, 2019, Proceedings, Part II, 2019)

Targeted transcranial theta-burst stimulation alters fronto-insular network and prefrontal GABA - Sarina Jennifer Iwabuchi; Felix Raschke; Dorothee P. Auer; Peter F. Liddle; Sudheer T. Lankappa; Lena Palaniyappan (NeuroImage, 2017)

Coordinate based random effect size meta-analysis of neuroimaging studies - Christopher R. Tench; Radu Tanasescu; Cris S. Constantinescu; Dorothee P. Auer; William J. Cottam (NeuroImage, 2017)

Activation induced changes in GABA: Functional MRS at 7 T with MEGA-sLASER - Chen Chen; Hilmar P. Sigurdsson; Sophia E. Pépés; Dorothee P. Auer; Peter G. Morris; Paul S. Morgan; Penny A. Gowland; Stephen R. Jackson (NeuroImage, 2017)

Manganese-enhanced magnetic resonance imaging depicts brain activity in models of acute and chronic pain: A new window to study experimental spontaneous pain? - Ian M. Devonshire; J. J. Burston; L. Xu; A. Lillywhite; M. J. Prior; D. J. G. Watson; Charles M. Greenspon; Sarina Jennifer Iwabuchi; Dorothee P. Auer; Victoria Chapman (NeuroImage, 2017)

Novel Methods for Microglia Segmentation, Feature Extraction, and Classification - Yuchun Ding; Marie Christine Pardon; Alessandra Agostini; Henryk Faas; Jinming Duan; Wil O. C. Ward; Felicity Easton; Dorothee Auer; Li Bai (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

Reproducibility of Graph-Theoretic Brain Network Metrics: A Systematic Review - Thomas Welton; Daniel A. Kent; Dorothee P. Auer; Robert A. Dineen (Brain Connect., 2015)

3D Texture Analysis of Heterogeneous MRI Data for Diagnostic Classification of Childhood Brain Tumours - Ahmed E. Fetit; Jan Novák; Daniel Rodríguez; Dorothee P. Auer; Chris A. Clark; Richard G. Grundy; Tim Jaspan; Andrew C. Peet; Theodoros N. Arvanitis (Enabling Health Informatics Applications [ICIMTH 2015, Athens, Greece, July 2015], 2015)

MRI Texture Analysis in Paediatric Oncology: A Preliminary Study - Ahmed E. Fetit; Jan Novák; Daniel Rodríguez; Dorothee P. Auer; Chris A. Clark; Richard G. Grundy; Tim Jaspan; Andrew Peet; Theodoros N. Arvanitis (Informatics, Management and Technology in Healthcare [ICIMTH 2013, Athens, Greece, 5-7 July 2013], 2013)

Slow EEG pattern predicts reduced intrinsic functional connectivity in the default mode network: An inter-subject analysis - Jaroslav Hlinka; Charilaos Alexakis; Ana Diukova; Peter F. Liddle; Dorothee Auer (NeuroImage, 2010)

Pathway-based approaches to imaging genetics association studies: Wnt signaling, GSK3beta substrates and major depression - Becky Inkster; Thomas E. Nichols; Philipp G. Saemann; Dorothee P. Auer; Florian Holsboer; Pierandrea Muglia; Paul M. Matthews (NeuroImage, 2010)

Model-free functional MRI analysis for detecting low-frequency functional connectivity in the human brain - Axel Wismüller; Oliver Lange; Dorothee Auer; Gerda L. Leinsinger (Medical Imaging 2010: Computer-Aided Diagnosis, San Diego, California, United States, 13-18 February 2010, 2010)

Erratum to "3D Gabor wavelets for evaluating SPM normalization algorithm" - LinLin Shen; Li Bai; Dorothee Auer (Medical Image Anal., 2009)

Automatic Segmentation of Putamen from Brain MRI - Li Bai; Yihui Liu; Dorothee Auer; Paul S. Morgan (Proceedings of the 2006 International Conference on Image Processing, Computer Vision, & Pattern Recognition, Las Vegas, Nevada, USA, June 26-29, 2006, Volume 2, 2006)

A flexible machine learning image analysis system for high-precision computer-assisted segmentation of multispectral MRI data sets in patients with multiple sclerosis - Axel Wismüller; Anke Meyer-Bäse; Johannes Behrends; Oliver Lange; Miriana Jukic; Maximilian F. Reiser; Dorothee Auer (Proceedings of the 2006 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Arlington, VA, USA, 6-9 April 2006, 2006)

Automatic Segmentation of Putamen from Brain MRI - Yihui Liu; Li Bai; Dave Elliman; Paul Simon Morgan; Dorothee Auer (Advances in Neural Networks - ISNN 2006, Third International Symposium on Neural Networks, Chengdu, China, May 28 - June 1, 2006, Proceedings, Part III, 2006)

3D Gabor Wavelets for Evaluating Medical Image Registration Algorithms - LinLin Shen; Dorothee Auer; Li Bai (Medical Imaging and Augmented Reality, MIAR 2006, Third International Workshop, Shanghai, China, August 17-18, 2006, Proceedings, 2006)

Model-free functional MRI analysis based on unsupervised clustering - Axel Wismüller; Anke Meyer-Bäse; Oliver Lange; Dorothee Auer; Maximilian F. Reiser; DeWitt Sumners (J. Biomed. Informatics, 2004)

High trait anxiety and hyporeactivity to stress of the dorsomedial prefrontal cortex: a combined phMRI and Fos study in rats - Raffael Kalisch; Nicolas Salomé; Stefan Platzer; Alexandra Wigger; Michael Czisch; Wolfgang H. Sommer; Nicolas Singewald; Markus Heilig; Achim Berthele; Florian Holsboer; Rainer Landgraf; Dorothee P. Auer (NeuroImage, 2004)

Assessing brain activity through spatial bayesian variable selection - Michael S. Smith; Benno Pütz; Dorothee Auer; Ludwig Fahrmeir (NeuroImage, 2003)

Is the brain cortex a fractal? - Valerij G. Kiselev; Klaus R. Hahn; Dorothee P. Auer (NeuroImage, 2003)

High-Precision Computer-Assisted Segmentation of Multispectral MRI Data Sets in Patients with Multiple Sclerosis by a Flexible Machine Learning Image Analysis Approach - Axel Wismüller; Johannes Behrends; Oliver Lange; Miriana Jukic; Klaus Hahn; Maximilian F. Reiser; Dorothee Auer (Bildverarbeitung für die Medizin 2003, Algorithmen - Systeme - Anwendungen, Proceedings des Workshops vom 9. bis 11. März 2003 in Erlangen, 2003)

Model-Free Functional MRI Analysis Using Topographic Independent Component Analysis - Anke Meyer-Bäse; Thomas D. Otto; Thomas Martinetz; Dorothee Auer; Axel Wismüller (11th European Symposium on Artificial Neural Networks, ESANN 2003, Bruges, Belgium, April 23-25, 2003, Proceedings, 2003)

Topographic independent component analysis for fMRI signal detection - Anke Meyer-Bäse; Dorothee Auer; Axel Wismüller (Proceedings of the International Joint Conference on Neural Networks, IJCNN 2003, Portland, OR, USA, July 20 - 24, 2003, 2003)

Cluster Analysis of Biomedical Image Time-Series - Axel Wismüller; Oliver Lange; Dominik R. Dersch; Gerda L. Leinsinger; Klaus Hahn; Benno Pütz; Dorothee Auer (Int. J. Comput. Vis., 2002)

Altered Processing of Acoustic Stimuli during Sleep: Reduced Auditory Activation and Visual Deactivation Detected by a Combined fMRI/EEG Study - Michael Czisch; Thomas C. Wetter; Christian Kaufmann; Thomas Pollmächer; Florian Holsboer; Dorothee P. Auer (NeuroImage, 2002)

Fiber Tracking from DTI Using Linear State Space Models: Detectability of the Pyramidal Tract - Christoff Gössl; Ludwig Fahrmeir; Benno Pütz; Ludwig M. Auer; Dorothee P. Auer (NeuroImage, 2002)

Bayesian Modeling of the Hemodynamic Response Function in BOLD fMRI - C. Gössl; Ludwig Fahrmeir; Dorothee P. Auer (NeuroImage, 2001)

Blood Pressure Changes Induced by Arterial Blood Withdrawal Influence Bold Signal in Anesthesized Rats at 7 Tesla: Implications for Pharmacologic MRI - Raffael Kalisch; Gregor-Konstantin Elbel; Christoff Gössl; Michael Czisch; Dorothee P. Auer (NeuroImage, 2001)

Intensitätssegmentierung von T1-gewichteten MR-Gehirndaten über die Homogenisierung der grauen oder der weißen Materie - eine vergleichende Studie - Klaus Hahn; Karsten Rodenacker; A. Kempe; Dorothee Auer (Bildverarbeitung für die Medizin 2001: Algorithmen, Systeme, Anwendungen, Workshop Proceedings, Lübeck, Germany, March 4-6, 2001, 2001)

Segmentierung des Gehirns auf der Basis von MR-Daten - Klaus Hahn; Karsten Rodenacker; Volker Aurich; Dorothee Auer (Bildverarbeitung für die Medizin 2000: Algorithmen, Systeme, Anwendungen, Workshop Proceedings, München, Germany, March 12-14, 2000, 2000)

Hierarchical Clustering of Functional MRI Time-Series by Deterministic Annealing - Axel Wismüller; Dominik R. Dersch; Bernadette Lipinski; Klaus Hahn; Dorothee Auer (Medical Data Analysis, First International Symposium, ISMDA 2000, Frankfurt, Germany, September 29-30, 2000, Proceedings, 2000)

Generalized Correlation Ratio for Rigid Registration of 3D Ultrasound with MR Images - Alexis Roche; Xavier Pennec; Michael Rudolph; Dorothee Auer; Grégoire Malandain; Sébastien Ourselin; Ludwig M. Auer; Nicholas Ayache (Medical Image Computing and Computer-Assisted Intervention - MICCAI 2000, Third International Conference, Pittsburgh, Pennsylvania, USA, October 11-14, 2000, Proceedings, 2000)

Visualization for Planning and Simulation of Minimally Invasive Neurosurgical Procedures - Ludwig M. Auer; Arne Radetzky; C. Wimmer; Gerhard Kleinszig; F. Schroecker; Dorothee Auer; Herve Delingette; Brian L. Davies; Dietrich Peter Pretschner (Medical Image Computing and Computer-Assisted Intervention - MICCAI'99, Second International Conference, Cambridge, UK, September 19-22, 1999, Proceedings, 1999)

Neural network analysis of functional MRI time-series. Hierarchical clustering by deterministic annealing - Axel Wismüller; Dominik R. Dersch; Bernadette Lipinski; Klaus Hahn; Dorothee Auer (Bildverarbeitung für die Medizin: Algorithmen, Systeme, Anwendungen, Proceedings des Aachener Workshops, Aachen, Germany, March 26-27, 1998, 1998)

Virtual endoscopy for planning and simulation of minimally invasive neurosurgery - Ludwig M. Auer; Dorothee Auer; Jérôme F. Knoplioch (CVRMed-MRCAS'97, First Joint Conference Computer Vision, Virtual Reality and Robotics in Medicine and Medial Robotics and Computer-Assisted Surgery, Grenoble, France, March 19-22, 1997, Proceedings, 1997)