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Stephen D. Larson
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2010 – 2019
- 2016
- [j7]Andrey Palyanov
, Sergey Khayrulin
, Stephen D. Larson:
Application of smoothed particle hydrodynamics to modeling mechanisms of biological tissue. Adv. Eng. Softw. 98: 1-11 (2016) - [i2]Gopal P. Sarma
, Travis W. Jacobs, Mark D. Watts, S. Vahid Ghayoomie, Stephen D. Larson, Richard C. Gerkin
:
Unit testing, model validation, and biological simulation. F1000Research 5: 1946 (2016) - 2015
- [i1]Gopal P. Sarma, Travis W. Jacobs, Mark D. Watts, Vahid Ghayoomi, Richard C. Gerkin, Stephen D. Larson:
Unit Testing, Model Validation, and Biological Simulation. CoRR abs/1508.04635 (2015) - 2014
- [j6]Balazs Szigeti
, Padraig Gleeson
, Michael Vella, Sergey Khayrulin
, Andrey Palyanov
, Jim Hokanson, Michael Currie, Matteo Cantarelli, Giovanni Idili, Stephen D. Larson:
OpenWorm: an open-science approach to modeling Caenorhabditis elegans. Frontiers Comput. Neurosci. 8: 137 (2014) - 2013
- [j5]Stephen D. Larson, Maryann E. Martone
:
NeuroLex.org: an online framework for neuroscience knowledge. Frontiers Neuroinformatics 7: 18 (2013) - 2012
- [j4]Andrey Palyanov
, Sergey Khayrulin
, Stephen D. Larson, Alexander Dibert:
Towards a virtual C. elegans: A framework for simulation and visualization of the neuromuscular system in a 3D physical environment. Silico Biol. 11(3-4): 137-147 (2012) - [c7]Fahim T. Imam
, Stephen D. Larson, Anita E. Bandrowski
, Jeffrey S. Grethe
, Amarnath Gupta, Maryann E. Martone:
Maturation of Neuroscience Information Framework: An Ontology Driven Information System for Neuroscience. FOIS 2012: 15-28 - 2011
- [j3]Michael Hawrylycz, Richard A. Baldock
, Albert Burger, Tsutomu Hashikawa, G. Allan Johnson
, Maryann E. Martone
, Lydia Ng, Christopher Lau, Stephen D. Larson, Jonathan Nissanov, Luis Puelles
, Seth Ruffins, Fons J. Verbeek, Ilya Zaslavsky, Jyl Boline:
Digital Atlasing and Standardization in the Mouse Brain. PLoS Comput. Biol. 7(2) (2011) - [c6]Fahim T. Imam, Stephen D. Larson, Jeffrey S. Grethe, Amarnath Gupta, Anita E. Bandrowski, Maryann E. Martone:
NIFSTD and NeuroLex: Comprehensive Neuroscience Ontology Development Based on Multiple Biomedical Ontologies and Community Involvement. ICBO 2011 - [c5]Chris Mungall, David Anderson, Anita E. Bandrowski, Brian A. Canada, Andrew Chatr-aryamontri, Keith C. Cheng, P. Michael Conn, Kara Dolinski, Mark H. Ellisman, Janan T. Eppig, Jeffrey S. Grethe, Joseph W. Kemnitz, Shawn Iadonato, Stephen D. Larson, Charles Magness, Maryann E. Martone, Mike Tyers, Carlo Torniai, Olga G. Troyanskaya, Judith Turner, Monte Westerfield, Melissa A. Haendel:
An Ontology-Based Approach to Linking Model Organisms and Resources to Human Diseases. ICBO 2011
2000 – 2009
- 2009
- [c4]Stephen D. Larson, Sarah Maynard, Fahim T. Imam, Maryann E. Martone:
NeuroLex.org - A semantic wiki for neuroinformatics based on the NIF Standard Ontology. SWAT4LS 2009 - 2008
- [j2]William J. Bug, Giorgio A. Ascoli, Jeffrey S. Grethe
, Amarnath Gupta, Christine Fennema-Notestine
, Angela R. Laird
, Stephen D. Larson, Daniel L. Rubin, Gordon M. Shepherd, Jessica A. Turner
, Maryann E. Martone
:
The NIFSTD and BIRNLex Vocabularies: Building Comprehensive Ontologies for Neuroscience. Neuroinformatics 6(3): 175-194 (2008) - [p1]Maryann E. Martone, Ilya Zaslavsky, Amarnath Gupta, Asif Memon, Joshua Tran, Willy Wong, Lisa Fong, Stephen D. Larson, Mark H. Ellisman:
The Smart Atlas: Spatial and Semantic Strategies for Multiscale Integration of Brain Data. Anatomy Ontologies for Bioinformatics 2008: 267-286 - 2007
- [j1]Stephen D. Larson, Lisa Fong, Amarnath Gupta, Christopher Condit, William J. Bug, Maryann E. Martone
:
A formal ontology of subcellular neuroanatomy. Frontiers Neuroinformatics 1: 3 (2007) - [c3]Amarnath Gupta, Stephen D. Larson, Christopher Condit, Sandeep Gupta, Lisa Fong, Li Chen, Maryann E. Martone:
Toward an Ontological Database for Subcellular Neuroanatomy. ER Workshops 2007: 64-73 - [c2]Lisa Fong, Stephen D. Larson, Amarnath Gupta, Christopher Condit, William J. Bug, Li Chen, Ruth West, Stephan Lamont, Masako Terada, Maryann E. Martone:
An Ontology-Driven Knowledge Environment For Subcellular Neuroanatomy. OWLED 2007 - [c1]Stephen D. Larson, Maryann E. Martone:
Rule-Based Reasoning With A Multi-Scale Neuroanatomical Ontology. OWLED 2007
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