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2020 – today
- 2025
[j9]Timothé Rouzé, Igor Martayan, Camille Marchet, Antoine Limasset:
Fractional hitting sets for efficient multiset sketching. Algorithms Mol. Biol. 20(1): 1 (2025)- 2024
- [j8]Haoliang Xue
, Mélina Gallopin, Camille Marchet, Ha N. Nguyen, Yunfeng Wang, Antoine Lainé, Chloé Bessiere, Daniel Gautheret:
KaMRaT: a C++ toolkit for k-mer count matrix dimension reduction. Bioinform. 40(3) (2024) - [j7]Igor Martayan, Bastien Cazaux, Antoine Limasset, Camille Marchet:
Conway-Bromage-Lyndon (CBL): an exact, dynamic representation of k-mer sets. Bioinform. 40(Supplement_1): i48-i57 (2024) - [c4]Khodor Hannoush, Camille Marchet, Pierre Peterlongo:
Cdbgtricks: Strategies to update a compacted de Bruijn graph. PSC 2024: 86-103 - [i4]Florian Ingels, Camille Marchet, Mikaël Salson:
On the number of k-mers admitting a given lexicographical minimizer. CoRR abs/2412.17492 (2024) - 2023
- [j6]Camille Marchet, Antoine Limasset:
Scalable sequence database search using partitioned aggregated Bloom comb trees. Bioinform. 39(Supplement-1): 252-259 (2023) - [c3]Timothé Rouzé, Igor Martayan, Camille Marchet, Antoine Limasset:
Fractional Hitting Sets for Efficient and Lightweight Genomic Data Sketching. WABI 2023: 15:1-15:27 - 2021
- [j5]Camille Marchet, Maël Kerbiriou, Antoine Limasset:
BLight: efficient exact associative structure for k-mers. Bioinform. 37(18): 2858-2865 (2021) - 2020
- [j4]Leandro Lima, Camille Marchet, Ségolène Caboche, Corinne Da Silva, Benjamin Istace, Jean-Marc Aury, Hélène Touzet, Rayan Chikhi:
Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data. Briefings Bioinform. 21(4): 1164-1181 (2020) - [j3]Camille Marchet, Zamin Iqbal, Daniel Gautheret, Mikaël Salson, Rayan Chikhi:
REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets. Bioinform. 36(Supplement-1): i177-i185 (2020) - [j2]Camille Marchet, Lolita Lecompte, Antoine Limasset, Lucie Bittner, Pierre Peterlongo:
A resource-frugal probabilistic dictionary and applications in bioinformatics. Discret. Appl. Math. 274: 92-102 (2020)
2010 – 2019
- 2018
- [b1]Camille Marchet:
From reads to transcripts: de novo methods for the analysis of transcriptome second and third generation sequencing. (Des lectures aux transcrits: méthodes de novo pour l'analyse du séquençage des transcriptomes de deuxième et troisième génération). University of Rennes 1, France, 2018 - 2017
- [j1]Leandro Lima, Blerina Sinaimeri, Gustavo Sacomoto, Hélène Lopez-Maestre, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix:
Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads. Algorithms Mol. Biol. 12(1): 2:1-2:19 (2017) - [i3]Camille Marchet, Lolita Lecompte, Antoine Limasset, Lucie Bittner, Pierre Peterlongo:
A resource-frugal probabilistic dictionary and applications in bioinformatics. CoRR abs/1703.00667 (2017) - 2016
- [c2]Camille Marchet, Antoine Limasset, Lucie Bittner, Pierre Peterlongo:
A Resource-frugal Probabilistic Dictionary and Applications in (Meta)Genomics. Stringology 2016: 85-97 - [i2]Camille Marchet, Antoine Limasset, Lucie Bittner, Pierre Peterlongo:
A resource-frugal probabilistic dictionary and applications in (meta)genomics. CoRR abs/1605.08319 (2016) - 2014
- [c1]Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix:
Navigating in a Sea of Repeats in RNA-seq without Drowning. WABI 2014: 82-96 - [i1]Gustavo Sacomoto, Blerina Sinaimeri, Camille Marchet, Vincent Miele, Marie-France Sagot, Vincent Lacroix:
Navigating in a sea of repeats in RNA-seq without drowning. CoRR abs/1406.1022 (2014)
Coauthor Index
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