easyDAS: Automatic creation of DAS servers. - Gel, Bernat; Jenkinson, Andrew M.; Jiménez, Rafael C.; Peypoch, Xavier Messeguer; Hermjakob, Henning (BMC Bioinform., 2011)

A Novel Heuristic for Local Multiple Alignment of Interspersed DNA Repeats. - Treangen, Todd J.; Darling, Aaron E.; Achaz, Guillaume; Ragan, Mark A.; Messeguer, Xavier; Rocha, Eduardo P. C. (IEEE ACM Trans. Comput. Biol. Bioinform., 2009)

Gapped Extension for Local Multiple Alignment of Interspersed DNA Repeats. - Treangen, Todd J.; Darling, Aaron E.; Ragan, Mark A.; Messeguer, Xavier (2008)

Novel Computational Methods for Large Scale Genome Comparison. - Treangen, Todd J.; Messeguer, Xavier (2008)

Implementing an Interactive Web-Based DAS Client. - Gel, Bernat; Messeguer, Xavier (2008)

Multiple non-collinear TF-map alignments of promoter regions. - Blanco, Enrique; Guigó, Roderic; Messeguer, Xavier (BMC Bioinform., 2007)

M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species. - Treangen, Todd J.; Messeguer, Xavier (BMC Bioinform., 2006)

ABS: a database of Annotated regulatory Binding Sites from orthologous promoters. - Blanco, Enrique; Farré, Domènec; Albà, M. Mar; Messeguer, Xavier; Guigó, Roderic (Nucleic Acids Res., 2006)

Transcription Factor Map Alignment of Promoter Regions. - Blanco, Enrique; Messeguer, Xavier; Smith, Temple F.; Guigó, Roderic (PLoS Comput. Biol., 2006)

Procrastination Leads to Efficient Filtration for Local Multiple Alignment. - Darling, Aaron E.; Treangen, Todd J.; Zhang, Louxin; Kuiken, Carla; Messeguer, Xavier; Perna, Nicole T. (2006)

M-GCAT: Multiple Genome Comparison and Alignment Tool. - Treangen, Todd J.; Messeguer, Xavier (2004)

Prediction of Transcription Factor Binding Sites with PROMO v.3: Improving the Specificity of Weight Matrices and the Searching Process. - Farré, Domènec; García, David; Albà, M. Mar; Messeguer, Xavier (2004)

Multiple Sequence Alignment for Characterizing the Lineal Structure of Revision. - Alemany, Laura Alonso; Castellón, Irene; Escribano, Jordi; Messeguer, Xavier; Padró, Lluís (2004)

Proceedings of the 5th Annual Spanish Bioinformatics Conference, Barcelona, Catalonia, Spain, November 29-30, 2004 (Technical University of Catalonia, Barcelona, 2004)

MREPATT: detection and analysis of exact consecutive repeats in genomic sequences. - Roset, Roman; Subirana, Juan A.; Messeguer, Xavier (Bioinform., 2003)

DnaSP, DNA polymorphism analyses by the coalescent and other methods. - Rozas, Julio; Sánchez-DelBarrio, Juan C.; Messeguer, Xavier; Rozas, Ricardo (Bioinform., 2003)

Identification of patterns in biological sequences at the ALGGEN server: PROMO and MALGEN. - Farré, Domènec; Roset, Roman; Huerta, Mario; Adsuara, José-Enrique; Roselló, Llorenç; Albà, M. Mar; Messeguer, Xavier (Nucleic Acids Res., 2003)

Fringe analysis of synchronized parallel insertion algorithms in 2-3 Trees. - Baeza-Yates, Ricardo A.; Gabarró, Joaquim; Messeguer, Xavier (Theor. Comput. Sci., 2003)

PROMO: detection of known transcription regulatory elements using species-tailored searches. - Messeguer, Xavier; Escudero, Ruth; Farré, Domènec; Núñez, Oscar; Martínez, Javier; Albà, M. Mar (Bioinform., 2002)

Parallel Dictionaries with Local Rules on AVL and Brother Trees. - Gabarró, Joaquim; Messeguer, Xavier (Inf. Process. Lett., 1998)

Relaxed Tree Structures, a Way to Deal with Concurrency and Parallelism on Dictionaries. - Gabarró, Joaquim; Messeguer, Xavier (1998)

Fringe Analysis of Synchronized Parallel Algorithms on 2-3 Trees. - Baeza-Yates, Ricardo A.; Gabarró, Joaquim; Messeguer, Xavier (1998)

Skip Trees, an Alternative Data Structure to Skip Lists in a Concurrent Approach. - Messeguer, Xavier (RAIRO Theor. Informatics Appl., 1997)

Concurrent Rebalancing of ACL Trees: A Fine-Grained Approach (Extended Abstract). - Bougé, Luc; Gabarró, Joaquim; Messeguer, Xavier; Schabanel, Nicolas (1997)

A Unified Approach to Concurrent and Parallel Algorithms on Balanced Data Structures (Invited Paper). - Gabarró, Joaquim; Messeguer, Xavier (1997)

Concurrent Rebalancing on HyperRed-Black Trees. - Gabarró, Joaquim; Messeguer, Xavier; Riu, Daniel (1997)

A Design of a Parallel Dictionary Using Skip Lists. - Gabarró, Joaquim; Martinez, Conrado; Messeguer, Xavier (Theor. Comput. Sci., 1996)

Average Case Analysis of Fully Dynamic Connectivity for Directed Graphs. - Alimonti, Paola; Leonardi, Stefano; Marchetti-Spaccamela, Alberto; Messeguer, Xavier (1993)

Dynamic Behaviour in Updating Process Over BST of Size Two with Probabilistic Deletion Algorithms. - Messeguer, Xavier (Inf. Process. Lett., 1991)