Regulus infers signed regulatory relations from few samples' information using discretization and likelihood constraints. - Louarn, Marine; Collet, Guillaume; Barré, Ève; Fest, Thierry; Dameron, Olivier; Siegel, Anne; Chatonnet, Fabrice (PLoS Comput. Biol., 2024)

Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks. - Prigent, Sylvain; Frioux, Clémence; Dittami, Simon M.; Thiele, Sven; Larhlimi, Abdelhalim; Collet, Guillaume; Gutknecht, Fabien; Got, Jeanne; Eveillard, Damien; Bourdon, Jérémie; Plewniak, Frédéric; Tonon, Thierry; et al. (PLoS Comput. Biol., 2017)

Commet: Comparing and combining multiple metagenomic datasets. - Maillet, Nicolas; Collet, Guillaume; Vannier, Thomas; Lavenier, Dominique; Peterlongo, Pierre (2014)

Extending the Metabolic Network of Ectocarpus Siliculosus Using Answer Set Programming. - Collet, Guillaume; Eveillard, Damien; Gebser, Martin; Prigent, Sylvain; Schaub, Torsten; Siegel, Anne; Thiele, Sven (2013)

Local protein threading by Mixed Integer Programming. - Collet, Guillaume; Andonov, Rumen; Yanev, Nicola; Gibrat, Jean-François (Discret. Appl. Math., 2011)

Alignements locaux pour la reconnaissance de repliements des protéines par programmation linéaire en nombres entiers. (Protein Fold Recognition by Mixed Integer Programming). - Collet, Guillaume (2010)

Protein Threading. - Collet, Guillaume; Andonov, Rumen; Yanev, Nicola; Gibrat, Jean-François (2009)

Recent Advances in Solving the Protein Threading Problem. - Andonov, Rumen; Collet, Guillaume; Gibrat, Jean-François; Marin, Antoine; Poirriez, Vincent; Yanev, Nicola (2007)

Recent Advances in Solving the Protein Threading Problem - Andonov, Rumen; Collet, Guillaume; Gibrat, Jean-François; Marin, Antoine; Poirriez, Vincent; Yanev, Nicola (CoRR, 2007)