BibTeX records: François Radvanyi

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@article{DBLP:journals/ploscb/CreuxZRT24,
  author       = {Constance Creux and
                  Farida Zehraoui and
                  Fran{\c{c}}ois Radvanyi and
                  Fariza Tahi},
  title        = {Comparison and benchmark of deep learning methods for non-coding {RNA}
                  classification},
  journal      = {PLoS Comput. Biol.},
  volume       = {20},
  number       = {9},
  pages        = {1012446},
  year         = {2024},
  url          = {https://doi.org/10.1371/journal.pcbi.1012446},
  doi          = {10.1371/JOURNAL.PCBI.1012446},
  timestamp    = {Sat, 30 Nov 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ploscb/CreuxZRT24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/OmnesABRT23,
  author       = {Lo{\"{\i}}c Omnes and
                  Eric Angel and
                  Pierre Bartet and
                  Fran{\c{c}}ois Radvanyi and
                  Fariza Tahi},
  title        = {Prediction of Secondary Structure for Long Non-Coding RNAs using a
                  Recursive Cutting Method based on Deep Learning},
  booktitle    = {23rd {IEEE} International Conference on Bioinformatics and Bioengineering,
                  {BIBE} 2023, Dayton, OH, USA, December 4-6, 2023},
  pages        = {14--21},
  publisher    = {{IEEE}},
  year         = {2023},
  url          = {https://doi.org/10.1109/BIBE60311.2023.00011},
  doi          = {10.1109/BIBE60311.2023.00011},
  timestamp    = {Mon, 03 Mar 2025 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bibe/OmnesABRT23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/ChampionCNERB21,
  author       = {Magali Champion and
                  Julien Chiquet and
                  Pierre Neuvial and
                  Mohamed Elati and
                  Fran{\c{c}}ois Radvanyi and
                  Etienne Birmel{\'{e}}},
  title        = {Identification of deregulation mechanisms specific to cancer subtypes},
  journal      = {J. Bioinform. Comput. Biol.},
  volume       = {19},
  number       = {1},
  pages        = {2140003:1--2140003:16},
  year         = {2021},
  url          = {https://doi.org/10.1142/S0219720021400035},
  doi          = {10.1142/S0219720021400035},
  timestamp    = {Sun, 25 Jul 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jbcb/ChampionCNERB21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CantiniKRBRZ19,
  author       = {Laura Cantini and
                  Ulykbek Kairov and
                  Aur{\'{e}}lien de Reyni{\`{e}}s and
                  Emmanuel Barillot and
                  Fran{\c{c}}ois Radvanyi and
                  Andrei Yu. Zinovyev},
  title        = {Assessing reproducibility of matrix factorization methods in independent
                  transcriptomes},
  journal      = {Bioinform.},
  volume       = {35},
  number       = {21},
  pages        = {4307--4313},
  year         = {2019},
  url          = {https://doi.org/10.1093/bioinformatics/btz225},
  doi          = {10.1093/BIOINFORMATICS/BTZ225},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/CantiniKRBRZ19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DelatolaLMRRW17,
  author       = {Eleni Ioanna Delatola and
                  Emilie Lebarbier and
                  Tristan Mary{-}Huard and
                  Fran{\c{c}}ois Radvanyi and
                  St{\'{e}}phane Robin and
                  Jennifer Wong},
  title        = {SegCorr a statistical procedure for the detection of genomic regions
                  of correlated expression},
  journal      = {{BMC} Bioinform.},
  volume       = {18},
  number       = {1},
  pages        = {333},
  year         = {2017},
  url          = {https://doi.org/10.1186/s12859-017-1742-5},
  doi          = {10.1186/S12859-017-1742-5},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/DelatolaLMRRW17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NicolleRE15,
  author       = {R{\'{e}}my Nicolle and
                  Fran{\c{c}}ois Radvanyi and
                  Mohamed Elati},
  title        = {CoRegNet: reconstruction and integrated analysis of co-regulatory
                  networks},
  journal      = {Bioinform.},
  volume       = {31},
  number       = {18},
  pages        = {3066--3068},
  year         = {2015},
  url          = {https://doi.org/10.1093/bioinformatics/btv305},
  doi          = {10.1093/BIOINFORMATICS/BTV305},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/NicolleRE15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WinterhalterNLTRE14,
  author       = {Charles Winterhalter and
                  R{\'{e}}my Nicolle and
                  A. Louis and
                  Cuong To and
                  Fran{\c{c}}ois Radvanyi and
                  Mohamed Elati},
  title        = {Pepper: cytoscape app for protein complex expansion using protein-protein
                  interaction networks},
  journal      = {Bioinform.},
  volume       = {30},
  number       = {23},
  pages        = {3419--3420},
  year         = {2014},
  url          = {https://doi.org/10.1093/bioinformatics/btu517},
  doi          = {10.1093/BIOINFORMATICS/BTU517},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WinterhalterNLTRE14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AshoorHKRBBB13,
  author       = {Haitham Ashoor and
                  Aur{\'{e}}lie H{\'{e}}rault and
                  Aur{\'{e}}lie Kamoun and
                  Fran{\c{c}}ois Radvanyi and
                  Vladimir B. Bajic and
                  Emmanuel Barillot and
                  Valentina Boeva},
  title        = {HMCan: a method for detecting chromatin modifications in cancer samples
                  using ChIP-seq data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {23},
  pages        = {2979--2986},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt524},
  doi          = {10.1093/BIOINFORMATICS/BTT524},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/AshoorHKRBBB13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/GriecoCBRKT13,
  author       = {Luca Grieco and
                  Laurence Calzone and
                  Isabelle Bernard{-}Pierrot and
                  Fran{\c{c}}ois Radvanyi and
                  Brigitte Kahn{-}Perl{\`{e}}s and
                  Denis Thieffry},
  title        = {Integrative Modelling of the Influence of {MAPK} Network on Cancer
                  Cell Fate Decision},
  journal      = {PLoS Comput. Biol.},
  volume       = {9},
  number       = {10},
  year         = {2013},
  url          = {https://doi.org/10.1371/journal.pcbi.1003286},
  doi          = {10.1371/JOURNAL.PCBI.1003286},
  timestamp    = {Mon, 03 Mar 2025 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ploscb/GriecoCBRKT13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmla/NicolleER12,
  author       = {R{\'{e}}my Nicolle and
                  Mohamed Elati and
                  Fran{\c{c}}ois Radvanyi},
  title        = {Network Transformation of Gene Expression for Feature Extraction},
  booktitle    = {11th International Conference on Machine Learning and Applications,
                  ICMLA, Boca Raton, FL, USA, December 12-15, 2012. Volume 1},
  pages        = {108--113},
  publisher    = {{IEEE}},
  year         = {2012},
  url          = {https://doi.org/10.1109/ICMLA.2012.27},
  doi          = {10.1109/ICMLA.2012.27},
  timestamp    = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/icmla/NicolleER12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrancotteBBRRB11,
  author       = {Bryan Brancotte and
                  Anne Biton and
                  Isabelle Bernard{-}Pierrot and
                  Fran{\c{c}}ois Radvanyi and
                  Fabien Reyal and
                  Sarah Cohen Boulakia},
  title        = {Gene List significance at-a-glance with GeneValorization},
  journal      = {Bioinform.},
  volume       = {27},
  number       = {8},
  pages        = {1187--1189},
  year         = {2011},
  url          = {https://doi.org/10.1093/bioinformatics/btr073},
  doi          = {10.1093/BIOINFORMATICS/BTR073},
  timestamp    = {Sun, 06 Oct 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BrancotteBBRRB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ElatiNBBRR07,
  author       = {Mohamed Elati and
                  Pierre Neuvial and
                  Monique Bolotin{-}Fukuhara and
                  Emmanuel Barillot and
                  Fran{\c{c}}ois Radvanyi and
                  C{\'{e}}line Rouveirol},
  title        = {{LICORN:} learning cooperative regulation networks from gene expression
                  data},
  journal      = {Bioinform.},
  volume       = {23},
  number       = {18},
  pages        = {2407--2414},
  year         = {2007},
  url          = {https://doi.org/10.1093/bioinformatics/btm352},
  doi          = {10.1093/BIOINFORMATICS/BTM352},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ElatiNBBRR07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tsi/ElatiRR07,
  author       = {Mohamed Elati and
                  Fran{\c{c}}ois Radvanyi and
                  C{\'{e}}line Rouveirol},
  title        = {Fouille de donn{\'{e}}es pour l'extraction de grands r{\'{e}}seaux
                  de r{\'{e}}gulation g{\'{e}}n{\'{e}}tique},
  journal      = {Tech. Sci. Informatiques},
  volume       = {26},
  number       = {1-2},
  pages        = {173--196},
  year         = {2007},
  url          = {https://doi.org/10.3166/tsi.26.173-196},
  doi          = {10.3166/TSI.26.173-196},
  timestamp    = {Wed, 24 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tsi/ElatiRR07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RouveirolSHRVBR06,
  author       = {C{\'{e}}line Rouveirol and
                  Nicolas Stransky and
                  Philippe Hup{\'{e}} and
                  Philippe La Rosa and
                  Eric Viara and
                  Emmanuel Barillot and
                  Fran{\c{c}}ois Radvanyi},
  title        = {Computation of recurrent minimal genomic alterations from array-CGH
                  data},
  journal      = {Bioinform.},
  volume       = {22},
  number       = {7},
  pages        = {849--856},
  year         = {2006},
  url          = {https://doi.org/10.1093/bioinformatics/btl004},
  doi          = {10.1093/BIOINFORMATICS/BTL004},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RouveirolSHRVBR06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RosaVHPLNBLSRMBJRGRSSDARB06,
  author       = {Philippe La Rosa and
                  Eric Viara and
                  Philippe Hup{\'{e}} and
                  Ga{\"{e}}lle Pierron and
                  St{\'{e}}phane Liva and
                  Pierre Neuvial and
                  Isabel Brito and
                  S{\'{e}}verine Lair and
                  Nicolas Servant and
                  Nicolas Robine and
                  Elodie Mani{\'{e}} and
                  Caroline Brennetot and
                  Isabelle Janoueix{-}Lerosey and
                  Virginie Raynal and
                  Nad{\`{e}}ge Gruel and
                  C{\'{e}}line Rouveirol and
                  Nicolas Stransky and
                  Marc{-}Henri Stern and
                  Olivier Delattre and
                  Alain Aurias and
                  Fran{\c{c}}ois Radvanyi and
                  Emmanuel Barillot},
  title        = {{VAMP:} Visualization and analysis of array-CGH, transcriptome and
                  other molecular profiles},
  journal      = {Bioinform.},
  volume       = {22},
  number       = {17},
  pages        = {2066--2073},
  year         = {2006},
  url          = {https://doi.org/10.1093/bioinformatics/btl359},
  doi          = {10.1093/BIOINFORMATICS/BTL359},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RosaVHPLNBLSRMBJRGRSSDARB06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NeuvialHBLMBRAB06,
  author       = {Pierre Neuvial and
                  Philippe Hup{\'{e}} and
                  Isabel Brito and
                  St{\'{e}}phane Liva and
                  Elodie Mani{\'{e}} and
                  Caroline Brennetot and
                  Fran{\c{c}}ois Radvanyi and
                  Alain Aurias and
                  Emmanuel Barillot},
  title        = {Spatial normalization of array-CGH data},
  journal      = {{BMC} Bioinform.},
  volume       = {7},
  pages        = {264},
  year         = {2006},
  url          = {https://doi.org/10.1186/1471-2105-7-264},
  doi          = {10.1186/1471-2105-7-264},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/NeuvialHBLMBRAB06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ElfilaliLVRRB06,
  author       = {Adil Elfilali and
                  S{\'{e}}verine Lair and
                  Catia Verbeke and
                  Philippe La Rosa and
                  Fran{\c{c}}ois Radvanyi and
                  Emmanuel Barillot},
  title        = {{ITTACA:} a new database for integrated tumor transcriptome array
                  and clinical data analysis},
  journal      = {Nucleic Acids Res.},
  volume       = {34},
  number       = {Database-Issue},
  pages        = {613--616},
  year         = {2006},
  url          = {https://doi.org/10.1093/nar/gkj022},
  doi          = {10.1093/NAR/GKJ022},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/ElfilaliLVRRB06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WillbrandRNTF05,
  author       = {Karen Willbrand and
                  Fran{\c{c}}ois Radvanyi and
                  Jean{-}Pierre Nadal and
                  Jean{-}Paul Thiery and
                  Thomas M. A. Fink},
  title        = {Identifying genes from up-down properties of microarray expression
                  series},
  journal      = {Bioinform.},
  volume       = {21},
  number       = {20},
  pages        = {3859--3864},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti549},
  doi          = {10.1093/BIOINFORMATICS/BTI549},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WillbrandRNTF05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/f-egc/ElatiRR05,
  author       = {Mohamed Elati and
                  C{\'{e}}line Rouveirol and
                  Fran{\c{c}}ois Radvanyi},
  editor       = {Suzanne Pinson and
                  Nicole Vincent},
  title        = {Apprentissage de signatures de facteurs de transcription {\`{a}} partir
                  de donn{\'{e}}es d'expression},
  booktitle    = {Extraction et gestion des connaissances (EGC'2005), Actes des cinqui{\`{e}}mes
                  journ{\'{e}}es Extraction et Gestion des Connaissances, Paris,
                  France, 18-21 janvier 2005, 2 Volumes},
  series       = {Revue des Nouvelles Technologies de l'Information},
  volume       = {{RNTI-E-3}},
  pages        = {667--672},
  publisher    = {C{\'{e}}padu{\`{e}}s-{\'{E}}ditions},
  year         = {2005},
  url          = {https://editions-rnti.fr/?inprocid=1000416},
  timestamp    = {Wed, 06 Nov 2024 17:10:35 +0100},
  biburl       = {https://dblp.org/rec/conf/f-egc/ElatiRR05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HupeSTRB04,
  author       = {Philippe Hup{\'{e}} and
                  Nicolas Stransky and
                  Jean{-}Paul Thiery and
                  Fran{\c{c}}ois Radvanyi and
                  Emmanuel Barillot},
  title        = {Analysis of array {CGH} data: from signal ratio to gain and loss of
                  {DNA} regions},
  journal      = {Bioinform.},
  volume       = {20},
  number       = {18},
  pages        = {3413--3422},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth418},
  doi          = {10.1093/BIOINFORMATICS/BTH418},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HupeSTRB04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/RouveirolR04,
  author       = {C{\'{e}}line Rouveirol and
                  Fran{\c{c}}ois Radvanyi},
  editor       = {Katharina Morik and
                  Jean{-}Fran{\c{c}}ois Boulicaut and
                  Arno Siebes},
  title        = {Local Pattern Discovery in Array-CGH Data},
  booktitle    = {Local Pattern Detection, International Seminar, Dagstuhl Castle, Germany,
                  April 12-16, 2004, Revised Selected Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {3539},
  pages        = {135--152},
  publisher    = {Springer},
  year         = {2004},
  url          = {https://doi.org/10.1007/11504245\_9},
  doi          = {10.1007/11504245\_9},
  timestamp    = {Tue, 14 May 2019 10:00:51 +0200},
  biburl       = {https://dblp.org/rec/conf/dagstuhl/RouveirolR04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/BoulakiaLSGRBF04,
  author       = {Sarah Cohen Boulakia and
                  S{\'{e}}verine Lair and
                  Nicolas Stransky and
                  St{\'{e}}phane Graziani and
                  Fran{\c{c}}ois Radvanyi and
                  Emmanuel Barillot and
                  Christine Froidevaux},
  title        = {Selecting biomedical data sources according to user preferences},
  booktitle    = {Proceedings Twelfth International Conference on Intelligent Systems
                  for Molecular Biology/Third European Conference on Computational Biology
                  2004, Glasgow, UK, July 31-August 4, 2004},
  pages        = {86--93},
  year         = {2004},
  url          = {https://doi.org/10.1093/bioinformatics/bth949},
  doi          = {10.1093/BIOINFORMATICS/BTH949},
  timestamp    = {Sat, 19 Oct 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/BoulakiaLSGRBF04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BroetRR02,
  author       = {Philippe Bro{\"{e}}t and
                  Sylvia Richardson and
                  Fran{\c{c}}ois Radvanyi},
  title        = {Bayesian Hierarchical Model for Identifying Changes in Gene Expression
                  from Microarray Experiments},
  journal      = {J. Comput. Biol.},
  volume       = {9},
  number       = {4},
  pages        = {671--683},
  year         = {2002},
  url          = {https://doi.org/10.1089/106652702760277381},
  doi          = {10.1089/106652702760277381},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/BroetRR02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}