BibTeX records: Olivier Gandrillon

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@article{DBLP:journals/bmcbi/BouvierZVFGBG24,
  author       = {Matteo Bouvier and
                  Souad Zreika and
                  Elodie Vallin and
                  Camille Fourneaux and
                  Sandrine Gonin{-}Giraud and
                  Arnaud Bonnaffoux and
                  Olivier Gandrillon},
  title        = {TopoDoE: a design of experiment strategy for selection and refinement
                  in ensembles of executable gene regulatory networks},
  journal      = {{BMC} Bioinform.},
  volume       = {25},
  number       = {1},
  pages        = {245},
  year         = {2024},
  url          = {https://doi.org/10.1186/s12859-024-05855-x},
  doi          = {10.1186/S12859-024-05855-X},
  timestamp    = {Mon, 29 Jul 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/BouvierZVFGBG24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EstavoyerDRLVMGL24,
  author       = {Maxime Estavoyer and
                  Marion Dufeu and
                  Gr{\'{e}}goire Ranson and
                  Sylvain Lefort and
                  Thibault Voeltzel and
                  V{\'{e}}ronique Maguer{-}Satta and
                  Olivier Gandrillon and
                  Thomas Lepoutre},
  title        = {Modeling relaxation experiments with a mechanistic model of gene expression},
  journal      = {{BMC} Bioinform.},
  volume       = {25},
  number       = {1},
  pages        = {270},
  year         = {2024},
  url          = {https://doi.org/10.1186/s12859-024-05816-4},
  doi          = {10.1186/S12859-024-05816-4},
  timestamp    = {Mon, 03 Mar 2025 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/EstavoyerDRLVMGL24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/LepetitICRBAPG23,
  author       = {Maxime Lepetit and
                  Mirela Diana Ilie and
                  Marie Chanal and
                  Gerald Raverot and
                  Philippe Bertolino and
                  Christophe Arpin and
                  Franck Picard and
                  Olivier Gandrillon},
  title        = {scAN1.0: {A} reproducible and standardized pipeline for processing
                  10X single cell RNAseq data},
  journal      = {Silico Biol.},
  volume       = {15},
  number       = {1-2},
  pages        = {11--21},
  year         = {2023},
  url          = {https://doi.org/10.3233/ISB-220252},
  doi          = {10.3233/ISB-220252},
  timestamp    = {Thu, 01 May 2025 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/isb/LepetitICRBAPG23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/VentreHEBG23,
  author       = {Elias Ventre and
                  Ulysse Herbach and
                  Thibault Espinasse and
                  G{\'{e}}rard Benoit and
                  Olivier Gandrillon},
  title        = {One model fits all: Combining inference and simulation of gene regulatory
                  networks},
  journal      = {PLoS Comput. Biol.},
  volume       = {19},
  number       = {3},
  year         = {2023},
  url          = {https://doi.org/10.1371/journal.pcbi.1010962},
  doi          = {10.1371/JOURNAL.PCBI.1010962},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/VentreHEBG23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2307-08509,
  author       = {Anthony Ozier{-}Lafontaine and
                  Camille Fourneaux and
                  Ghislain Durif and
                  C{\'{e}}line Vallot and
                  Olivier Gandrillon and
                  Sandrine Giraud and
                  Bertrand Michel and
                  Franck Picard},
  title        = {Kernel-Based Testing for Single-Cell Differential Analysis},
  journal      = {CoRR},
  volume       = {abs/2307.08509},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2307.08509},
  doi          = {10.48550/ARXIV.2307.08509},
  eprinttype    = {arXiv},
  eprint       = {2307.08509},
  timestamp    = {Thu, 27 Jul 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2307-08509.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DuchesneGGC21,
  author       = {Ronan Duchesne and
                  Anissa Guillemin and
                  Olivier Gandrillon and
                  Fabien Crauste},
  title        = {Practical identifiability in the frame of nonlinear mixed effects
                  models: the example of the in vitro erythropoiesis},
  journal      = {{BMC} Bioinform.},
  volume       = {22},
  number       = {1},
  pages        = {478},
  year         = {2021},
  url          = {https://doi.org/10.1186/s12859-021-04373-4},
  doi          = {10.1186/S12859-021-04373-4},
  timestamp    = {Mon, 03 Mar 2025 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/DuchesneGGC21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/AudebertLAGMC21,
  author       = {Chloe Audebert and
                  Daphn{\'{e}} Laubreton and
                  Christophe Arpin and
                  Olivier Gandrillon and
                  Jacqueline Marvel and
                  Fabien Crauste},
  title        = {Modeling and characterization of inter-individual variability in {CD8}
                  {T} cell responses in mice},
  journal      = {Silico Biol.},
  volume       = {14},
  number       = {1-2},
  pages        = {13--39},
  year         = {2021},
  url          = {https://doi.org/10.3233/ISB-200205},
  doi          = {10.3233/ISB-200205},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/isb/AudebertLAGMC21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BonnaffouxHRGGG19,
  author       = {Arnaud Bonnaffoux and
                  Ulysse Herbach and
                  Ang{\'{e}}lique Richard and
                  Anissa Guillemin and
                  Sandrine Gonin{-}Giraud and
                  Pierre{-}Alexis Gros and
                  Olivier Gandrillon},
  title        = {{WASABI:} a dynamic iterative framework for gene regulatory network
                  inference},
  journal      = {{BMC} Bioinform.},
  volume       = {20},
  number       = {1},
  pages        = {220:1--220:19},
  year         = {2019},
  url          = {https://doi.org/10.1186/s12859-019-2798-1},
  doi          = {10.1186/S12859-019-2798-1},
  timestamp    = {Mon, 03 Mar 2025 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/BonnaffouxHRGGG19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/DuchesneGCG19,
  author       = {Ronan Duchesne and
                  Anissa Guillemin and
                  Fabien Crauste and
                  Olivier Gandrillon},
  title        = {Calibration, Selection and Identifiability Analysis of a Mathematical
                  Model of the \emph{in vitro} Erythropoiesis in Normal and Perturbed
                  Contexts},
  journal      = {Silico Biol.},
  volume       = {13},
  number       = {1-2},
  pages        = {55--69},
  year         = {2019},
  url          = {https://doi.org/10.3233/ISB-190471},
  doi          = {10.3233/ISB-190471},
  timestamp    = {Sat, 05 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/isb/DuchesneGCG19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GaoUGG18,
  author       = {Nan Papili Gao and
                  S. M. Minhaz Ud{-}Dean and
                  Olivier Gandrillon and
                  Rudiyanto Gunawan},
  title        = {{SINCERITIES:} inferring gene regulatory networks from time-stamped
                  single cell transcriptional expression profiles},
  journal      = {Bioinform.},
  volume       = {34},
  number       = {2},
  pages        = {258--266},
  year         = {2018},
  url          = {https://doi.org/10.1093/bioinformatics/btx575},
  doi          = {10.1093/BIOINFORMATICS/BTX575},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GaoUGG18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/closer/BonnaffouxCCG18,
  author       = {Arnaud Bonnaffoux and
                  Eddy Caron and
                  Hadrien Croubois and
                  Olivier Gandrillon},
  editor       = {V{\'{\i}}ctor M{\'{e}}ndez Mu{\~{n}}oz and
                  Donald Ferguson and
                  Markus Helfert and
                  Claus Pahl},
  title        = {A Cloud-aware Autonomous Workflow Engine and Its Application to Gene
                  Regulatory Networks Inference},
  booktitle    = {Proceedings of the 8th International Conference on Cloud Computing
                  and Services Science, {CLOSER} 2018, Funchal, Madeira, Portugal, March
                  19-21, 2018},
  pages        = {509--516},
  publisher    = {SciTePress},
  year         = {2018},
  url          = {https://doi.org/10.5220/0006772805090516},
  doi          = {10.5220/0006772805090516},
  timestamp    = {Mon, 30 Apr 2018 14:55:48 +0200},
  biburl       = {https://dblp.org/rec/conf/closer/BonnaffouxCCG18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/GaoAMPGC16,
  author       = {Xuefeng Gao and
                  Christophe Arpin and
                  Jacqueline Marvel and
                  Sotiris A. Prokopiou and
                  Olivier Gandrillon and
                  Fabien Crauste},
  title        = {{IL-2} sensitivity and exogenous {IL-2} concentration gradient tune
                  the productive contact duration of CD8\({}^{\mbox{+}}\) {T} cell-APC:
                  a multiscale modeling study},
  journal      = {{BMC} Syst. Biol.},
  volume       = {10},
  pages        = {77},
  year         = {2016},
  url          = {https://doi.org/10.1186/s12918-016-0323-y},
  doi          = {10.1186/S12918-016-0323-Y},
  timestamp    = {Sun, 06 Oct 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/GaoAMPGC16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/CellierCPRCGKM15,
  author       = {Peggy Cellier and
                  Thierry Charnois and
                  Marc Plantevit and
                  Christophe Rigotti and
                  Bruno Cr{\'{e}}milleux and
                  Olivier Gandrillon and
                  Jir{\'{\i}} Kl{\'{e}}ma and
                  Jean{-}Luc Manguin},
  title        = {Sequential pattern mining for discovering gene interactions and their
                  contextual information from biomedical texts},
  journal      = {J. Biomed. Semant.},
  volume       = {6},
  pages        = {27},
  year         = {2015},
  url          = {https://doi.org/10.1186/s13326-015-0023-3},
  doi          = {10.1186/S13326-015-0023-3},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biomedsem/CellierCPRCGKM15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/computation/ProkopiouBBMLAMGC14,
  author       = {Sotiris A. Prokopiou and
                  Lo{\"{\i}}c Barbarroux and
                  Samuel Bernard and
                  Julien Mafille and
                  Yann Leverrier and
                  Christophe Arpin and
                  Jacqueline Marvel and
                  Olivier Gandrillon and
                  Fabien Crauste},
  title        = {Multiscale Modeling of the Early {CD8} T-Cell Immune Response in Lymph
                  Nodes: An Integrative Study},
  journal      = {Comput.},
  volume       = {2},
  number       = {4},
  pages        = {159--181},
  year         = {2014},
  url          = {https://doi.org/10.3390/computation2040159},
  doi          = {10.3390/COMPUTATION2040159},
  timestamp    = {Sun, 06 Oct 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/computation/ProkopiouBBMLAMGC14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/kais/MougelRPG14,
  author       = {Pierre{-}Nicolas Mougel and
                  Christophe Rigotti and
                  Marc Plantevit and
                  Olivier Gandrillon},
  title        = {Finding maximal homogeneous clique sets},
  journal      = {Knowl. Inf. Syst.},
  volume       = {39},
  number       = {3},
  pages        = {579--608},
  year         = {2014},
  url          = {https://doi.org/10.1007/s10115-013-0625-y},
  doi          = {10.1007/S10115-013-0625-Y},
  timestamp    = {Thu, 15 Jun 2017 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/kais/MougelRPG14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pakdd/MougelRG12,
  author       = {Pierre{-}Nicolas Mougel and
                  Christophe Rigotti and
                  Olivier Gandrillon},
  editor       = {Pang{-}Ning Tan and
                  Sanjay Chawla and
                  Chin Kuan Ho and
                  James Bailey},
  title        = {Finding Collections of k-Clique Percolated Components in Attributed
                  Graphs},
  booktitle    = {Advances in Knowledge Discovery and Data Mining - 16th Pacific-Asia
                  Conference, {PAKDD} 2012, Kuala Lumpur, Malaysia, May 29 - June 1,
                  2012, Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {7302},
  pages        = {181--192},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-3-642-30220-6\_16},
  doi          = {10.1007/978-3-642-30220-6\_16},
  timestamp    = {Tue, 14 May 2019 10:00:51 +0200},
  biburl       = {https://dblp.org/rec/conf/pakdd/MougelRG12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/f-egc/MougelPRGB11,
  author       = {Pierre{-}Nicolas Mougel and
                  Marc Plantevit and
                  Christophe Rigotti and
                  Olivier Gandrillon and
                  Jean{-}Fran{\c{c}}ois Boulicaut},
  editor       = {Ali Khenchaf and
                  Pascal Poncelet},
  title        = {Extraction sous contraintes d'ensembles de cliques homog{\`{e}}nes},
  booktitle    = {Extraction et gestion des connaissances (EGC'2011), Actes, 25 au 29
                  janvier 2011, Brest, France},
  series       = {Revue des Nouvelles Technologies de l'Information},
  volume       = {{RNTI-E-20}},
  pages        = {443--454},
  publisher    = {Hermann-{\'{E}}ditions},
  year         = {2011},
  url          = {https://editions-rnti.fr/?inprocid=1000999},
  timestamp    = {Wed, 06 Nov 2024 17:10:35 +0100},
  biburl       = {https://dblp.org/rec/conf/f-egc/MougelPRGB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/CoulonGB10,
  author       = {Antoine Coulon and
                  Olivier Gandrillon and
                  Guillaume Beslon},
  title        = {On the spontaneous stochastic dynamics of a single gene: complexity
                  of the molecular interplay at the promoter},
  journal      = {{BMC} Syst. Biol.},
  volume       = {4},
  pages        = {2},
  year         = {2010},
  url          = {https://doi.org/10.1186/1752-0509-4-2},
  doi          = {10.1186/1752-0509-4-2},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/CoulonGB10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/daglib/p/RigottiMBMBG10,
  author       = {Christophe Rigotti and
                  Ieva Mitasiunaite and
                  J{\'{e}}r{\'{e}}my Besson and
                  Laur{\`{e}}ne Meyniel and
                  Jean{-}Fran{\c{c}}ois Boulicaut and
                  Olivier Gandrillon},
  editor       = {Saso Dzeroski and
                  Bart Goethals and
                  Pance Panov},
  title        = {Using a Solver Over the String Pattern Domain to Analyze Gene Promoter
                  Sequences},
  booktitle    = {Inductive Databases and Constraint-Based Data Mining},
  pages        = {407--423},
  publisher    = {Springer},
  year         = {2010},
  url          = {https://doi.org/10.1007/978-1-4419-7738-0\_17},
  doi          = {10.1007/978-1-4419-7738-0\_17},
  timestamp    = {Sat, 09 Apr 2022 12:20:03 +0200},
  biburl       = {https://dblp.org/rec/books/daglib/p/RigottiMBMBG10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/MitasiunaiteRSMBG09,
  author       = {Ieva Mitasiunaite and
                  Christophe Rigotti and
                  St{\'{e}}phane Schicklin and
                  Laur{\`{e}}ne Meyniel and
                  Jean{-}Fran{\c{c}}ois Boulicaut and
                  Olivier Gandrillon},
  title        = {Extracting Signature Motifs from Promoter Sets of Differentially Expressed
                  Genes},
  journal      = {Silico Biol.},
  volume       = {9},
  number       = {1-2},
  pages        = {S17--S39},
  year         = {2009},
  url          = {https://doi.org/10.3233/ISB-2009-0381},
  doi          = {10.3233/ISB-2009-0381},
  timestamp    = {Thu, 20 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/isb/MitasiunaiteRSMBG09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ictai/BoyerGHPS09,
  author       = {Laurent Boyer and
                  Olivier Gandrillon and
                  Amaury Habrard and
                  Mathilde Pellerin and
                  Marc Sebban},
  title        = {Learning Constrained Edit State Machines},
  booktitle    = {{ICTAI} 2009, 21st {IEEE} International Conference on Tools with Artificial
                  Intelligence, Newark, New Jersey, USA, 2-4 November 2009},
  pages        = {734--741},
  publisher    = {{IEEE} Computer Society},
  year         = {2009},
  url          = {https://doi.org/10.1109/ICTAI.2009.27},
  doi          = {10.1109/ICTAI.2009.27},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ictai/BoyerGHPS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LeyritzSBKRBBPG08,
  author       = {Johan Leyritz and
                  St{\'{e}}phane Schicklin and
                  Sylvain Blachon and
                  C{\'{e}}line Keime and
                  C{\'{e}}line Robardet and
                  Jean{-}Fran{\c{c}}ois Boulicaut and
                  J{\'{e}}r{\'{e}}my Besson and
                  Ruggero G. Pensa and
                  Olivier Gandrillon},
  title        = {{SQUAT:} {A} web tool to mine human, murine and avian {SAGE} data},
  journal      = {{BMC} Bioinform.},
  volume       = {9},
  year         = {2008},
  url          = {https://doi.org/10.1186/1471-2105-9-378},
  doi          = {10.1186/1471-2105-9-378},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/LeyritzSBKRBBPG08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/KlemaBSCG08,
  author       = {Jir{\'{\i}} Kl{\'{e}}ma and
                  Sylvain Blachon and
                  Arnaud Soulet and
                  Bruno Cr{\'{e}}milleux and
                  Olivier Gandrillon},
  title        = {Constraint-Based Knowledge Discovery from {SAGE} Data},
  journal      = {Silico Biol.},
  volume       = {8},
  number       = {2},
  pages        = {157--175},
  year         = {2008},
  url          = {http://content.iospress.com/articles/in-silico-biology/isb00351},
  timestamp    = {Thu, 20 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/isb/KlemaBSCG08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KeimeSMDG07,
  author       = {C{\'{e}}line Keime and
                  Marie S{\'{e}}mon and
                  Dominique Mouchiroud and
                  Laurent Duret and
                  Olivier Gandrillon},
  title        = {Unexpected observations after mapping LongSAGE tags to the human genome},
  journal      = {{BMC} Bioinform.},
  volume       = {8},
  year         = {2007},
  url          = {https://doi.org/10.1186/1471-2105-8-154},
  doi          = {10.1186/1471-2105-8-154},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/KeimeSMDG07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/BlachonPBRBG07,
  author       = {Sylvain Blachon and
                  Ruggero G. Pensa and
                  J{\'{e}}r{\'{e}}my Besson and
                  C{\'{e}}line Robardet and
                  Jean{-}Fran{\c{c}}ois Boulicaut and
                  Olivier Gandrillon},
  title        = {Clustering Formal Concepts to Discover Biologically Relevant Knowledge
                  from Gene Expression Data},
  journal      = {Silico Biol.},
  volume       = {7},
  number       = {4-5},
  pages        = {467--483},
  year         = {2007},
  url          = {http://content.iospress.com/articles/in-silico-biology/isb00321},
  timestamp    = {Thu, 20 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/isb/BlachonPBRBG07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tsi/CoulonSMGB07,
  author       = {Antoine Coulon and
                  H{\'{e}}di Soula and
                  Olivier Mazet and
                  Olivier Gandrillon and
                  Guillaume Beslon},
  title        = {Mod{\'{e}}lisation cellulaire pour l'{\'{e}}mergence de
                  structures multiprot{\'{e}}iques auto-organis{\'{e}}es},
  journal      = {Tech. Sci. Informatiques},
  volume       = {26},
  number       = {1-2},
  pages        = {123--148},
  year         = {2007},
  url          = {https://doi.org/10.3166/tsi.26.123-148},
  doi          = {10.3166/TSI.26.123-148},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tsi/CoulonSMGB07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cbms/KlemaSCBG06,
  author       = {Jir{\'{\i}} Kl{\'{e}}ma and
                  Arnaud Soulet and
                  Bruno Cr{\'{e}}milleux and
                  Sylvain Blachon and
                  Olivier Gandrillon},
  title        = {Mining Plausible Patterns from Genomic Data},
  booktitle    = {19th {IEEE} International Symposium on Computer-Based Medical Systems
                  {(CBMS} 2006), 22-23 June 2006, Salt Lake City, Utah, {USA}},
  pages        = {183--190},
  publisher    = {{IEEE} Computer Society},
  year         = {2006},
  url          = {https://doi.org/10.1109/CBMS.2006.116},
  doi          = {10.1109/CBMS.2006.116},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/cbms/KlemaSCBG06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SoulaRPGBG05,
  author       = {H{\'{e}}di Soula and
                  C{\'{e}}line Robardet and
                  Fran{\c{c}}ois Perrin and
                  S{\'{e}}bastien Gripon and
                  Guillaume Beslon and
                  Olivier Gandrillon},
  title        = {Modeling the emergence of multi-protein dynamic structures by principles
                  of self-organization through the use of 3DSpi, a multi-agent-based
                  software},
  journal      = {{BMC} Bioinform.},
  volume       = {6},
  pages        = {228},
  year         = {2005},
  url          = {https://doi.org/10.1186/1471-2105-6-228},
  doi          = {10.1186/1471-2105-6-228},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/SoulaRPGBG05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KeimeDMDG04,
  author       = {C{\'{e}}line Keime and
                  Francesca Damiola and
                  Dominique Mouchiroud and
                  Laurent Duret and
                  Olivier Gandrillon},
  title        = {Identitag, a relational database for {SAGE} tag identification and
                  interspecies comparison of {SAGE} libraries},
  journal      = {{BMC} Bioinform.},
  volume       = {5},
  pages        = {143},
  year         = {2004},
  url          = {https://doi.org/10.1186/1471-2105-5-143},
  doi          = {10.1186/1471-2105-5-143},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/KeimeDMDG04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kdid/RioultRBCGB03,
  author       = {Fran{\c{c}}ois Rioult and
                  C{\'{e}}line Robardet and
                  Sylvain Blachon and
                  Bruno Cr{\'{e}}milleux and
                  Olivier Gandrillon and
                  Jean{-}Fran{\c{c}}ois Boulicaut},
  editor       = {Jean{-}Fran{\c{c}}ois Boulicaut and
                  Saso Dzeroski},
  title        = {Mining Concepts from Large {SAGE} Gene Expression Matrices},
  booktitle    = {Proceedings of the Second International Workshop on Inductive Databases,
                  22 September, Cavtat-Dubrovnik, Croatia},
  pages        = {107--118},
  publisher    = {Rudjer Boskovic Institute, Zagreb, Croatia},
  year         = {2003},
  timestamp    = {Wed, 03 Jul 2024 12:29:59 +0200},
  biburl       = {https://dblp.org/rec/conf/kdid/RioultRBCGB03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}