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ORCIDJournal of Integrative Bioinformatics, Volume 12
Volume 12, Number 1, 2015
- Luis Fernando Castillo
, Germán López-Gartner, Gustavo A. Isaza, Mariana Sánchez, Jeferson Arango, Daniel Agudelo-Valencia, Sergio Castaño:
GITIRBio: A Semantic and Distributed Service Oriented-Architecture for Bioinformatics Pipeline. - Vladimir Sokolov, Bulat S. Zuraev, Sergei A. Lashin, Yury G. Matushkin:
Web application for automatic prediction of gene translation elongation efficiency. - Ivan V. Protsyuk, German A. Grekhov, Alexey V. Tiunov, Mikhail Y. Fursov:
Shared bioinformatics databases within the Unipro UGENE platform. - Dayong Guo, Xiaojing Li, Pan Zhu, Yanrong Feng, Juan Yang, Zhihong Zheng, Wei Yang, Enuo Zhang, Yang Yu, Shenglai Zhou, Hongyu Wang:
Online High-throughput Mutagenesis Designer Using Scoring Matrix of Sequence-specific Endonucleases.
Volume 12, Number 2, 2015
- Falk Schreiber, Gary D. Bader, Martin Golebiewski, Michael Hucka, Benjamin Kormeier, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Stephan Weise:
Specifications of Standards in Systems and Synthetic Biology. - Autumn A. Cuellar, Warren Hedley, Melanie Nelson, Catherine M. Lloyd, Matt D. B. Halstead, David P. Bullivant, David P. Nickerson, Peter J. Hunter, Poul M. F. Nielsen:
The CellML 1.1 Specification. - Michael T. Cooling, Peter J. Hunter:
The CellML Metadata Framework 2.0 Specification. - Frank T. Bergmann, Nicolas Rodriguez, Nicolas Le Novère:
COMBINE Archive Specification Version 1. - Frank T. Bergmann, Jonathan Cooper, Nicolas Le Novère, David P. Nickerson, Dagmar Waltemath:
Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 2. - Stuart L. Moodie, Nicolas Le Novère, Emek Demir, Huaiyu Mi, Alice Villéger:
Systems Biology Graphical Notation: Process Description language Level 1 Version 1.3. - Anatoly A. Sorokin, Nicolas Le Novère, Augustin Luna, Tobias Czauderna, Emek Demir, Robin Haw, Huaiyu Mi, Stuart L. Moodie, Falk Schreiber, Alice Villéger:
Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2. - Huaiyu Mi, Falk Schreiber, Stuart L. Moodie, Tobias Czauderna, Emek Demir, Robin Haw, Augustin Luna, Nicolas Le Novère, Anatoly A. Sorokin, Alice Villéger:
Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2 . - Michael Hucka, Frank T. Bergmann, Stefan Hoops, Sarah M. Keating, Sven Sahle, James C. Schaff, Lucian P. Smith, Darren J. Wilkinson:
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core. - Ralph Gauges, Ursula Rost, Sven Sahle, Katja Wengler, Frank Thomas Bergmann:
The Systems Biology Markup Language (SBML) Level 3 Package: Layout, Version 1 Core. - Lucian Paul Smith, Michael Hucka, Stefan Hoops, Andrew Finney, Martin Ginkel, Chris J. Myers, Ion I. Moraru, Wolfram Liebermeister:
SBML Level 3 package: Hierarchical Model Composition, Version 1 Release 3. - Brett G. Olivier, Frank T. Bergmann:
The Systems Biology Markup Language (SBML) Level 3 Package: Flux Balance Constraints. - Claudine Chaouiya, Sarah M. Keating, Duncan Bérenguier, Aurélien Naldi, Denis Thieffry, Martijn P. van Iersel, Nicolas Le Novère, Tomás Helikar:
The Systems Biology Markup Language (SBML) Level 3 Package: Qualitative Models, Version 1, Release 1. - Michael Hucka, Frank T. Bergmann, Andreas Dräger, Stefan Hoops, Sarah M. Keating, Nicolas Le Novère, Chris J. Myers, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Dagmar Waltemath, Darren J. Wilkinson:
Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions. - Bryan Bartley, Jacob Beal, Kevin Clancy, Goksel Misirli, Nicholas Roehner, Ernst Oberortner, Matthew R. Pocock, Michael Bissell, Curtis Madsen, Tramy Nguyen, Zhen Zhang, John H. Gennari, Chris J. Myers, Anil Wipat, Herbert M. Sauro:
Synthetic Biology Open Language (SBOL) Version 2.0.0.
Volume 12, Number 3, 2015
- Larisa Kiseleva, Sofya K. Garushyants, Hongwu Ma, David J. W. Simpson, Viatcheslav Fedorovich, Michael F. Cohen, Igor Goryanin:
Taxonomic and functional metagenomic analysis of anodic communities in two pilot-scale microbial fuel cells treating different industrial wastewaters. - Markus List, Michael Franz, Qihua Tan, Jan Mollenhauer, Jan Baumbach:
OpenLabNotes - An Electronic Laboratory Notebook Extension for OpenLabFramework. - Bertrand Ameline de Cadeville, Olivier Loréal, Fouzia Moussouni-Marzolf:
RetroMine, or how to provide in-depth retrospective studies from Medline in a glance: the hepcidin use-case. - Mohamed S. Tleis, Fons J. Verbeek:
Machine Learning approach to discriminate Saccharomyces cerevisiae yeast cells using sophisticated image features. - Ruben Acuña, Jacques Chomilier, Zoé Lacroix:
Managing and Documenting Legacy Scientific Workflows.
Volume 12, Number 4, 2015
- Alfonso González-Briones, Juan Ramos, Juan Francisco de Paz, Juan Manuel Corchado:
Multi-agent System for Obtaining Relevant Genes in Expression Analysis between Young and Older Women with Triple Negative Breast Cancer. - Maíra Maciel Tomazzoli, Remi Dal Pai Neto, Rodolfo Moresco, Larissa Westphal, Amélia Regina Somensi-Zeggio, Leandro Specht, Christopher Costa, Miguel Rocha, Marcelo Maraschin:
Discrimination of Brazilian propolis according to the seasoning using chemometrics and machine learning based on UV-Vis scanning data. - Rodolfo Moresco, Virgílio Gavicho Uarrota, Aline Pereira, Maíra Maciel Tomazzoli, Eduardo da C. Nunes, Luiz Augusto Martins Peruch, Jussara Gazzola, Christopher Costa, Miguel Rocha, Marcelo Maraschin:
UV-visible scanning spectrophotometry and chemometric analysis as tools for carotenoids analysis in cassava genotypes (Manihot esculenta Crantz). - Eduardo Valente, Miguel Rocha:
Integrating data from heterogeneous DNA microarray platforms. - Ana Alão Freitas, Hugo Costa, Miguel Rocha, Isabel Rocha:
Extracting kinetic information from literature with KineticRE.
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