Regulus infers signed regulatory relations from few samples' information using discretization and likelihood constraints - Marine Louarn; Guillaume Collet; Ève Barré; Thierry Fest; Olivier Dameron; Anne Siegel; Fabrice Chatonnet (PLoS Comput. Biol., 2024)

Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks - Sylvain Prigent; Clémence Frioux; Simon M. Dittami; Sven Thiele; Abdelhalim Larhlimi; Guillaume Collet; Fabien Gutknecht; Jeanne Got; Damien Eveillard; Jérémie Bourdon; Frédéric Plewniak; Thierry Tonon; et al. (PLoS Comput. Biol., 2017)

Commet: Comparing and combining multiple metagenomic datasets - Nicolas Maillet; Guillaume Collet; Thomas Vannier; Dominique Lavenier; Pierre Peterlongo (2014 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2014, Belfast, United Kingdom, November 2-5, 2014, 2014)

Extending the Metabolic Network of Ectocarpus Siliculosus Using Answer Set Programming - Guillaume Collet; Damien Eveillard; Martin Gebser; Sylvain Prigent; Torsten Schaub; Anne Siegel; Sven Thiele (Logic Programming and Nonmonotonic Reasoning, 12th International Conference, LPNMR 2013, Corunna, Spain, September 15-19, 2013. Proceedings, 2013)

Local protein threading by Mixed Integer Programming - Guillaume Collet; Rumen Andonov; Nicola Yanev; Jean-François Gibrat (Discret. Appl. Math., 2011)

Alignements locaux pour la reconnaissance de repliements des protéines par programmation linéaire en nombres entiers. (Protein Fold Recognition by Mixed Integer Programming) - Guillaume Collet (University of Rennes 1, France, 2010)

Protein Threading - Guillaume Collet; Rumen Andonov; Nicola Yanev; Jean-François Gibrat (Proceedings of the 8th Cologne-Twente Workshop on Graphs and Combinatorial Optimization, CTW 2009, Paris, France, June 2-4 2009, 2009)

Recent Advances in Solving the Protein Threading Problem - Rumen Andonov; Guillaume Collet; Jean-François Gibrat; Antoine Marin; Vincent Poirriez; Nicola Yanev (Grid Computing for Bioinformatics and Computational Biology, 2007)

Recent Advances in Solving the Protein Threading Problem - Rumen Andonov; Guillaume Collet; Jean-François Gibrat; Antoine Marin; Vincent Poirriez; Nicola Yanev (CoRR, 2007)