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ORCIDNadia El-Mabrouk
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2020 – today
- 2024
[j35]Mattéo Delabre
, Nadia El-Mabrouk:
Synesth: Comprehensive Syntenic Reconciliation with Unsampled Lineages. Algorithms 17(5): 186 (2024)- [c36]Mathieu Gascon, Mattéo Delabre, Nadia El-Mabrouk:
Simultaneously Building and Reconciling a Synteny Tree. SPIRE 2024: 127-142 - 2023
- [j34]Mathieu Gascon, Nadia El-Mabrouk:
On the complexity of non-binary tree reconciliation with endosymbiotic gene transfer. Algorithms Mol. Biol. 18(1): 9 (2023) - 2022
- [j33]Mathieu Gascon, Riccardo Dondi, Nadia El-Mabrouk:
MUL-tree pruning for consistency and optimal reconciliation - complexity and algorithms. Theor. Comput. Sci. 937: 22-38 (2022) - [c35]Yoann Anselmetti, Mattéo Delabre, Nadia El-Mabrouk:
Reconciliation with Segmental Duplication, Transfer, Loss and Gain. RECOMB-CG 2022: 124-145 - [c34]Mathieu Gascon, Nadia El-Mabrouk:
Non-Binary Tree Reconciliation with Endosymbiotic Gene Transfer. WABI 2022: 5:1-5:20 - 2021
- [j32]Nadia El-Mabrouk:
Predicting the Evolution of Syntenies - An Algorithmic Review. Algorithms 14(5): 152 (2021) - [j31]Yoann Anselmetti, Nadia El-Mabrouk, Manuel Lafond, Aïda Ouangraoua:
Gene tree and species tree reconciliation with endosymbiotic gene transfer. Bioinform. 37(Supplement): 120-132 (2021) - [c33]Mathieu Gascon, Riccardo Dondi, Nadia El-Mabrouk:
Complexity and Algorithms for MUL-Tree Pruning. IWOCA 2021: 324-339 - 2020
- [j30]Mattéo Delabre, Nadia El-Mabrouk, Katharina T. Huber, Manuel Lafond, Vincent Moulton, Emmanuel Noutahi, Miguel Sautie Castellanos:
Evolution through segmental duplications and losses: a Super-Reconciliation approach. Algorithms Mol. Biol. 15(1): 12 (2020) - [j29]Nadia El-Mabrouk, Donna K. Slonim:
ISMB 2020 proceedings. Bioinform. 36(Supplement-1): i1-i2 (2020) - [j28]Samuel Briand, Christophe Dessimoz, Nadia El-Mabrouk, Manuel Lafond, Gabriela Lobinska:
A generalized Robinson-Foulds distance for labeled trees. BMC Genom. 21(S-10) (2020)
2010 – 2019
- 2019
- [j27]Yana Bromberg, Nadia El-Mabrouk, Predrag Radivojac:
ISMB/ECCB 2019 Proceedings. Bioinform. 35(14): i1-i2 (2019) - [j26]Manuel Lafond, Nadia El-Mabrouk, Katharina T. Huber, Vincent Moulton:
The complexity of comparing multiply-labelled trees by extending phylogenetic-tree metrics. Theor. Comput. Sci. 760: 15-34 (2019) - 2018
- [j25]Emmanuel Noutahi, Nadia El-Mabrouk:
GATC: a genetic algorithm for gene tree construction under the Duplication-Transfer-Loss model of evolution. BMC Genom. 19(S2) (2018) - [j24]Manuel Lafond, Cédric Chauve, Nadia El-Mabrouk, Aïda Ouangraoua:
Gene Tree Construction and Correction Using SuperTree and Reconciliation. IEEE ACM Trans. Comput. Biol. Bioinform. 15(5): 1560-1570 (2018) - [c32]Nikolai Nøjgaard, Nadia El-Mabrouk, Daniel Merkle, Nicolas Wieseke, Marc Hellmuth:
Partial Homology Relations - Satisfiability in Terms of Di-Cographs. COCOON 2018: 403-415 - [c31]Mattéo Delabre, Nadia El-Mabrouk, Katharina T. Huber, Manuel Lafond, Vincent Moulton, Emmanuel Noutahi, Miguel Sautie Castellanos:
Reconstructing the History of Syntenies Through Super-Reconciliation. RECOMB-CG 2018: 179-195 - [i4]Manuel Lafond, Nadia El-Mabrouk, Katharina T. Huber, Vincent Moulton:
The complexity of comparing multiply-labelled trees by extending phylogenetic-tree metrics. CoRR abs/1803.05866 (2018) - 2017
- [j23]Riccardo Dondi, Manuel Lafond, Nadia El-Mabrouk:
Approximating the correction of weighted and unweighted orthology and paralogy relations. Algorithms Mol. Biol. 12(1): 4:1-4:15 (2017) - [j22]Emmanuel Noutahi, Virginie Calderon, Mathieu Blanchette, B. Franz Lang, Nadia El-Mabrouk:
CoreTracker: accurate codon reassignment prediction, applied to mitochondrial genomes. Bioinform. 33(21): 3331-3339 (2017) - [c30]Nadia El-Mabrouk, Aïda Ouangraoua:
A General Framework for Gene Tree Correction Based on Duplication-Loss Reconciliation. WABI 2017: 8:1-8:14 - [i3]Nikolai Nøjgaard, Nadia El-Mabrouk, Daniel Merkle, Nicolas Wieseke, Marc Hellmuth:
Partial Orthology, Paralogy and Xenology Relations - Satisfiability in terms of Di-Cographs. CoRR abs/1711.00504 (2017) - 2016
- [j21]Manuel Lafond, Riccardo Dondi, Nadia El-Mabrouk:
The link between orthology relations and gene trees: a correction perspective. Algorithms Mol. Biol. 11: 4 (2016) - [c29]Manuel Lafond, Emmanuel Noutahi, Nadia El-Mabrouk:
Efficient Non-Binary Gene Tree Resolution with Weighted Reconciliation Cost. CPM 2016: 14:1-14:12 - [c28]Riccardo Dondi, Nadia El-Mabrouk, Manuel Lafond:
Correction of Weighted Orthology and Paralogy Relations - Complexity and Algorithmic Results. WABI 2016: 121-136 - [i2]Manuel Lafond, Cédric Chauve, Nadia El-Mabrouk, Aïda Ouangraoua:
Gene Tree Construction and Correction using SuperTree and Reconciliation. CoRR abs/1610.05068 (2016) - 2015
- [j20]Manuel Lafond, Aïda Ouangraoua, Nadia El-Mabrouk:
Reconstructing a SuperGeneTree minimizing reconciliation. BMC Bioinform. 16(S14): S4 (2015) - [c27]Manuel Lafond, Nadia El-Mabrouk:
Orthology Relation and Gene Tree Correction: Complexity Results. WABI 2015: 66-79 - 2014
- [j19]Manuel Lafond, Cédric Chauve, Riccardo Dondi, Nadia El-Mabrouk:
Polytomy refinement for the correction of dubious duplications in gene trees. Bioinform. 30(17): 519-526 (2014) - [j18]Riccardo Dondi, Nadia El-Mabrouk, Krister M. Swenson:
Gene tree correction for reconciliation and species tree inference: Complexity and algorithms. J. Discrete Algorithms 25: 51-65 (2014) - 2013
- [j17]Manuel Lafond, Magali Semeria, Krister M. Swenson, Eric Tannier, Nadia El-Mabrouk:
Gene tree correction guided by orthology. BMC Bioinform. 14(S-15): S5 (2013) - [j16]Patrick Holloway, Krister M. Swenson, David H. Ardell, Nadia El-Mabrouk:
Ancestral Genome Organization: An Alignment Approach. J. Comput. Biol. 20(4): 280-295 (2013) - [c26]Riccardo Dondi, Nadia El-Mabrouk:
Aligning and Labeling Genomes under the Duplication-Loss Model. CiE 2013: 97-107 - [c25]Billel Benzaid, Riccardo Dondi, Nadia El-Mabrouk:
Duplication-Loss Genome Alignment: Complexity and Algorithm. LATA 2013: 116-127 - [p3]Cédric Chauve, Nadia El-Mabrouk, Laurent Guéguen, Magali Semeria, Eric Tannier:
Duplication, Rearrangement and Reconciliation: A Follow-Up 13 Years Later. Models and Algorithms for Genome Evolution 2013: 47-62 - [p2]Manuel Lafond, Krister M. Swenson, Nadia El-Mabrouk:
Error Detection and Correction of Gene Trees. Models and Algorithms for Genome Evolution 2013: 261-285 - [e2]Cédric Chauve, Nadia El-Mabrouk, Eric Tannier:
Models and Algorithms for Genome Evolution. Springer 2013, ISBN 978-1-4471-5297-2 [contents] - 2012
- [j15]Krister M. Swenson, Andrea Doroftei, Nadia El-Mabrouk:
Gene tree correction for reconciliation and species tree inference. Algorithms Mol. Biol. 7: 31 (2012) - [j14]Krister M. Swenson, Nadia El-Mabrouk:
Gene trees and species trees: irreconcilable differences. BMC Bioinform. 13(S-19): S15 (2012) - [j13]Yves Gagnon, Mathieu Blanchette, Nadia El-Mabrouk:
A flexible ancestral genome reconstruction method based on gapped adjacencies. BMC Bioinform. 13(S-19): S4 (2012) - [c24]Riccardo Dondi, Nadia El-Mabrouk:
Minimum Leaf Removal for Reconciliation: Complexity and Algorithms. CPM 2012: 399-412 - [c23]Patrick Holloway, Krister M. Swenson, David H. Ardell, Nadia El-Mabrouk:
Evolution of Genome Organization by Duplication and Loss: An Alignment Approach. RECOMB 2012: 94-112 - [c22]Manuel Lafond, Krister M. Swenson, Nadia El-Mabrouk:
An Optimal Reconciliation Algorithm for Gene Trees with Polytomies. WABI 2012: 106-122 - [i1]Riccardo Dondi, Nadia El-Mabrouk:
On the Complexity of Minimum Labeling Alignment of Two Genomes. CoRR abs/1206.1877 (2012) - 2011
- [j12]Olivier Tremblay Savard, Denis Bertrand, Nadia El-Mabrouk:
Evolution of orthologous tandemly arrayed gene clusters. BMC Bioinform. 12(S-9): S2 (2011) - [j11]Olivier Tremblay Savard, Yves Gagnon, Denis Bertrand, Nadia El-Mabrouk:
Genome Halving and Double Distance with Losses. J. Comput. Biol. 18(9): 1185-1199 (2011) - [c21]Andrea Doroftei, Nadia El-Mabrouk:
Removing Noise from Gene Trees. WABI 2011: 76-91 - 2010
- [c20]Yves Gagnon, Olivier Tremblay Savard, Denis Bertrand, Nadia El-Mabrouk:
Advances on Genome Duplication Distances. RECOMB-CG 2010: 25-38 - [c19]Denis Bertrand, Yves Gagnon, Mathieu Blanchette, Nadia El-Mabrouk:
Reconstruction of Ancestral Genome Subject to Whole Genome Duplication, Speciation, Rearrangement and Loss. WABI 2010: 78-89
2000 – 2009
- 2009
- [j10]Denis Bertrand, Mathieu Blanchette, Nadia El-Mabrouk:
Genetic Map Refinement Using a Comparative Genomic Approach. J. Comput. Biol. 16(10): 1475-1486 (2009) - [c18]Cédric Chauve, Nadia El-Mabrouk:
New Perspectives on Gene Family Evolution: Losses in Reconciliation and a Link with Supertrees. RECOMB 2009: 46-58 - 2008
- [j9]Cédric Chauve, Jean-Philippe Doyon, Nadia El-Mabrouk:
Gene Family Evolution by Duplication, Speciation, and Loss. J. Comput. Biol. 15(8): 1043-1062 (2008) - [j8]Denis Bertrand, Mathieu Lajoie, Nadia El-Mabrouk:
Inferring Ancestral Gene Orders for a Family of Tandemly Arrayed Genes. J. Comput. Biol. 15(8): 1063-1077 (2008) - [c17]Denis Bertrand, Mathieu Blanchette, Nadia El-Mabrouk:
A Phylogenetic Approach to Genetic Map Refinement. RECOMB-CG 2008: 198-210 - 2007
- [j7]Guillaume Blin, Eric Blais, Danny Hermelin, Pierre Guillon, Mathieu Blanchette, Nadia El-Mabrouk:
Gene Maps Linearization Using Genomic Rearrangement Distances. J. Comput. Biol. 14(4): 394-407 (2007) - [j6]Mathieu Lajoie, Denis Bertrand, Nadia El-Mabrouk, Olivier Gascuel:
Duplication and Inversion History of a Tandemly Repeated Genes Family. J. Comput. Biol. 14(4): 462-478 (2007) - [c16]Jean-Eudes Duchesne, Mathieu Giraud, Nadia El-Mabrouk:
Seed-Based Exclusion Method for Non-coding RNA Gene Search. COCOON 2007: 27-39 - [c15]Cédric Chauve, Jean-Philippe Doyon, Nadia El-Mabrouk:
Inferring a Duplication, Speciation and Loss History from a Gene Tree (Extended Abstract). RECOMB-CG 2007: 45-57 - [c14]Mathieu Lajoie, Denis Bertrand, Nadia El-Mabrouk:
Evolution of Tandemly Arrayed Genes in Multiple Species. RECOMB-CG 2007: 96-109 - [p1]Nadia El-Mabrouk:
Genome rearrangement with gene families. Mathematics of Evolution and Phylogeny 2007 - 2006
- [c13]Guillaume Blin, Eric Blais, Pierre Guillon, Mathieu Blanchette, Nadia El-Mabrouk:
Inferring Gene Orders from Gene Maps Using the Breakpoint Distance. Comparative Genomics 2006: 99-112 - [c12]Denis Bertrand, Mathieu Lajoie, Nadia El-Mabrouk, Olivier Gascuel:
Evolution of Tandemly Repeated Sequences Through Duplication and Inversion. Comparative Genomics 2006: 129-140 - [e1]Guillaume Bourque, Nadia El-Mabrouk:
Comparative Genomics, RECOMB 2006 International Workshop, RCG 2006, Montreal, Canada, September 24-26, 2006, Proceedings. Lecture Notes in Computer Science 4205, Springer 2006, ISBN 3-540-44529-3 [contents] - 2005
- [j5]Nadia El-Mabrouk, Mathieu Raffinot, Jean-Eudes Duchesne, Mathieu Lajoie, Nicolas Luc:
Approximate Matching of Structured Motifs in Dna Sequences. J. Bioinform. Comput. Biol. 3(2): 317-342 (2005) - [c11]Mathieu Lajoie, Nadia El-Mabrouk:
Recovering haplotype structure through recombination and gene conversion. ECCB/JBI 2005: 179 - [c10]Guillaume Bourque, Yasmine Yacef, Nadia El-Mabrouk:
Maximizing Synteny Blocks to Identify Ancestral Homologs. Comparative Genomics 2005: 21-34 - 2004
- [j4]Nadia El-Mabrouk, Damian Labuda:
Haplotypes histories as pathways of recombinations. Bioinform. 20(12): 1836-1841 (2004) - [j3]Nadia El-Mabrouk:
Deriving Haplotypes through Recombination and Gene Conversion Pathways. J. Bioinform. Comput. Biol. 2(2): 241-256 (2004) - [c9]David Sankoff, Jean-François Lefebvre, Elisabeth R. M. Tillier, Adrian Maler, Nadia El-Mabrouk:
The Distribution of Inversion Lengths in Bacteria. Comparative Genomics 2004: 97-108 - 2003
- [j2]Nadia El-Mabrouk, David Sankoff:
The Reconstruction of Doubled Genomes. SIAM J. Comput. 32(3): 754-792 (2003) - [c8]Jean-François Lefebvre, Nadia El-Mabrouk, Elisabeth R. M. Tillier, David Sankoff:
Detection and validation of single gene inversions. ISMB (Supplement of Bioinformatics) 2003: 190-196 - 2002
- [j1]Nadia El-Mabrouk:
Reconstructing an ancestral genome using minimum segments duplications and reversals. J. Comput. Syst. Sci. 65(3): 442-464 (2002) - [c7]Nadia El-Mabrouk, Mathieu Raffinot:
Approximate matching of secondary structures. RECOMB 2002: 156-164 - [c6]Yasmine Ajana, Jean-François Lefebvre, Elisabeth R. M. Tillier, Nadia El-Mabrouk:
Exploring the Set of All Minimal Sequences of Reversals - An Application to Test the Replication-Directed Reversal Hypothesis. WABI 2002: 300-315 - 2000
- [c5]Nadia El-Mabrouk:
Genome Rearrangement by Reversals and Insertions/Deletions of Contiguous Segments. CPM 2000: 222-234
1990 – 1999
- 1999
- [c4]Nadia El-Mabrouk, David Sankoff:
Hybridization and Genome Rearrangement. CPM 1999: 78-87 - [c3]Nadia El-Mabrouk, David Bryant, David Sankoff:
Reconstructing the pre-doubling genome. RECOMB 1999: 154-163 - 1998
- [c2]Nadia El-Mabrouk, Joseph H. Nadeau, David Sankoff:
Genome Halving. CPM 1998: 235-250 - 1996
- [c1]Nadia El-Mabrouk, Maxime Crochemore:
Boyer-Moore Strategy to Efficient Approximate String Matching. CPM 1996: 24-38
Coauthor Index
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last updated on 2024-12-10 20:52 CET by the dblp team
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