Bicycle: a bioinformatics pipeline to analyze bisulfite sequencing data. - Graña, Osvaldo; López-Fernández, Hugo; Fdez-Riverola, Florentino; Pisano, David G.; Glez-Peña, Daniel (Bioinform., 2018)

RUbioSeq+: An Application that Executes Parallelized Pipelines to Analyse Next-Generation Sequencing Data. - Rubio-Camarillo, Miriam; López-Fernández, Hugo; Gómez-López, Gonzalo; Carro, Angel; Fernández, José María; Fdez-Riverola, Florentino; Glez-Peña, Daniel; Pisano, David G. (2016)

miRGate: a curated database of human, mouse and rat miRNA-mRNA targets. - León, Eduardo Andrés; González-Peña, Daniel; Gómez-López, Gonzalo; Pisano, David G. (Database J. Biol. Databases Curation, 2015)

A New Bioinformatic Pipeline to Address the Most Common Requirements in RNA-seq Data Analysis. - Graña, Osvaldo; Rubio-Camarillo, Miriam; Fdez-Riverola, Florentino; Pisano, David G.; Glez-Peña, Daniel (2015)

RUbioSeq: a suite of parallelized pipelines to automate exome variation and bisulfite-seq analyses. - Rubio-Camarillo, Miriam; Gómez-López, Gonzalo; Fernández, José María; Valencia, Alfonso; Pisano, David G. (Bioinform., 2013)

Select Your SNPs (SYSNPs): a web tool for automatic and massive selection of SNPs. - Lorente-Galdos, Belén; Medina, Ignacio; Morcillo-Suarez, Carlos; Heredia, Txema; Carreño-Torres, Angel; Sangros, Ricardo; Alegre, Josep; Pita, Guillermo; Vellalta, Gemma; Malats, Núria; Pisano, David G.; Dopazo, Joaquín; et al. (Int. J. Data Min. Bioinform., 2012)

Applying AIBench Framework to Develop Rich User Interfaces in NGS Studies. - López-Fernández, Hugo; Glez-Peña, Daniel; Reboiro-Jato, Miguel; Gómez-López, Gonzalo; Pisano, David G.; Fdez-Riverola, Florentino (2012)

PileLine: a toolbox to handle genome position information in next-generation sequencing studies. - Glez-Peña, Daniel; Gómez-López, Gonzalo; Reboiro-Jato, Miguel; Fdez-Riverola, Florentino; Pisano, David G. (BMC Bioinform., 2011)

PileLineGUI: a desktop environment for handling genome position files in next-generation sequencing studies. - López-Fernández, Hugo; Glez-Peña, Daniel; Reboiro-Jato, Miguel; Gómez-López, Gonzalo; Pisano, David G.; Fdez-Riverola, Florentino (Nucleic Acids Res., 2011)

An Intuitive Workflow to Retrieve Somatic Mutations in Next Generation Sequencing Studies. - Glez-Peña, Daniel; Reboiro-Jato, Miguel; Fdez-Riverola, Florentino; Pisano, David G.; Gómez-López, Gonzalo (2011)

Building a GATK-Based Tool for Methylation Analysis in Next-Generation Bisulfite Sequencing Experiments. - Glez-Peña, Daniel; Graña, Osvaldo; Fdez-Riverola, Florentino; Pisano, David G. (2011)

EPIQuest: A Multiuser and Multiproject Web Tool to Build Online Forms for Biomedical Studies. - Márquez-Cid, M.; Comesaña, G.; Milne, R.; Andrés, G.; Malats, Núria; Pisano, David G. (2011)

PathJam: a new service for integrating biological pathway information. - Glez-Peña, Daniel; Reboiro-Jato, Miguel; Domínguez, Rubén; Gómez-López, Gonzalo; Pisano, David G.; Fdez-Riverola, Florentino (J. Integr. Bioinform., 2010)

waviCGH: a web application for the analysis and visualization of genomic copy number alterations. - Carro, Angel; Rico, Daniel; Rueda, Oscar M.; Díaz-Uriarte, Ramón; Pisano, David G. (Nucleic Acids Res., 2010)

The EMBRACE web service collection. - Pettifer, Steve; Ison, Jon C.; Kalas, Matús; Thorne, Dave; McDermott, Philip; Jonassen, Inge; Liaquat, Ali; Fernández, José María; Rodriguez, José Manuel; Pisano, David G.; Blanchet, Christophe; Uludag, Mahmut; et al. (Nucleic Acids Res., 2010)

PathAgent: Multi-agent System for Updated Pathway Information Integration. - Reboiro-Jato, Miguel; Glez-Peña, Daniel; Domínguez, Rubén; Gómez-López, Gonzalo; Pisano, David G.; Campos, Celso; Fdez-Riverola, Florentino (2010)

WhichGenes: a web-based tool for gathering, building, storing and exporting gene sets with application in gene set enrichment analysis. - Glez-Peña, Daniel; Gómez-López, Gonzalo; Pisano, David G.; Fdez-Riverola, Florentino (Nucleic Acids Res., 2009)

Current Efforts to Integrate Biological Pathway Information. - Glez-Peña, Daniel; Domínguez, Rubén; Gómez-López, Gonzalo; Pisano, David G.; Fdez-Riverola, Florentino (2009)

CARGO: a web portal to integrate customized biological information. - Cases, Ildefonso; Pisano, David G.; León, Eduardo Andrés; Carro, Angel; Fernández, José María; Gómez-López, Gonzalo; Rodriguez, José Manuel; Vera, Jaime F.; Valencia, Alfonso; Rojas, Ana María (Nucleic Acids Res., 2007)