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Jonathan S. Mason
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2020 – today
- 2020
- [j13]Francesca Deflorian
, Laura Pérez-Benito
, Eelke B. Lenselink
, Miles Congreve
, Herman W. T. van Vlijmen
, Jonathan S. Mason, Chris de Graaf
, Gary Tresadern
:
Accurate Prediction of GPCR Ligand Binding Affinity with Free Energy Perturbation. J. Chem. Inf. Model. 60(11): 5563-5579 (2020)
2010 – 2019
- 2019
- [j12]Giulio Mattedi
, Francesca Deflorian, Jonathan S. Mason, Chris de Graaf, Francesco L. Gervasio
:
Understanding Ligand Binding Selectivity in a Prototypical GPCR Family. J. Chem. Inf. Model. 59(6): 2830-2836 (2019) - 2016
- [j11]Dahlia R. Weiss, Andrea Bortolato, Benjamin G. Tehan, Jonathan S. Mason:
GPCR-Bench: A Benchmarking Set and Practitioners' Guide for G Protein-Coupled Receptor Docking. J. Chem. Inf. Model. 56(4): 642-651 (2016) - 2015
- [j10]Andrea Bortolato, Francesca Deflorian, Dahlia R. Weiss, Jonathan S. Mason:
Decoding the Role of Water Dynamics in Ligand-Protein Unbinding: CRF1R as a Test Case. J. Chem. Inf. Model. 55(9): 1857-1866 (2015) - 2013
- [j9]Andrea Bortolato, Benjamin G. Tehan, Michael S. Bodnarchuk
, Jonathan W. Essex, Jonathan S. Mason:
Water Network Perturbation in Ligand Binding: Adenosine A2A Antagonists as a Case Study. J. Chem. Inf. Model. 53(7): 1700-1713 (2013) - 2010
- [j8]Simone Sciabola, Robert V. Stanton, James E. J. Mills, Maria M. Flocco, Massimo Baroni
, Gabriele Cruciani
, Francesca Perruccio, Jonathan S. Mason:
High-Throughput Virtual Screening of Proteins Using GRID Molecular Interaction Fields. J. Chem. Inf. Model. 50(1): 155-169 (2010)
2000 – 2009
- 2007
- [j7]Massimo Baroni
, Gabriele Cruciani
, Simone Sciabola, Francesca Perruccio, Jonathan S. Mason:
A Common Reference Framework for Analyzing/Comparing Proteins and Ligands. Fingerprints for Ligands And Proteins (FLAP): Theory and Application. J. Chem. Inf. Model. 47(2): 279-294 (2007) - [j6]Siew K. Yeap, Rosalind J. Walley
, Michael Snarey, Willem P. van Hoorn
, Jonathan S. Mason:
Designing Compound Subsets: Comparison of Random and Rational Approaches Using Statistical Simulation. J. Chem. Inf. Model. 47(6): 2149-2158 (2007) - 2004
- [j5]Andrew C. Good, Sung-Jin Cho, Jonathan S. Mason:
Descriptors you can count on? Normalized and filtered pharmacophore descriptors for virtual screening. J. Comput. Aided Mol. Des. 18(7): 523-527 (2004)
1990 – 1999
- 1999
- [c1]Jonathan S. Mason, Daniel L. Cheney:
Ligand-Receptor 3-D Similarity Studies Using Multiple 4-Point Pharmacophores. Pacific Symposium on Biocomputing 1999: 456-467 - 1998
- [j4]Paul R. Menard, Richard A. Lewis
, Jonathan S. Mason:
Rational Screening Set Design and Compound Selection: Cascaded Clustering. J. Chem. Inf. Comput. Sci. 38(3): 497-505 (1998) - [j3]Paul R. Menard, Jonathan S. Mason, Isabelle Morize, Susanne Bauerschmidt:
Chemistry Space Metrics in Diversity Analysis, Library Design, and Compound Selection. J. Chem. Inf. Comput. Sci. 38(6): 1204-1213 (1998) - 1997
- [j2]Richard A. Lewis, Jonathan S. Mason, Iain M. McLay:
Similarity Measures for Rational Set Selection and Analysis of Combinatorial Libraries: The Diverse Property-Derived (DPD) Approach. J. Chem. Inf. Comput. Sci. 37(3): 599-614 (1997) - 1996
- [j1]Stephen D. Pickett, Jonathan S. Mason, Iain M. McLay:
Diversity Profiling and Design Using 3D Pharmacophores: Pharmacophore-Derived Queries (PDQ). J. Chem. Inf. Comput. Sci. 36(6): 1214-1223 (1996)
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