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2020 – today
- 2023
[c43]Chenyu Zhang, Honglin Wang, Seung-Hyun Hong, Riqiang Yan, Dong-Guk Shin:
Using Biological Processes as Prior Knowledge Identifies New Microglial Immune Signatures at Single Cell Level in Alzheimer's Disease. BIBM 2023: 3756-3763- 2022
- [c42]Honglin Wang
, Pujan Joshi, Chenyu Zhang, Peter F. Maye, David W. Rowe, Dong-Guk Shin:
rCom: a route-based framework inferring cell type communication and regulatory network using single cell data. BCB 2022: 27:1-27:4 - [c41]Chenyu Zhang, Pujan Joshi, Honglin Wang, Seung-Hyun Hong, Riqiang Yan, Dong-Guk Shin:
Pola Viz Reveals Microglia Polarization at Single Cell Level in Alzheimer's Disease. BIBM 2022: 1387-1392 - [c40]Timothy James Becker, Dashzeveg Bayarsaihan, Dong-Guk Shin:
A framework for associating structural variants with cell-specific transcription factors and histone modifications in defect phenotypes. BIBM 2022: 3616-3621 - 2021
- [j19]Timothy James Becker, Dong-Guk Shin:
Structural variation calling and genotyping by moment-based deep convolutional neural networks. Int. J. Data Min. Bioinform. 25(1/2): 37-52 (2021) - [j18]Yue Zhao, Dong-Guk Shin:
Deep Pathway Analysis V2.0: A Pathway Analysis Framework Incorporating Multi-Dimensional Omics Data. IEEE ACM Trans. Comput. Biol. Bioinform. 18(1): 373-385 (2021) - [c39]Pujan Joshi, Honglin Wang, Salvatore Jaramillo, Seung-Hyun Hong, Charles Giardina, Dong-Guk Shin:
Identification of Crosstalk between Biological Pathway Routes in Cancer Cohorts. BIBM 2021: 245-248 - [c38]Honglin Wang, Pujan Joshi, Seung-Hyun Hong, Dong-Ju Shin, Dong-Guk Shin:
ctBuilder: A framework for building pathway crosstalks by combining single cell data with bulk cell data. BIBM 2021: 270-273 - 2020
- [j17]Timothy James Becker, Dong-Guk Shin:
Efficient methods for hierarchical multi-omic feature extraction and visualisation. Int. J. Data Min. Bioinform. 23(4): 285-298 (2020) - [c37]Pujan Joshi, Brent Basso, Honglin Wang, Seung-Hyun Hong, Charles Giardina, Dong-Guk Shin:
Identification of Key Biological Pathway Routes in Cancer Cohorts. BIBM 2020: 154-157 - [c36]Honglin Wang, Pujan Joshi, Seung-Hyun Hong, Peter F. Maye, David W. Rowe, Dong-Guk Shin:
cTAP: A Machine Learning Framework for Predicting Target Genes of a Transcription Factor using a Cohort of Gene Expression Data Sets. BIBM 2020: 164-167 - [c35]Timothy James Becker, Dong-Guk Shin:
TensorSV: structural variation inference using tensors and variable topology neural networks. BIBM 2020: 1356-1360 - [c34]Pujan Joshi, Honglin Wang, Brent Basso, Seung-Hyun Hong, Charles Giardina, Dong-Guk Shin:
A Framework for Route Based Pathway Analysis of Gene Expression Data. ICCBB 2020: 20-26
2010 – 2019
- 2019
- [j16]Asa Thibodeau, Dong-Guk Shin:
TriPOINT: a software tool to prioritize important genes in pathways and their non-coding regulators. Bioinform. 35(15): 2686-2689 (2019) - [c33]Yue Zhao, Pujan Joshi, Dong-Guk Shin:
Recurrent Neural Network for Gene Regulation Network Construction on Time Series Expression Data. BIBM 2019: 610-615 - [c32]Timothy James Becker, Dong-Guk Shin:
HFM: Hierarchical Feature Moment Extraction for Multi-Omic Data Visualization. BIBM 2019: 1970-1976 - 2016
- [j15]Asa Thibodeau, Eladio J. Márquez, Oscar Luo, Yijun Ruan, Francesca Menghi, Dong-Guk Shin, Michael L. Stitzel, Paola Vera-Licona, Duygu Ucar:
QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks. PLoS Comput. Biol. 12(6) (2016) - [c31]Yue Zhao, Tham H. Hoang, Pujan Joshi, Seung-Hyun Hong, Dong-Guk Shin:
Deep pathway analysis incorporating mutation information and gene expression data. BIBM 2016: 260-265 - 2013
- [j14]Joseph Leone, Dong-Guk Shin:
A Phrase-based Ontology Enabled Semantic Processing System for Web Search. Trans. Mach. Learn. Data Min. 6(2): 45-80 (2013) - [c30]Pujan Joshi, Baikang Pei, Seung-Hyun Hong, Ivo Kalajzic, Dong-Ju Shin, David W. Rowe, Dong-Guk Shin:
A software framework integrating gene expression patterns, binding site analysis and gene ontology to hypothesize gene regulation relationships. BIBM 2013: 210-213 - 2012
- [j13]Baikang Pei, Dong-Guk Shin:
Reconstruction of Biological Networks by Incorporating Prior Knowledge into Bayesian Network Models. J. Comput. Biol. 19(12): 1324-1334 (2012) - 2011
- [c29]Joseph Leone, Dong-Guk Shin:
A Semantic Processing System (SPS) for Biomedical Literature Web Search. ICDM (Poster and Industry Proceedings) 2011: 38-47 - 2010
- [j12]Saira Ali Kazmi, Yoo-Ah Kim, Dong-Guk Shin:
Meta analysis algorithms for microarray gene expression data using Gene Regulatory Networks. Int. J. Data Min. Bioinform. 4(5): 487-504 (2010) - [j11]Baikang Pei, David W. Rowe, Dong-Guk Shin:
Learning Bayesian networks with integration of indirect prior knowledge. Int. J. Data Min. Bioinform. 4(5): 505-519 (2010) - [c28]Baikang Pei, Dong-Guk Shin:
Reconstruction of Biological Networks Structure by Using Bayesian Network Models with a Two-step Learning Procedure. BIOCOMP 2010: 743-749
2000 – 2009
- 2009
- [j10]Lung-Yung Chu, Dong-Guk Shin:
An Improved Heuristic Approach for the Steiner Problem in Graphs. Int. J. Comput. Their Appl. 16(3): 154-170 (2009) - [j9]Dong-Guk Shin, Saira Ali Kazmi, Baikang Pei, Yoo-Ah Kim, Jeffrey Maddox, Ravi Nori, Alan Wong, Winfried Krueger, David W. Rowe:
Computing Consistency Between Microarray Data and Known Gene Regulation Relationships. IEEE Trans. Inf. Technol. Biomed. 13(6): 1075-1082 (2009) - [c27]Dong-Guk Shin, Seung-Hyun Hong, Pujan Joshi, Ravi Nori, Baikang Pei, Hsin-Wei Wang, Patrick Harrington, Lynn Kuo, Ivo Kalajzic, David W. Rowe:
PBC: A Software Framework Facilitating Pattern-Based Clustering for Microarray Data Analysis. IJCBS 2009: 30-36 - 2008
- [c26]Saira Ali Kazmi, Yoo-Ah Kim, Baikang Pei, Ravi Nori, David W. Rowe, Hsin-Wei Wang, Alan Wong, Dong-Guk Shin:
Meta Analysis of Microarray Data Using Gene Regulation Pathways. BIBM 2008: 37-42 - [c25]Baikang Pei, David W. Rowe, Dong-Guk Shin:
Reverse Engineering of Gene Regulatory Network by Integration of Prior Global Gene Regulatory Information. BIBM 2008: 129-134 - 2006
- [c24]Dong-Guk Shin, John Bluis, Yoo Ah Kim, Winfried Krueger, Jeffrey Maddox, Ravi Nori, Nathan Viniconis, Hsin-Wei Wang, Alan Wong, David W. Rowe:
A Computational Inference Framework for analyzing Gene Regulation Pathway using Microarray Data. BIBE 2006: 299-306 - 2003
- [c23]John Bluis, Dong-Guk Shin:
Nodal Distance Algorithm: Calculating a Phylogenetic Tree Comparison Metri. BIBE 2003: 87-94 - 2002
- [c22]Taysir Hassan A. Soliman, Dong-Guk Shin:
A Comparative Study for Mining Biological Data. IS 2002: 202-210 - 2001
- [c21]John Bluis, Ravi Nori, Hsin-Wei Wang, Pinglei Zhou, J. Peter Gogarten, Dong-Guk Shin:
Comparing Trees in a Phylogenetic Relationship Repository. BIBE 2001: 166-173 - 2000
- [c20]Dong-Guk Shin, Ravi Shankar Nori:
CBM: A Visual Query Interface Model based on Annotated Cartoon Diagrams. Advanced Visual Interfaces 2000: 242-245 - [c19]Kei-Hoi Cheung, Dong-Guk Shin:
A Graph-based Meta-data Framework for Interoperation between Genome Databases. BIBE 2000: 109-117
1990 – 1999
- 1999
- [j8]Changhwan Lee, Dong-Guk Shin:
A Multistrategy Approach to Classification Learning in Databases. Data Knowl. Eng. 31(1): 67-93 (1999) - [j7]Changhwan Lee, Dong-Guk Shin:
Using Hellinger distance in a nearest neighbour classifier for relational databases. Knowl. Based Syst. 12(7): 363-370 (1999) - [c18]Wally Grajewski, Dong-Guk Shin, Lei Liu:
Xyntagma: a Graphical Query Interface for the ACeDB Genome Databases. CBMS 1999: 234- - [c17]Fei Shi, Dong-Guk Shin:
Centroid Trees with Application to String Processing. Stringology 1999: 61-72 - 1998
- [j6]Kei-Hoi Cheung, Prakash M. Nadkarni, Dong-Guk Shin:
A metadata approach to query interoperation between molecular biology databases. Bioinform. 14(6): 486-497 (1998) - [j5]Jeong Seok Lim, Dong-Guk Shin:
A Methodology of Constructing Canonical Form Database Schemas in a Multiple Heterogeneous Database Environment. J. Database Manag. 9(4): 4-11 (1998) - [c16]Dong-Guk Shin, Lung-Yung Chu:
Establishing Logical Connectivity between Query Keywords and Database Contents. Canadian AI 1998: 45-59 - [c15]Kei-Hoi Cheung, Prakash M. Nadkarni, Perry L. Miller, Dong-Guk Shin:
Automatic query mapping among genomic databases: a pilot exploration. AMIA 1998 - [c14]Dong-Guk Shin, Wally Grajewski, Lung-Yung Chu:
An epistemological display query interface. AVI 1998: 286-288 - [c13]Lung-Yung Chu, Dong-Guk Shin:
An effective heuristic algorithm for finding a steiner tree in graphs. CATA 1998: 121-124 - [c12]Richard T. Landers, Dong-Guk Shin:
A lightweight computational model for achieving location transparency in distributed environments. CATA 1998: 156-159 - [c11]Kei-Hoi Cheung, Dong-Guk Shin:
A simple model capable of expressing meta-data for database interoperability. CATA 1998: 182-185 - [c10]Jeong Seok Lim, Dong-Guk Shin:
A Methodology of Constructing Canonical Form Database Schemas in a Multiple Heterogenous Database Environment. IADT 1998: 168-175 - [c9]Kei-Hoi Cheung, Dong-Guk Shin:
A Framework Designed to Represent Both Data and Meta-Data to Enhance Database Interoperability. IADT 1998: 184-191 - [c8]Dong-Guk Shin, Lei Liu, Leslie M. Loew, James C. Schaff:
Virtual Cell: A General Framework for Simulating and Visualizing Cellular Physiology. VDB 1998: 214-220 - 1995
- [c7]Dong-Guk Shin:
Comparative study of relational and object-oriented modelings of genomic data. HICSS (5) 1995: 81-90 - 1994
- [j4]Dong-Guk Shin:
An Expection-Driven Response Understanding Paradigm. IEEE Trans. Knowl. Data Eng. 6(3): 430-443 (1994) - [c6]Changhwan Lee, Dong-Guk Shin:
A Context-Sensitive Discretization of Numeric Attributes for Classification Learning. ECAI 1994: 428-432 - [c5]Dong-Guk Shin, François Rechenmann:
Data and Knowledge Base Issues in Genomics: Introduction. HICSS (5) 1994: 3-4 - [c4]Dong-Guk Shin, Rohit Gupta, T. C. Ting:
Achieving Interoperability between Heterogeneous Object-Oriented Genomic Databases. HICSS (5) 1994: 77-86 - [c3]Changhwan Lee, Dong-Guk Shin:
EEL: An Instance-Based Learning Method for Databases. IEA/AIE 1994: 181-188 - 1992
- [j3]Dong-Guk Shin, Changhwan Lee, Jinghui Zhang, Kenneth E. Rudd, Claire M. Berg:
Redesigning, implementing and integrating Escherichia coli genome software tools with an object-oriented database system. Comput. Appl. Biosci. 8(3): 227-238 (1992) - 1991
- [j2]Dong-Guk Shin, Keki B. Irani:
Fragmenting Relations Horizontally Using a Knowledge-Based Approach. IEEE Trans. Software Eng. 17(9): 872-883 (1991) - 1990
- [j1]Dong-Guk Shin, Joseph Leone:
Am/AG Model: a Hierarchical Social System Metaphor for Distributed Problem Solving. Int. J. Pattern Recognit. Artif. Intell. 4(3): 473-488 (1990) - [c2]Dong-Guk Shin, S. K. Wallfesh:
An Expectation-Driven Approach to Q-A Processing. ICSI 1990: 520-527
1980 – 1989
- 1988
- [c1]Dong-Guk Shin, Fred J. Maryanski:
Knowledge-aided engineering environment for design and manufacturing. COMPSAC 1988: 395-401 - 1985
- [b1]Dong-Guk Shin:
An Extension of a First-Order Language and Its Applications (Many-Sorted Logic, Distributed Database Design, Resolution, Automatic Theorem Proving, Horizontal Partitioning). University of Michigan, USA, 1985
Coauthor Index
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