A case study evaluating the portability of an executable computable phenotype algorithm across multiple institutions and electronic health record environments. - Pacheco, Jennifer A.; Rasmussen, Luke V.; Kiefer, Richard C.; Campion, Thomas R., Jr.; Speltz, Peter; Carroll, Robert J.; Stallings, Sarah C.; Mo, Huan; Ahuja, Monika; Jiang, Guoqian; LaRose, Eric R.; Peissig, Peggy L.; et al. (J. Am. Medical Informatics Assoc., 2018)

A Machine Learning-Based Approach for Identifying Atopic Dermatitis in Adults from Electronic Health Records. - Gustafson, Erin N.; Furmanchuk, Al'ona; Pacheco, Jennifer A.; Wehbe, Firas H.; Jackson, Kathryn L.; Kho, Abel N.; Thompson, William K.; Silverberg, Jonathan (2017)

Leveraging Value Sets from the Value Set Authority Center (VSAC) in a Standards-Based Clinical Data Repository. - Kiefer, Richard C.; Rasmussen, Luke V.; Pacheco, Jennifer A.; Speltz, Peter; Denny, Joshua C.; Thompson, William K.; Pathak, Jyotishman; Jiang, Guoqian (2017)

The Phenotype Execution and Modeling Architecture: A Roadmap Towards Next-generation Phenotyping Using EHRs. - Speltz, Peter; Rasmussen, Luke V.; Kiefer, Richard C.; Pacheco, Jennifer A.; Thompson, William K.; Jiang, Guoqian; Pathak, Jyotishman; Denny, Joshua C. (2017)

A Machine Learning Algorithm for Identifying Atopic Dermatitis in Adults from Electronic Health Records. - Gustafson, Erin N.; Pacheco, Jennifer A.; Wehbe, Firas H.; Silverberg, Jonathan; Thompson, William K. (2017)

PheKB: a catalog and workflow for creating electronic phenotype algorithms for transportability. - Kirby, Jacqueline; Speltz, Peter; Rasmussen, Luke V.; Basford, Melissa A.; Gottesman, Omri; Peissig, Peggy L.; Pacheco, Jennifer A.; Tromp, Gerard; Pathak, Jyotishman; Carrell, David S.; Ellis, Stephen B.; Lingren, Todd; et al. (J. Am. Medical Informatics Assoc., 2016)

Developing a data element repository to support EHR-driven phenotype algorithm authoring and execution. - Jiang, Guoqian; Kiefer, Richard C.; Rasmussen, Luke V.; Solbrig, Harold R.; Mo, Huan; Pacheco, Jennifer A.; Xu, Jie; Montague, Enid N. H.; Thompson, William K.; Denny, Joshua C.; Chute, Christopher G.; Pathak, Jyotishman (J. Biomed. Informatics, 2016)

An NLP Extension to the Quality Data Model for EHR-Driven Phenotype Algorithm Authoring and Execution. - Jiang, Guoqian; Thompson, William K.; Rasmussen, Luke V.; Kiefer, Richard C.; Pacheco, Jennifer A.; Mo, Huan; Speltz, Peter; Denny, Joshua C.; Pathak, Jyotishman (2016)

A Decompositional Approach to Executing Quality Data Model Algorithms on the i2b2 Platform. - Mo, Huan; Jiang, Guoqian; Pacheco, Jennifer A.; Kiefer, Richard C.; Rasmussen, Luke V.; Pathak, Jyotishman; Denny, Joshua C.; Thompson, William K. (2016)

Desiderata for computable representations of electronic health records-driven phenotype algorithms. - Mo, Huan; Thompson, William K.; Rasmussen, Luke V.; Pacheco, Jennifer A.; Jiang, Guoqian; Kiefer, Richard C.; Zhu, Qian; Xu, Jie; Montague, Enid N. H.; Carrell, David S.; Lingren, Todd; Mentch, Frank D.; et al. (J. Am. Medical Informatics Assoc., 2015)

Review and evaluation of electronic health records-driven phenotype algorithm authoring tools for clinical and translational research. - Xu, Jie; Rasmussen, Luke V.; Shaw, Pamela L.; Jiang, Guoqian; Kiefer, Richard C.; Mo, Huan; Pacheco, Jennifer A.; Speltz, Peter; Zhu, Qian; Denny, Joshua C.; Pathak, Jyotishman; Thompson, William K.; et al. (J. Am. Medical Informatics Assoc., 2015)

Harmonization of Quality Data Model with HL7 FHIR to Support EHR-driven Phenotype Authoring and Execution: A Pilot Study. - Jiang, Guoqian; Solbrig, Harold R.; Kiefer, Richard C.; Rasmussen, Luke V.; Mo, Huan; Pacheco, Jennifer A.; Montague, Enid N. H.; Xu, Jie; Speltz, Peter; Thompson, William K.; Denny, Joshua C.; Chute, Christopher G.; et al. (2015)

A Genome- and Phenome- Wide Study of Diverticulosis. - Joo, Yoonjung Y.; Pacheco, Jennifer A.; Armstrong, Loren L.; Thompson, William K.; Carroll, Robert J.; Denny, Joshua C.; Peissig, Peggy L.; Linneman, James G.; Pathak, Jyotishman; Nadkarni, Girish N.; Rasmussen-Torvik, Laura; Hayes, M. Geoffrey; et al. (2015)

Translating Electronic Clinical Quality Measures to Executable, Portable, and Customizable Workflows in KNIME. - Mo, Huan; Pacheco, Jennifer A.; Kiefer, Richard C.; Rasmussen, Luke V.; Pathak, Jyotishman; Denny, Joshua C.; Thompson, William K. (2015)

Usability of a phenotype builder prototype and lessons learned for the design of phenotyping tools. - Montague, Enid N. H.; Xu, Jie; Rasmussen, Luke V.; Denny, Joshua C.; Jiang, Guoqian; Kiefer, Richard C.; Pacheco, Jennifer A.; Speltz, Peter; Thompson, William K.; Pathak, Jyotishman (2015)

PhEMA: Phenotype Modeling, Sharing and Execution Architecture. - Pathak, Jyotishman; Denny, Joshua C.; Thompson, William K.; Rasmussen, Luke V. (2015)

A Standards-based Semantic Metadata Repository to Support EHR-driven Phenotype Authoring and Execution. - Jiang, Guoqian; Solbrig, Harold R.; Kiefer, Richard C.; Rasmussen, Luke V.; Mo, Huan; Speltz, Peter; Thompson, William K.; Denny, Joshua C.; Chute, Christopher G.; Pathak, Jyotishman (2015)

Design patterns for the development of electronic health record-driven phenotype extraction algorithms. - Rasmussen, Luke V.; Thompson, William K.; Pacheco, Jennifer A.; Kho, Abel N.; Carrell, David; Pathak, Jyotishman; Peissig, Peggy L.; Tromp, Gerard; Denny, Joshua C.; Starren, Justin B. (J. Biomed. Informatics, 2014)

Automating Extraction and Calculation of Daily Dose and Duration for Medications in EHRs. - Pacheco, Jennifer A.; Thompson, William K.; Jackson, Kathryn L.; Kho, Abel N. (2014)

Evaluation of Existing Phenotype Authoring Tools for Clinical Research. - Rasmussen, Luke V.; Xu, Jie; Liu, Ruijue; Zhu, Qian; Pacheco, Jennifer A.; Pathak, Jyotishman; Thompson, William K.; Denny, Joshua C.; Mo, Huan; Kiefer, Richard C.; Speltz, Peter; Montague, Enid N. H. (2014)

Qualitative evaluation of three phenotype information models to find methotrexate liver injury. - Zhu, Qian; Mo, Huan; Rasmussen, Luke V.; Post, Andrew R.; Pacheco, Jennifer A.; Xu, Jie; Kiefer, Richard C.; Speltz, Peter; Montague, Enid N. H.; Thompson, William K.; Denny, Joshua C.; Pathak, Jyotishman (2014)

Use of diverse electronic medical record systems to identify genetic risk for type 2 diabetes within a genome-wide association study. - Kho, Abel N.; Hayes, M. Geoffrey; Rasmussen-Torvik, Laura; Pacheco, Jennifer A.; Thompson, William K.; Armstrong, Loren L.; Denny, Joshua C.; Peissig, Peggy L.; Miller, Aaron W.; Wei, Wei-Qi; Bielinski, Suzette J.; Chute, Christopher G.; et al. (J. Am. Medical Informatics Assoc., 2012)

Portability of an algorithm to identify rheumatoid arthritis in electronic health records. - Carroll, Robert J.; Thompson, William K.; Eyler, Anne E.; Mandelin, Arthur M.; Cai, Tianxi; Zink, Raquel M.; Pacheco, Jennifer A.; Boomershine, Chad S.; Lasko, Thomas A.; Xu, Hua; Karlson, Elizabeth W.; Pérez, Raúl G.; et al. (J. Am. Medical Informatics Assoc., 2012)

A Geographic Exploration of Colon Polyps. - Roberts, Anna; Muthalagu, Arun; Pacheco, Jennifer A.; Thompson, William K.; Gawron, Andrew; Kho, Abel N. (2012)

An Evaluation of the NQF Quality Data Model for Representing Electronic Health Record Driven Phenotyping Algorithms. - Thompson, William K.; Rasmussen, Luke V.; Pacheco, Jennifer A.; Peissig, Peggy L.; Denny, Joshua C.; Kho, Abel N.; Miller, Aaron W.; Pathak, Jyotishman (2012)

Open Source Workflow Tools for Electronic Health Record Based Phenotyping Algorithms. - Thompson, William K.; Rasmussen, Luke V.; Pacheco, Jennifer A.; Roberts, Anna; Muthalagu, Arun; Kho, Abel N. (2012)