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ORCIDBibTeX records: Richard C. Kiefer
@article{DBLP:journals/jbi/XuCZLIAAJKPRPW20,
author = {Zhenxing Xu and
Jingyuan Chou and
Xi Sheryl Zhang and
Yuan Luo and
Tamara Isakova and
Prakash Adekkanattu and
Jessica S. Ancker and
Guoqian Jiang and
Richard C. Kiefer and
Jennifer A. Pacheco and
Luke V. Rasmussen and
Jyotishman Pathak and
Fei Wang},
title = {Identifying sub-phenotypes of acute kidney injury using structured
and unstructured electronic health record data with memory networks},
journal = {J. Biomed. Informatics},
volume = {102},
pages = {103361},
year = {2020},
url = {https://doi.org/10.1016/j.jbi.2019.103361},
doi = {10.1016/J.JBI.2019.103361},
timestamp = {Tue, 11 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/XuCZLIAAJKPRPW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/BrandtKPASAXXAW20,
author = {Pascal S. Brandt and
Richard C. Kiefer and
Jennifer A. Pacheco and
Prakash Adekkanattu and
Evan Sholle and
Faraz S. Ahmad and
Jie Xu and
Zhenxing Xu and
Jessica S. Ancker and
Fei Wang and
Yuan Luo and
Guoqian Jiang and
Jyotishman Pathak and
Luke V. Rasmussen},
title = {Feasibility of Cross-Platform EHR-Driven Phenotyping Using Clinical
Quality Language},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t004-1.4605866/t004-1.4605867/3414764-1.4606174/3410998-1.4606171},
timestamp = {Wed, 17 Apr 2024 11:47:01 +0200},
biburl = {https://dblp.org/rec/conf/amia/BrandtKPASAXXAW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/XuWXABJKLMPRZIP20,
author = {Jie Xu and
Fei Wang and
Zhenxing Xu and
Prakash Adekkanattu and
Pascal S. Brandt and
Guoqian Jiang and
Richard C. Kiefer and
Yuan Luo and
Chengsheng Mao and
Jennifer A. Pacheco and
Luke V. Rasmussen and
Yiye Zhang and
Richard Isaacson and
Jyotishman Pathak},
title = {Identification of Alzheimer's Disease Subtypes from Electronic Health
Records Using a Data-Driven Approach},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t004-1.4605866/t004-1.4605867/3416582-1.4605883/3412798-1.4605880},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/XuWXABJKLMPRZIP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/AdekkanattuJLKX19,
author = {Prakash Adekkanattu and
Guoqian Jiang and
Yuan Luo and
Paul R. Kingsbury and
Zhenxing Xu and
Luke V. Rasmussen and
Jennifer A. Pacheco and
Richard C. Kiefer and
Daniel J. Stone and
Pascal S. Brandt and
Liang Yao and
Yizhen Zhong and
Yu Deng and
Fei Wang and
Jessica S. Ancker and
Thomas R. Campion Jr. and
Jyotishman Pathak},
title = {Evaluating the Portability of an {NLP} System for Processing Echocardiograms:
{A} Retrospective, Multi-site Observational Study},
booktitle = {{AMIA} 2019, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2019},
publisher = {{AMIA}},
year = {2019},
url = {https://knowledge.amia.org/69862-amia-1.4570936/t004-1.4574923/t004-1.4574924/3202784-1.4575177/3203565-1.4575174},
timestamp = {Wed, 17 Apr 2024 11:47:08 +0200},
biburl = {https://dblp.org/rec/conf/amia/AdekkanattuJLKX19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RasmussenBJKPAA19,
author = {Luke V. Rasmussen and
Pascal S. Brandt and
Guoqian Jiang and
Richard C. Kiefer and
Jennifer A. Pacheco and
Prakash Adekkanattu and
Jessica S. Ancker and
Fei Wang and
Zhenxing Xu and
Jyotishman Pathak and
Yuan Luo},
title = {Considerations for Improving the Portability of Electronic Health
Record-Based Phenotype Algorithms},
booktitle = {{AMIA} 2019, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2019},
publisher = {{AMIA}},
year = {2019},
url = {https://knowledge.amia.org/69862-amia-1.4570936/t004-1.4574923/t004-1.4574924/3191971-1.4574997/3202804-1.4574994},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RasmussenBJKPAA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/Xu0AAJKPRPW19,
author = {Zhenxing Xu and
Yuan Luo and
Prakash Adekkanattu and
Jessica S. Ancker and
Guoqian Jiang and
Richard C. Kiefer and
Jennifer A. Pacheco and
Luke V. Rasmussen and
Jyotishman Pathak and
Fei Wang},
editor = {Lucila Ohno{-}Machado and
Brigitte S{\'{e}}roussi},
title = {Stratified Mortality Prediction of Patients with Acute Kidney Injury
in Critical Care},
booktitle = {{MEDINFO} 2019: Health and Wellbeing e-Networks for All - Proceedings
of the 17th World Congress on Medical and Health Informatics, Lyon,
France, 25-30 August 2019},
series = {Studies in Health Technology and Informatics},
volume = {264},
pages = {462--466},
publisher = {{IOS} Press},
year = {2019},
url = {https://doi.org/10.3233/SHTI190264},
doi = {10.3233/SHTI190264},
timestamp = {Tue, 11 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/Xu0AAJKPRPW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1904-04990,
author = {Zhenxing Xu and
Jingyuan Chou and
Xi Sheryl Zhang and
Yuan Luo and
Tamara Isakova and
Prakash Adekkanattu and
Jessica S. Ancker and
Guoqian Jiang and
Richard C. Kiefer and
Jennifer A. Pacheco and
Luke V. Rasmussen and
Jyotishman Pathak and
Fei Wang},
title = {Identification of Predictive Sub-Phenotypes of Acute Kidney Injury
using Structured and Unstructured Electronic Health Record Data with
Memory Networks},
journal = {CoRR},
volume = {abs/1904.04990},
year = {2019},
url = {http://arxiv.org/abs/1904.04990},
eprinttype = {arXiv},
eprint = {1904.04990},
timestamp = {Tue, 11 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1904-04990.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1905-01961,
author = {Prakash Adekkanattu and
Guoqian Jiang and
Yuan Luo and
Paul R. Kingsbury and
Zhenxing Xu and
Luke V. Rasmussen and
Jennifer A. Pacheco and
Richard C. Kiefer and
Daniel J. Stone and
Pascal S. Brandt and
Liang Yao and
Yizhen Zhong and
Yu Deng and
Fei Wang and
Jessica S. Ancker and
Thomas R. Campion Jr. and
Jyotishman Pathak},
title = {Evaluating the Portability of an {NLP} System for Processing Echocardiograms:
{A} Retrospective, Multi-site Observational Study},
journal = {CoRR},
volume = {abs/1905.01961},
year = {2019},
url = {http://arxiv.org/abs/1905.01961},
eprinttype = {arXiv},
eprint = {1905.01961},
timestamp = {Tue, 11 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1905-01961.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/PachecoRKCSCSMA18,
author = {Jennifer A. Pacheco and
Luke V. Rasmussen and
Richard C. Kiefer and
Thomas R. Campion Jr. and
Peter Speltz and
Robert J. Carroll and
Sarah C. Stallings and
Huan Mo and
Monika Ahuja and
Guoqian Jiang and
Eric R. LaRose and
Peggy L. Peissig and
Ning Shang and
Barbara Benoit and
Vivian S. Gainer and
Kenneth Borthwick and
Kathryn L. Jackson and
Ambrish Sharma and
Andy Yizhou Wu and
Abel N. Kho and
Dan M. Roden and
Jyotishman Pathak and
Joshua C. Denny and
William K. Thompson},
title = {A case study evaluating the portability of an executable computable
phenotype algorithm across multiple institutions and electronic health
record environments},
journal = {J. Am. Medical Informatics Assoc.},
volume = {25},
number = {11},
pages = {1540--1546},
year = {2018},
url = {https://doi.org/10.1093/jamia/ocy101},
doi = {10.1093/JAMIA/OCY101},
timestamp = {Thu, 01 May 2025 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/PachecoRKCSCSMA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/NagarKF18,
author = {Shashwat Nagar and
Richard C. Kiefer and
Robert R. Freimuth},
title = {A Scalable Encoding Scheme for Clinical Genomic Results Delivered
Through Web Services and a Mobile Application},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t006-1.4263223/t006-1.4263224/2976364-1.4263366/2976825-1.4263363},
timestamp = {Wed, 17 Apr 2024 11:47:15 +0200},
biburl = {https://dblp.org/rec/conf/amia/NagarKF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/JiangXKPS17,
author = {Guoqian Jiang and
Guohui Xiao and
Richard C. Kiefer and
Eric Prud'hommeaux and
Harold R. Solbrig},
title = {Building an {FHIR} Ontology based Data Access Framework with the {OHDSI}
Data Repositories},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t001-1.4259018/f001-1.4259019/2721495-1.4259239/2730705-1.4259236},
timestamp = {Wed, 17 Apr 2024 11:47:24 +0200},
biburl = {https://dblp.org/rec/conf/amia/JiangXKPS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/KieferRPSDTPJ17,
author = {Richard C. Kiefer and
Luke V. Rasmussen and
Jennifer A. Pacheco and
Peter Speltz and
Joshua C. Denny and
William K. Thompson and
Jyotishman Pathak and
Guoqian Jiang},
title = {Leveraging Value Sets from the Value Set Authority Center {(VSAC)}
in a Standards-Based Clinical Data Repository},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t004-1.4257399/f004-1.4257400/2731219-1.4257980/2730739-1.4257977},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/KieferRPSDTPJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SpeltzRKPTJPD17,
author = {Peter Speltz and
Luke V. Rasmussen and
Richard C. Kiefer and
Jennifer A. Pacheco and
William K. Thompson and
Guoqian Jiang and
Jyotishman Pathak and
Joshua C. Denny},
title = {The Phenotype Execution and Modeling Architecture: {A} Roadmap Towards
Next-generation Phenotyping Using EHRs},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t004-1.4257399/f004-1.4257400/2730456-1.4257578/2731521-1.4257575},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SpeltzRKPTJPD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/JiangKSPS17,
author = {Guoqian Jiang and
Richard C. Kiefer and
Deepak K. Sharma and
Eric Prud'hommeaux and
Harold R. Solbrig},
editor = {Adi V. Gundlapalli and
Marie{-}Christine Jaulent and
Dongsheng Zhao},
title = {A Consensus-Based Approach for Harmonizing the {OHDSI} Common Data
Model with {HL7} {FHIR}},
booktitle = {{MEDINFO} 2017: Precision Healthcare through Informatics - Proceedings
of the 16th World Congress on Medical and Health Informatics, Hangzhou,
China, 21-25 August 2017},
series = {Studies in Health Technology and Informatics},
volume = {245},
pages = {887--891},
publisher = {{IOS} Press},
year = {2017},
url = {https://doi.org/10.3233/978-1-61499-830-3-887},
doi = {10.3233/978-1-61499-830-3-887},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/JiangKSPS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/JiangKPS17,
author = {Guoqian Jiang and
Richard C. Kiefer and
Eric Prud'hommeaux and
Harold R. Solbrig},
editor = {Adi V. Gundlapalli and
Marie{-}Christine Jaulent and
Dongsheng Zhao},
title = {Building Interoperable FHIR-Based Vocabulary Mapping Services: {A}
Case Study of {OHDSI} Vocabularies and Mappings},
booktitle = {{MEDINFO} 2017: Precision Healthcare through Informatics - Proceedings
of the 16th World Congress on Medical and Health Informatics, Hangzhou,
China, 21-25 August 2017},
series = {Studies in Health Technology and Informatics},
volume = {245},
pages = {1327},
publisher = {{IOS} Press},
year = {2017},
url = {https://doi.org/10.3233/978-1-61499-830-3-1327},
doi = {10.3233/978-1-61499-830-3-1327},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/JiangKPS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/JiangKRSMPXMTDC16,
author = {Guoqian Jiang and
Richard C. Kiefer and
Luke V. Rasmussen and
Harold R. Solbrig and
Huan Mo and
Jennifer A. Pacheco and
Jie Xu and
Enid N. H. Montague and
William K. Thompson and
Joshua C. Denny and
Christopher G. Chute and
Jyotishman Pathak},
title = {Developing a data element repository to support EHR-driven phenotype
algorithm authoring and execution},
journal = {J. Biomed. Informatics},
volume = {62},
pages = {232--242},
year = {2016},
url = {https://doi.org/10.1016/j.jbi.2016.07.008},
doi = {10.1016/J.JBI.2016.07.008},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/JiangKRSMPXMTDC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/JiangTRKPMSDP16,
author = {Guoqian Jiang and
William K. Thompson and
Luke V. Rasmussen and
Richard C. Kiefer and
Jennifer A. Pacheco and
Huan Mo and
Peter Speltz and
Joshua C. Denny and
Jyotishman Pathak},
title = {An {NLP} Extension to the Quality Data Model for EHR-Driven Phenotype
Algorithm Authoring and Execution},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t005-1.3362920/f005-1.3362921/2500219-1.3363898/2499803-1.3363893},
timestamp = {Wed, 17 Apr 2024 11:47:32 +0200},
biburl = {https://dblp.org/rec/conf/amia/JiangTRKPMSDP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/MoJPKRPDT16,
author = {Huan Mo and
Guoqian Jiang and
Jennifer A. Pacheco and
Richard C. Kiefer and
Luke V. Rasmussen and
Jyotishman Pathak and
Joshua C. Denny and
William K. Thompson},
title = {A Decompositional Approach to Executing Quality Data Model Algorithms
on the i2b2 Platform},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2016, San Francisco,
CA, USA, March 21-24, 2016},
publisher = {{AMIA}},
year = {2016},
url = {http://knowledge.amia.org/amia-59309-cri2016-1.3011827/t003-1.3012832/f003-1.3012833/a032-1.3012895/a034-1.3012890},
timestamp = {Tue, 03 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cri/MoJPKRPDT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/MinTCDWFSKRSWO16,
author = {Hua Min and
Stuart Turner and
Sherri de Coronado and
Brian Davis and
Trish Whetzel and
Robert R. Freimuth and
Harold R. Solbrig and
Richard C. Kiefer and
Michael Riben and
Grace A. Stafford and
Lawrence W. Wright and
Riki Ohira},
editor = {Pankaj Jaiswal and
Robert Hoehndorf and
Cecilia N. Arighi and
Austin Meier},
title = {Towards a Standard Ontology Metadata Model},
booktitle = {Proceedings of the Joint International Conference on Biological Ontology
and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1747},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1747/IT505\_ICBO2016.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:23 +0100},
biburl = {https://dblp.org/rec/conf/icbo/MinTCDWFSKRSWO16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vldb/HongLKRGWJ16,
author = {Na Hong and
Zheng Li and
Richard C. Kiefer and
Melissa S. Robertson and
Ellen L. Goode and
Chen Wang and
Guoqian Jiang},
editor = {Fusheng Wang and
Lixia Yao and
Gang Luo},
title = {Building an i2b2-Based Integrated Data Repository for Cancer Research:
{A} Case Study of Ovarian Cancer Registry},
booktitle = {Data Management and Analytics for Medicine and Healthcare - Second
International Workshop, {DMAH} 2016, Held at {VLDB} 2016, New Delhi,
India, September 9, 2016, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {10186},
pages = {121--135},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-57741-8\_8},
doi = {10.1007/978-3-319-57741-8\_8},
timestamp = {Tue, 20 Aug 2024 07:54:43 +0200},
biburl = {https://dblp.org/rec/conf/vldb/HongLKRGWJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/MoTRPJKZXMCLMNW15,
author = {Huan Mo and
William K. Thompson and
Luke V. Rasmussen and
Jennifer A. Pacheco and
Guoqian Jiang and
Richard C. Kiefer and
Qian Zhu and
Jie Xu and
Enid N. H. Montague and
David S. Carrell and
Todd Lingren and
Frank D. Mentch and
Yizhao Ni and
Firas H. Wehbe and
Peggy L. Peissig and
Gerard Tromp and
Eric B. Larson and
Christopher G. Chute and
Jyotishman Pathak and
Joshua C. Denny and
Peter Speltz and
Abel N. Kho and
Gail P. Jarvik and
Cosmin Adrian Bejan and
Marc S. Williams and
Kenneth Borthwick and
Terrie E. Kitchner and
Dan M. Roden and
Paul A. Harris},
title = {Desiderata for computable representations of electronic health records-driven
phenotype algorithms},
journal = {J. Am. Medical Informatics Assoc.},
volume = {22},
number = {6},
pages = {1220--1230},
year = {2015},
url = {https://doi.org/10.1093/jamia/ocv112},
doi = {10.1093/JAMIA/OCV112},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/MoTRPJKZXMCLMNW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/XuRSJKMPSZDPTM15,
author = {Jie Xu and
Luke V. Rasmussen and
Pamela L. Shaw and
Guoqian Jiang and
Richard C. Kiefer and
Huan Mo and
Jennifer A. Pacheco and
Peter Speltz and
Qian Zhu and
Joshua C. Denny and
Jyotishman Pathak and
William K. Thompson and
Enid N. H. Montague},
title = {Review and evaluation of electronic health records-driven phenotype
algorithm authoring tools for clinical and translational research},
journal = {J. Am. Medical Informatics Assoc.},
volume = {22},
number = {6},
pages = {1251--1260},
year = {2015},
url = {https://doi.org/10.1093/jamia/ocv070},
doi = {10.1093/JAMIA/OCV070},
timestamp = {Mon, 03 Mar 2025 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/XuRSJKMPSZDPTM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/JiangSKRMPMXSTD15,
author = {Guoqian Jiang and
Harold R. Solbrig and
Richard C. Kiefer and
Luke V. Rasmussen and
Huan Mo and
Jennifer A. Pacheco and
Enid N. H. Montague and
Jie Xu and
Peter Speltz and
William K. Thompson and
Joshua C. Denny and
Christopher G. Chute and
Jyotishman Pathak},
title = {Harmonization of Quality Data Model with {HL7} {FHIR} to Support EHR-driven
Phenotype Authoring and Execution: {A} Pilot Study},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t005-1.2744350/f005-1.2744351/2248041-1.2745100/2247582-1.2745097},
timestamp = {Wed, 17 Apr 2024 11:47:40 +0200},
biburl = {https://dblp.org/rec/conf/amia/JiangSKRMPMXSTD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MoPKRPDT15,
author = {Huan Mo and
Jennifer A. Pacheco and
Richard C. Kiefer and
Luke V. Rasmussen and
Jyotishman Pathak and
Joshua C. Denny and
William K. Thompson},
title = {Translating Electronic Clinical Quality Measures to Executable, Portable,
and Customizable Workflows in {KNIME}},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t001-1.2745946/f001-1.2745947/2248979-1.2746041/2249151-1.2746038},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/MoPKRPDT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MontagueXRDJKPS15,
author = {Enid N. H. Montague and
Jie Xu and
Luke V. Rasmussen and
Joshua C. Denny and
Guoqian Jiang and
Richard C. Kiefer and
Jennifer A. Pacheco and
Peter Speltz and
William K. Thompson and
Jyotishman Pathak},
title = {Usability of a phenotype builder prototype and lessons learned for
the design of phenotyping tools},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t005-1.2744350/f005-1.2744351/2242896-1.2744834/2248127-1.2744830},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/MontagueXRDJKPS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/JiangSKRMSTDCP15,
author = {Guoqian Jiang and
Harold R. Solbrig and
Richard C. Kiefer and
Luke V. Rasmussen and
Huan Mo and
Peter Speltz and
William K. Thompson and
Joshua C. Denny and
Christopher G. Chute and
Jyotishman Pathak},
editor = {Indra Neil Sarkar and
Andrew Georgiou and
Paulo Mazzoncini de Azevedo Marques},
title = {A Standards-based Semantic Metadata Repository to Support EHR-driven
Phenotype Authoring and Execution},
booktitle = {{MEDINFO} 2015: eHealth-enabled Health - Proceedings of the 15th World
Congress on Health and Biomedical Informatics, S{\~{a}}o Paulo, Brazil,
19-23 August 2015},
series = {Studies in Health Technology and Informatics},
volume = {216},
pages = {1098},
publisher = {{IOS} Press},
year = {2015},
url = {https://doi.org/10.3233/978-1-61499-564-7-1098},
doi = {10.3233/978-1-61499-564-7-1098},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/JiangSKRMSTDCP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RasmussenXLZPPT14,
author = {Luke V. Rasmussen and
Jie Xu and
Ruijue Liu and
Qian Zhu and
Jennifer A. Pacheco and
Jyotishman Pathak and
William K. Thompson and
Joshua C. Denny and
Huan Mo and
Richard C. Kiefer and
Peter Speltz and
Enid N. H. Montague},
title = {Evaluation of Existing Phenotype Authoring Tools for Clinical Research},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-005-1.1543914/f-005-1.1543915/a-485-1.1544216/a-486-1.1544213},
timestamp = {Wed, 17 Apr 2024 11:47:48 +0200},
biburl = {https://dblp.org/rec/conf/amia/RasmussenXLZPPT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ZhuMRPPXKSMTDP14,
author = {Qian Zhu and
Huan Mo and
Luke V. Rasmussen and
Andrew R. Post and
Jennifer A. Pacheco and
Jie Xu and
Richard C. Kiefer and
Peter Speltz and
Enid N. H. Montague and
William K. Thompson and
Joshua C. Denny and
Jyotishman Pathak},
title = {Qualitative evaluation of three phenotype information models to find
methotrexate liver injury},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-001-1.1545410/f-001-1.1545411/a-088-1.1545415/a-089-1.1545412},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/ZhuMRPPXKSMTDP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/PathakKC13,
author = {Jyotishman Pathak and
Richard C. Kiefer and
Christopher G. Chute},
title = {Mining Drug-Drug Interaction Patterns from Linked Clinical Data},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-06-1.582200/f-006-1.582201/a-401-1.582800/a-402-1.582797},
timestamp = {Wed, 17 Apr 2024 11:47:55 +0200},
biburl = {https://dblp.org/rec/conf/amia/PathakKC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/PathakKC13,
author = {Jyotishman Pathak and
Richard C. Kiefer and
Christopher G. Chute},
editor = {Guo{-}Zheng Li and
Sunghoon Kim and
Michael Hughes and
Geoffrey J. McLachlan and
Hongye Sun and
Xiaohua Hu and
Habtom W. Ressom and
Baoyan Liu and
Michael N. Liebman},
title = {Mining drug-drug interaction patterns from linked data: {A} case study
for Warfarin, Clopidogrel, and Simvastatin},
booktitle = {2013 {IEEE} International Conference on Bioinformatics and Biomedicine,
Shanghai, China, December 18-21, 2013},
pages = {23--30},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/BIBM.2013.6732595},
doi = {10.1109/BIBM.2013.6732595},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/PathakKC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dils/PathakKC13,
author = {Jyotishman Pathak and
Richard C. Kiefer and
Christopher G. Chute},
editor = {Christopher J. O. Baker and
Greg Butler and
Igor Jurisica},
title = {Mining Anti-coagulant Drug-Drug Interactions from Electronic Health
Records Using Linked Data},
booktitle = {Data Integration in the Life Sciences - 9th International Conference,
{DILS} 2013, Montreal, QC, Canada, July 11-12, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7970},
pages = {128--140},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-39437-9\_11},
doi = {10.1007/978-3-642-39437-9\_11},
timestamp = {Sun, 06 Oct 2024 20:59:46 +0200},
biburl = {https://dblp.org/rec/conf/dils/PathakKC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/PathakKC13,
author = {Jyotishman Pathak and
Richard C. Kiefer and
Christopher G. Chute},
editor = {Christoph Ulrich Lehmann and
Elske Ammenwerth and
Christian N{\o}hr},
title = {Using Linked Data for Mining Drug-Drug Interactions in Electronic
Health Records},
booktitle = {{MEDINFO} 2013 - Proceedings of the 14th World Congress on Medical
and Health Informatics, 20-13 August 2013, Copenhagen, Denmark},
series = {Studies in Health Technology and Informatics},
volume = {192},
pages = {682--686},
publisher = {{IOS} Press},
year = {2013},
url = {https://doi.org/10.3233/978-1-61499-289-9-682},
doi = {10.3233/978-1-61499-289-9-682},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/PathakKC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/PathakKBC12,
author = {Jyotishman Pathak and
Richard C. Kiefer and
Suzette J. Bielinski and
Christopher G. Chute},
title = {Applying semantic web technologies for phenome-wide scan using an
electronic health record linked Biobank},
journal = {J. Biomed. Semant.},
volume = {3},
pages = {10},
year = {2012},
url = {https://doi.org/10.1186/2041-1480-3-10},
doi = {10.1186/2041-1480-3-10},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/PathakKBC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/PathakKBC12,
author = {Jyotishman Pathak and
Richard C. Kiefer and
Suzette J. Bielinski and
Christopher G. Chute},
title = {Mining the Human Phenome using Semantic Web Technologies: {A} Case
Study for Type 2 Diabetes},
booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
Chicago, Illinois, USA, November 3-7, 2012},
publisher = {{AMIA}},
year = {2012},
url = {https://knowledge.amia.org/amia-55142-a2012a-1.636547/t-003-1.640625/f-001-1.640626/a-081-1.640990/a-082-1.640987},
timestamp = {Wed, 17 Apr 2024 11:48:03 +0200},
biburl = {https://dblp.org/rec/conf/amia/PathakKBC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/PathakKFBC12,
author = {Jyotishman Pathak and
Richard C. Kiefer and
Robert R. Freimuth and
Suzette J. Bielinski and
Christopher G. Chute},
title = {Mining Genotype-Phenotype Associations from Electronic Health Records
and Biorepositories using Semantic Web Technologies},
booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
Chicago, Illinois, USA, November 3-7, 2012},
publisher = {{AMIA}},
year = {2012},
url = {https://knowledge.amia.org/amia-55142-a2012a-1.636547/t-007-1.639272/f-001-1.639273/a-505-1.639681/a-506-1.639678},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/PathakKFBC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/TeagnoKPZS12,
author = {Joseph Teagno and
Richard C. Kiefer and
Jyotishman Pathak and
G. Q. Zhang and
Satya Sanket Sahoo},
title = {A Distributed Semantic Web Approach for Cohort Identification},
booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
Chicago, Illinois, USA, November 3-7, 2012},
publisher = {{AMIA}},
year = {2012},
url = {https://knowledge.amia.org/amia-55142-a2012a-1.636547/t-007-1.639272/f-001-1.639273/a-581-1.639450/a-582-1.639447},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/TeagnoKPZS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ihi/PathakKC12,
author = {Jyotishman Pathak and
Richard C. Kiefer and
Christopher G. Chute},
editor = {Gang Luo and
Jiming Liu and
Christopher C. Yang},
title = {Applying linked data principles to represent patient's electronic
health records at Mayo clinic: a case report},
booktitle = {{ACM} International Health Informatics Symposium, {IHI} '12, Miami,
FL, USA, January 28-30, 2012},
pages = {455--464},
publisher = {{ACM}},
year = {2012},
url = {https://doi.org/10.1145/2110363.2110415},
doi = {10.1145/2110363.2110415},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ihi/PathakKC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/PathakKC11,
author = {Jyotishman Pathak and
Richard C. Kiefer and
Christopher G. Chute},
editor = {Adrian Paschke and
Albert Burger and
Paolo Romano and
M. Scott Marshall and
Andrea Splendiani},
title = {The linked clinical data project: applying semantic web technologies
for clinical and translational research using electronic medical records},
booktitle = {Proceedings of the 4th International Workshop on Semantic Web Applications
and Tools for the Life Sciences, {SWAT4LS} 2011, London, United Kingdom,
December 07-09, 2011},
pages = {94--95},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2166896.2166920},
doi = {10.1145/2166896.2166920},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/PathakKC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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