Bicycle: a bioinformatics pipeline to analyze bisulfite sequencing data - Osvaldo Graña; Hugo López-Fernández; Florentino Fdez-Riverola; David G. Pisano; Daniel Glez-Peña (Bioinform., 2018)

RUbioSeq+: An Application that Executes Parallelized Pipelines to Analyse Next-Generation Sequencing Data - Miriam Rubio-Camarillo; Hugo López-Fernández; Gonzalo Gómez-López; Angel Carro; José María Fernández; Florentino Fdez-Riverola; Daniel Glez-Peña; David G. Pisano (10th International Conference on Practical Applications of Computational Biology & Bioinformatics, PACBB 2016, Sevilla, Spain, 1-3 June 2016, 2016)

miRGate: a curated database of human, mouse and rat miRNA-mRNA targets - Eduardo Andrés León; Daniel González-Peña; Gonzalo Gómez-López; David G. Pisano (Database J. Biol. Databases Curation, 2015)

A New Bioinformatic Pipeline to Address the Most Common Requirements in RNA-seq Data Analysis - Osvaldo Graña; Miriam Rubio-Camarillo; Florentino Fdez-Riverola; David G. Pisano; Daniel Glez-Peña (9th International Conference on Practical Applications of Computational Biology and Bioinformatics, PACBB 2015, 3-5 June, 2015, Salamanca, Spain, 2015)

RUbioSeq: a suite of parallelized pipelines to automate exome variation and bisulfite-seq analyses - Miriam Rubio-Camarillo; Gonzalo Gómez-López; José María Fernández; Alfonso Valencia; David G. Pisano (Bioinform., 2013)

Select Your SNPs (SYSNPs): a web tool for automatic and massive selection of SNPs - Belén Lorente-Galdos; Ignacio Medina; Carlos Morcillo-Suarez; Txema Heredia; Angel Carreño-Torres; Ricardo Sangros; Josep Alegre; Guillermo Pita; Gemma Vellalta; Núria Malats; David G. Pisano; Joaquín Dopazo; et al. (Int. J. Data Min. Bioinform., 2012)

Applying AIBench Framework to Develop Rich User Interfaces in NGS Studies - Hugo López-Fernández; Daniel Glez-Peña; Miguel Reboiro-Jato; Gonzalo Gómez-López; David G. Pisano; Florentino Fdez-Riverola (6th International Conference on Practical Applications of Computational Biology & Bioinformatics, Salamanca, Spain, 2012)

PileLine: a toolbox to handle genome position information in next-generation sequencing studies - Daniel Glez-Peña; Gonzalo Gómez-López; Miguel Reboiro-Jato; Florentino Fdez-Riverola; David G. Pisano (BMC Bioinform., 2011)

PileLineGUI: a desktop environment for handling genome position files in next-generation sequencing studies - Hugo López-Fernández; Daniel Glez-Peña; Miguel Reboiro-Jato; Gonzalo Gómez-López; David G. Pisano; Florentino Fdez-Riverola (Nucleic Acids Res., 2011)

An Intuitive Workflow to Retrieve Somatic Mutations in Next Generation Sequencing Studies - Daniel Glez-Peña; Miguel Reboiro-Jato; Florentino Fdez-Riverola; David G. Pisano; Gonzalo Gómez-López (5th International Conference on Practical Applications of Computational Biology & Bioinformatics, PACBB 2011, April 6-8, 2011, Salamanca, Spain, 2011)

Building a GATK-Based Tool for Methylation Analysis in Next-Generation Bisulfite Sequencing Experiments - Daniel Glez-Peña; Osvaldo Graña; Florentino Fdez-Riverola; David G. Pisano (5th International Conference on Practical Applications of Computational Biology & Bioinformatics, PACBB 2011, April 6-8, 2011, Salamanca, Spain, 2011)

EPIQuest: A Multiuser and Multiproject Web Tool to Build Online Forms for Biomedical Studies - M. Márquez-Cid; G. Comesaña; R. Milne; G. Andrés; Núria Malats; David G. Pisano (5th International Conference on Practical Applications of Computational Biology & Bioinformatics, PACBB 2011, April 6-8, 2011, Salamanca, Spain, 2011)

PathJam: a new service for integrating biological pathway information - Daniel Glez-Peña; Miguel Reboiro-Jato; Rubén Domínguez; Gonzalo Gómez-López; David G. Pisano; Florentino Fdez-Riverola (J. Integr. Bioinform., 2010)

waviCGH: a web application for the analysis and visualization of genomic copy number alterations - Angel Carro; Daniel Rico; Oscar M. Rueda; Ramón Díaz-Uriarte; David G. Pisano (Nucleic Acids Res., 2010)

The EMBRACE web service collection - Steve Pettifer; Jon C. Ison; Matús Kalas; Dave Thorne; Philip McDermott; Inge Jonassen; Ali Liaquat; José María Fernández; José Manuel Rodriguez; David G. Pisano; Christophe Blanchet; Mahmut Uludag; et al. (Nucleic Acids Res., 2010)

PathAgent: Multi-agent System for Updated Pathway Information Integration - Miguel Reboiro-Jato; Daniel Glez-Peña; Rubén Domínguez; Gonzalo Gómez-López; David G. Pisano; Celso Campos; Florentino Fdez-Riverola (Trends in Practical Applications of Agents and Multiagent Systems - 8th International Conference on Practical Applications of Agents and Multiagent Systems, PAAMS 2010 Special Sessions and Workshops, Salamanca, Spain, 26-28 April 2010, 2010)

WhichGenes: a web-based tool for gathering, building, storing and exporting gene sets with application in gene set enrichment analysis - Daniel Glez-Peña; Gonzalo Gómez-López; David G. Pisano; Florentino Fdez-Riverola (Nucleic Acids Res., 2009)

Current Efforts to Integrate Biological Pathway Information - Daniel Glez-Peña; Rubén Domínguez; Gonzalo Gómez-López; David G. Pisano; Florentino Fdez-Riverola (Distributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, and Ambient Assisted Living, 10th International Work-Conference on Artificial Neural Networks, IWANN 2009 Workshops, Salamanca, Spain, June 10-12, 2009. Proceedings, Part II, 2009)

CARGO: a web portal to integrate customized biological information - Ildefonso Cases; David G. Pisano; Eduardo Andrés León; Angel Carro; José María Fernández; Gonzalo Gómez-López; José Manuel Rodriguez; Jaime F. Vera; Alfonso Valencia; Ana María Rojas (Nucleic Acids Res., 2007)