A Novel Discrete Time Series Representation With De Bruijn Graphs for Enhanced Forecasting Using TimesNet - Mert Onur Cakiroglu; Hasan Kurban; Elham Buxton; Mehmet M. Dalkilic (IEEE Access, 2025)

Multivariate de Bruijn Graphs: A Symbolic Graph Framework for Time Series Forecasting - Mert Onur Cakiroglu; Idil Bilge Altun; Hasan Kurban; Elham Buxton; Mehmet M. Dalkilic (CoRR, 2025)

An extended de Bruijn graph for feature engineering over biological sequential data - Mert Onur Cakiroglu; Hasan Kurban; Parichit Sharma; M. Oguzhan Külekci; Elham Khorasani Buxton; Maryam Raeeszadeh-Sarmazdeh; Mehmet M. Dalkilic (Mach. Learn. Sci. Technol., 2024)

A Novel Discrete Time Series Representation with De Bruijn Graphs for Enhanced Forecasting Using TimesNet (Extended Abstract) - Mert Onur Cakiroglu; Hasan Kurban; Elham Khorasani Buxton; Mehmet M. Dalkilic (11th IEEE International Conference on Data Science and Advanced Analytics, DSAA 2024, San Diego, CA, USA, October 6-10, 2024, 2024)

p-ClustVal: A Novel p-Adic Approach for Enhanced Clustering of High-Dimensional scRNASeq Data (Extended Abstract) - Parichit Sharma; Sarthak Mishra; Hasan Kurban; Mehmet M. Dalkilic (11th IEEE International Conference on Data Science and Advanced Analytics, DSAA 2024, San Diego, CA, USA, October 6-10, 2024, 2024)

Novel NBA Fantasy League driven by Engineered Team Chemistry and Scaled Position Statistics - Ganesh Arkanath; Nishad Gupta; Hasan Kurban; Parichit Sharma; K. R. Madhavan; Elham Khorasani Buxton; Mehmet M. Dalkilic (IEEE International Conference on Big Data, BigData 2023, Sorrento, Italy, December 15-18, 2023, 2023)

ccImpute: an accurate and scalable consensus clustering based algorithm to impute dropout events in the single-cell RNA-seq data - Marcin Malec; Hasan Kurban; Mehmet M. Dalkilic (BMC Bioinform., 2022)

DCEM: An R package for clustering big data via data-centric modification of Expectation Maximization - Parichit Sharma; Hasan Kurban; Mehmet M. Dalkilic (SoftwareX, 2022)

Applying Class-to-Class Siamese Networks to Explain Classifications with Supportive and Contrastive Cases - Xiaomeng Ye; David Leake; William Huibregtse; Mehmet M. Dalkilic (Case-Based Reasoning Research and Development - 28th International Conference, ICCBR 2020, Salamanca, Spain, June 8-12, 2020, Proceedings, 2020)

Using Data Analytics to Optimize Public Transportation on a College Campus - Kurt Zimmer; Hasan Kurban; Mark Jenne; Logan Keating; Perry Maull; Mehmet M. Dalkilic (5th IEEE International Conference on Data Science and Advanced Analytics, DSAA 2018, Turin, Italy, October 1-3, 2018, 2018)

Biostatistics and Data Analysis - Mehmet M. Dalkiliç (Encyclopedia of Database Systems, Second Edition, 2018)

Gene Expression Arrays - Mehmet M. Dalkiliç (Encyclopedia of Database Systems, Second Edition, 2018)

Using data to build a better EM: EM* for big data - Hasan Kurban; Mark Jenne; Mehmet M. Dalkilic (Int. J. Data Sci. Anal., 2017)

Case Study: Clustering Big Stellar Data with EM - Hasan Kurban; Can Kockan; Mark Jenne; Mehmet M. Dalkilic (Proceedings of the Fourth IEEE/ACM International Conference on Big Data Computing, Applications and Technologies, BDCAT 2017, Austin, TX, USA, December 05 - 08, 2017, 2017)

A novel approach to optimization of iterative machine learning algorithms: Over heap structure - Hasan Kurban; Mehmet M. Dalkilic (2017 IEEE International Conference on Big Data (IEEE BigData 2017), Boston, MA, USA, December 11-14, 2017, 2017)

Improving expectation maximization algorithm over stellar data - Hasan Kurban; Can Kockan; Mark Jenne; Mehmet M. Dalkilic (2017 IEEE International Conference on Big Data (IEEE BigData 2017), Boston, MA, USA, December 11-14, 2017, 2017)

SUPCRTBL: A revised and extended thermodynamic dataset and software package of SUPCRT92 - Kurt Zimmer; Yilun Zhang; Peng Lu; Yanyan Chen; Guanru Zhang; Mehmet M. Dalkilic; Chen Zhu (Comput. Geosci., 2016)

EM*: An EM Algorithm for Big Data - Hasan Kurban; Mark Jenne; Mehmet M. Dalkilic (2016 IEEE International Conference on Data Science and Advanced Analytics, DSAA 2016, Montreal, QC, Canada, October 17-19, 2016, 2016)

Red-RF: Reduced Random Forest for Big Data Using Priority Voting & Dynamic Data Reduction - Hussein Mohsen; Hasan Kurban; Kurt Zimmer; Mark Jenne; Mehmet M. Dalkiliç (2015 IEEE International Congress on Big Data, New York City, NY, USA, June 27 - July 2, 2015, 2015)

Feature frequency profiles for automatic sample identification using PySpark - Gregory J. Zynda; Niall Gaffney; Mehmet M. Dalkilic; Matthew W. Vaughn (Proceedings of the 5th Workshop on Python for High-Performance and Scientific Computing, PyHPC 2015, Austin, Texas, USA, November 15, 2015, 2015)

Studying the Milky Way Galaxy Using ParaHeap-k - Mark Jenne; Owen Boberg; Hasan Kurban; Mehmet M. Dalkilic (Computer, 2014)

A new set of Random Forests with varying dynamic data reduction and voting techniques - Hussein Mohsen; Hasan Kurban; Mark Jenne; Mehmet M. Dalkilic (International Conference on Data Science and Advanced Analytics, DSAA 2014, Shanghai, China, October 30 - November 1, 2014, 2014)

WIGM: Discovery of Subgraph Patterns in a Large Weighted Graph - Jiong Yang; Wei Su; Shirong Li; Mehmet M. Dalkiliç (Proceedings of the Twelfth SIAM International Conference on Data Mining, Anaheim, California, USA, April 26-28, 2012, 2012)

Data-Driven Ontologies - James C. Costello; Daniel R. Schrider; Jeff Gehlhausen; Mehmet M. Dalkilic (Biocomputing 2009: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 5-9 January 2009, 2009)

A Measurement Ontology Generalizable for Emerging Domain Applications on the Semantic Web - Henry M. Kim; Arijit Sengupta; Mark S. Fox; Mehmet M. Dalkilic (Database Technologies: Concepts, Methodologies, Tools, and Applications (4 Volumes), 2009)

Biostatistics and Data Analysis - Mehmet M. Dalkiliç (Encyclopedia of Database Systems, 2009)

Gene Expression Arrays - Mehmet M. Dalkilic (Encyclopedia of Database Systems, 2009)

A Measurement Ontology Generalizable for Emerging Domain Applications on the Semantic Web - Henry M. Kim; Arijit Sengupta; Mark S. Fox; Mehmet M. Dalkilic (J. Database Manag., 2007)

Using Drosophila melanogaster Data to Discover Disease-Related Protein Interactions in Humans - James C. Costello; Jade E. Buchanan-Carter; Mehmet M. Dalkilic; Justen Andrews (Proceedings of the 2007 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2007, Honolulu, Hawaii, USA, April 1-5, 2007, Part of the IEEE Symposium Series on Computational Intelligence (IEEE SSCI 2007), 2007)

COMPAM : visualization of combining pairwise alignments for multiple genomes - Do-Hoon Lee; Jeong-Hyeon Choi; Mehmet M. Dalkilic; Sun Kim (Bioinform., 2006)

High-Performance Direct Pairwise Comparison of Large Genomic Sequences - Christopher Mueller; Mehmet M. Dalkilic; Andrew Lumsdaine (IEEE Trans. Parallel Distributed Syst., 2006)

Trust Establishment in Data Sharing: An Incentive Model for Biodiversity Information Systems - Sukamol Srikwan; Markus Jakobsson; Andrew Albrecht; Mehmet M. Dalkilic (2nd International ICST Conference on Collaborative Computing: Networking, Applications and Worksharing, CollaborateCom 2006, Atlanta, GA, USA, November 17-20, 2006, 2006)

Using Compression to Identify Classes of Inauthentic Texts - Mehmet M. Dalkilic; Wyatt T. Clark; James C. Costello; Predrag Radivojac (Proceedings of the Sixth SIAM International Conference on Data Mining, April 20-22, 2006, Bethesda, MD, USA, 2006)

An Approximate de Bruijn Graph Approach to Multiple Local Alignment and Motif Discovery in Protein Sequences - Rupali Patwardhan; Haixu Tang; Sun Kim; Mehmet M. Dalkilic (Data Mining and Bioinformatics, First International Workshop, VDMB 2006, Seoul, Korea, September 11, 2006, Revised Selected Papers, 2006)

Data Mining and Bioinformatics, First International Workshop, VDMB 2006, Seoul, Korea, September 11, 2006, Revised Selected Papers - Mehmet M. Dalkilic; Sun Kim; Jiong Yang (Springer, 2006)

An Architecture and Application for Integrating Curation Data at the Residue Level for Proteins - Mehmet M. Dalkilic (Data Integration in the Life Sciences, Second InternationalWorkshop, DILS 2005, San Diego, CA, USA, July 20-22, 2005, Proceedings, 2005)

High-Performance Direct Pairwise Comparison of Large Genomic Sequences - Christopher Mueller; Mehmet M. Dalkilic; Andrew Lumsdaine (19th International Parallel and Distributed Processing Symposium (IPDPS 2005), CD-ROM / Abstracts Proceedings, 4-8 April 2005, Denver, CO, USA, 2005)

Design and evaluation of CATPA: curation and alignment tool for protein analysis - Mehmet M. Dalkilic; Arijit Sengupta (Proceedings of the 2005 ACM Symposium on Applied Computing (SAC), Santa Fe, New Mexico, USA, March 13-17, 2005, 2005)

Circle: design and implementation of a classifier based on circuit minimization - Mehmet M. Dalkilic; Arijit Sengupta (Proceedings of the 2005 ACM Symposium on Applied Computing (SAC), Santa Fe, New Mexico, USA, March 13-17, 2005, 2005)

A logic-theoretic classifier called Circle - Mehmet M. Dalkilic; Arijit Sengupta (8th International Conference on Control, Automation, Robotics and Vision, ICARCV 2004, Kunming, China, 6-9 December 2004, Proceedings, 2004)

Guiding motif discovery by iterative pattern refinement - Zhiping Wang; Mehmet M. Dalkilic; Sun Kim (Proceedings of the 2004 ACM Symposium on Applied Computing (SAC), Nicosia, Cyprus, March 14-17, 2004, 2004)

Semantic thumbnails: a novel method for summarizing document collections - Arijit Sengupta; Mehmet M. Dalkilic; James C. Costello (Proceedings of the 22nd Annual International Conference on Design of Communication: The Engineering of Quality Documentation, SIGDOC 2004, Memphis, Tennessee, USA, October 10-13, 2004, 2004)

Motif Discovery from Large Number of Sequences: A Case Study with Disease Resistance Genes in Arabidopsos thaliana - Irfan Gunduz; Sihui Zhao; Mehmet M. Dalkilic; Sun Kim (Proceedings of the International Conference on Mathematics and Engineering Techniques in Medicine and Biological Scienes, METMBS '03, June 23 - 26, 2003, Las Vegas, Nevada, USA, 2003)

Improving Query Evaluation with Approximate Functional Dependency Based Decompositions - Chris Giannella; Mehmet M. Dalkilic; Dennis P. Groth; Edward L. Robertson (Advances in Databases, 19th British National Conference on Databases, BNCOD 19, Sheffield, UK, July 17-19, 2002, Proceedings, 2002)

DSQL - An SQL for Structured Documents - Arijit Sengupta; Mehmet M. Dalkilic (Advanced Information Systems Engineering, 14th International Conference, CAiSE 2002, Toronto, Canada, May 27-31, 2002, Proceedings, 2002)

Information Dependencies - Mehmet M. Dalkilic; Edward L. Robertson (Proceedings of the Nineteenth ACM SIGMOD-SIGACT-SIGART Symposium on Principles of Database Systems, May 15-17, 2000, Dallas, Texas, USA, 2000)

CE: the Classifier-Estimator Framework for Data Mining - Mehmet M. Dalkilic; Edward L. Robertson; Dirk Van Gucht (Data Mining and Reverse Engineering: Searching for Semantics, IFIP TC2/WG2.6 Seventh Conference on Database Semantics (DS-7), October 7-10, 1997, Leysin, Switzerland, 1997)