Computer Methods and Programs in Biomedicine, Volume 208

Volume 208, September 2021

Section II: Biomedical signal and image processing methods

• 
  Yuqing Sun, Bo Zhang, Lianghua Xia:
  Effect of low wall shear stress on the morphology of endothelial cells and its evaluation indicators. 106082
• 
  Odyssée Merveille, Thomas Andrew Lampert, Jessica Schmitz, Germain Forestier, Friedrich Feuerhake, Cédric Wemmert:
  An automatic framework for fusing information from differently stained consecutive digital whole slide images: A case study in renal histology. 106157

Section V: Others

• 
  Nonso Nnamoko, Luis Adrián Cabrera-Diego, Daniel Campbell, George Sanders, Stuart Fairclough, Ioannis Korkontzelos:
  Personalised Accelerometer Cut-point Prediction for Older Adults' Movement Behaviours using a Machine Learning approach. 106165

Section II: Biomedical signal and image processing methods

• 
  Jader Giraldo-Guzmán, Marian Kotas, Francisco Castells, Sonia H. Contreras Ortiz, Miguel Urina-Triana:
  Estimation of PQ distance dispersion for atrial fibrillation detection. 106167
• 
  Shuai Li, Dongmei Hao, Bing Liu, Zhijie Yin, Lin Yang, Jie Yu:
  Evaluation of eyestrain with vertical electrooculogram. 106171
• 
  Deanna C. E. Sinex, Shaniel T. Bowen, Ahmed Kashkoush, Arianna Rosemond, Danielle Carter, Prahlad G. Menon, Pamela A. Moalli, Steven D. Abramowitch:
  The establishment of a 3D anatomical coordinate system for defining vaginal axis and spatial position. 106175

Section III: Modelling & Simulation

• 
  Edward De Brouwer, Thijs Becker, Yves Moreau, Eva Kubala Havrdova, Maria Trojano, Sara Eichau, Serkan Ozakbas, Marco Onofrj, Pierre Grammond, Jens Kuhle, Ludwig Kappos, Patrizia Sola, Elisabetta Cartechini, Jeannette Lechner-Scott, Raed Alroughani, Oliver Gerlach, Tomas Kalincik, Franco Granella, Francois Grand'Maison, Roberto Bergamaschi, Maria Jose Sa, Bart Van Wijmeersch, Aysun Soysal, Jose Luis Sanchez-Menoyo, Claudio Solaro, Cavit Boz, Gerardo Iuliano, Katherine Buzzard, Eduardo Aguera-Morales, Murat Terzi, Tamara Castillo Trivio, Daniele Spitaleri, Vincent Van Pesch, Vahid Shaygannejad, Fraser Moore, Celia Oreja Guevara, Davide Maimone, Riadh Gouider, Tunde Csepany, Cristina Ramo-Tello, Liesbet M. Peeters:
  Longitudinal machine learning modeling of MS patient trajectories improves predictions of disability progression. 106180

Section II: Biomedical signal and image processing methods

• 
  Guoli Song, Tian Shan, Min Bao, Yunhui Liu, Yiwen Zhao, Baoshi Chen:
  Automatic brain tumour diagnostic method based on a back propagation neural network and an extended set-membership filter. 106188
• 
  Chao Liao, Chengliang Wang, Jianying Bai, Libin Lan, Xing Wu:
  Deep learning for registration of region of interest in consecutive wireless capsule endoscopy frames. 106189

Section IV: Classification and interpretation

• 
  Zhaoyang Song, Xiaoqiang Zhao, Yongyong Hui, Hongmei Jiang:
  Progressive back-projection network for COVID-CT super-resolution. 106193

Section II: Biomedical signal and image processing methods

• 
  Lachlan Webb, Minna Kauppila, James A. Roberts, Sampsa Vanhatalo, Nathan J. Stevenson:
  Automated detection of artefacts in neonatal EEG with residual neural networks. 106194
• 
  Wenna Wang, Xiuwei Zhang, Yu Ma, Hengfei Cui, Rui Xia, Yanning Zhang:
  A robust discriminative multi-atlas label fusion method for hippocampus segmentation from MR image. 106197

Section III: Modelling & Simulation

• 
  Ivan Benemerito, W. Griffiths, James Allsopp, W. Furnass, P. Bhattacharya, Xinshan Li, A. Marzo, S. Wood, Marco Viceconti, Andrew J. Narracott:
  Delivering computationally-intensive digital patient applications to the clinic: An exemplar solution to predict femoral bone strength from CT data. 106200

Section V: Others

• 
  Fabian León-Vargas, Clare Martin, Maira García-Jaramillo, Arantza Aldea, Yenny Leal, Pau Herrero, Angie K. Reyes, Diana Henao, Ana María Gomez:
  Is a cloud-based platform useful for diabetes management in Colombia? The Tidepool experience. 106205

Section II: Biomedical signal and image processing methods

• 
  Zefang Lin, Jianping Huang, Yingyin Chen, Xiao Zhang, Wei Zhao, Yong Li, Ligong Lu, Meixiao Zhan, Xiaofei Jiang, Xiong Liang:
  A high resolution representation network with multi-path scale for retinal vessel segmentation. 106206

Section III: Modelling & Simulation

• 
  Ruixuan Dai, Chenyang Lu, Linda Yun, Eric Lenze, Michael Avidan, Thomas George Kannampallil:
  Comparing stress prediction models using smartwatch physiological signals and participant self-reports. 106207

Section II: Biomedical signal and image processing methods

• 
  Jingjing Wang, Jun Gao, Jinwen Ren, Zhenye Luan, Zishu Yu, Yanhua Zhao, Yuefeng Zhao:
  DFP-ResUNet: Convolutional Neural Network with a Dilated Convolutional Feature Pyramid for Multimodal Brain Tumor Segmentation. 106208

Section V: Others

• 
  Oscar Martinez, Carol Martínez, Carlos A. Parra, Saul Rugeles, Daniel R. Suárez:
  Machine learning for surgical time prediction. 106220

Section IV: Classification and interpretation

• 
  Zhemin Zhuang, Zengbiao Yang, Alex Noel Joseph Raj, Chuliang Wei, Pengcheng Jin, Shuxin Zhuang:
  Breast ultrasound tumor image classification using image decomposition and fusion based on adaptive multi-model spatial feature fusion. 106221
• 
  Elisa Mejía-Mejía, James M. May, Mohamed Elgendi, Panayiotis A. Kyriacou:
  Classification of blood pressure in critically ill patients using photoplethysmography and machine learning. 106222

Section III: Modelling & Simulation

• 
  Gernot Plank, Axel Loewe, Aurel Neic, Christoph M. Augustin, Yung-Lin Huang, Matthias A. F. Gsell, Elias Karabelas, Mark Nothstein, Anton J. Prassl, Jorge Sánchez, Gunnar Seemann, Edward J. Vigmond:
  The openCARP simulation environment for cardiac electrophysiology. 106223

Section II: Biomedical signal and image processing methods

• 
  Gourav Modanwal, Adithya Vellal, Maciej A. Mazurowski:
  Normalization of breast MRIs using cycle-consistent generative adversarial networks. 106225
• 
  Peixu Wang, Xingyu Liu, Jia Xu, Tengqi Li, Wei Sun, Zirong Li, Fuqiang Gao, Lijun Shi, Zhizhuo Li, Xinjie Wu, Xin Xu, Xiaoyu Fan, Chengxin Li, Yiling Zhang, Yicheng An:
  Deep learning for diagnosing osteonecrosis of the femoral head based on magnetic resonance imaging. 106229
• 
  Hao Ma, Yanni Zou, Peter X. Liu:
  MHSU-Net: A more versatile neural network for medical image segmentation. 106230

Section V: Others

• 
  Jorge Calvillo-Arbizu, Isabel Roman-Martinez, Javier Reina-Tosina:
  Internet of things in health: Requirements, issues, and gaps. 106231
• 
  Dingding Xiao, Chong Song, Naoki Nakamura, Masaharu Nakayama:
  Development of an application concerning fast healthcare interoperability resources based on standardized structured medical information exchange version 2 data. 106232

Section II: Biomedical signal and image processing methods

• 
  Florence Rossant, Michel Pâques:
  Normalization of series of fundus images to monitor the geographic atrophy growth in dry age-related macular degeneration. 106234
• 
  Guanghui Yue, Jinqi Liao, Yongjun Wang, Liangge He, Tianfu Wang, Guangqian Zhou, Baiying Lei:
  Quality evaluation of induced pluripotent stem cell colonies by fusing multi-source features. 106235
• 
  Fernando Pérez-García, Rachel Sparks, Sébastien Ourselin:
  TorchIO: A Python library for efficient loading, preprocessing, augmentation and patch-based sampling of medical images in deep learning. 106236

Section V: Others

• 
  Jordi Lladós, Fernando Cores, Fernando Guirado, Josep L. Lérida:
  Accurate consistency-based MSA reducing the memory footprint. 106237
• 
  Linda Nab, Maarten van Smeden, Ruth H. Keogh, Rolf H. H. Groenwold:
  Mecor: An R package for measurement error correction in linear regression models with a continuous outcome. 106238

Section II: Biomedical signal and image processing methods

• 
  Antonella D. Pontoriero, Giovanna Nordio, Rubaida Easmin, Alessio Giacomel, Barbara Santangelo, Sameer Jahuar, Ilaria Bonoldi, Maria Rogdaki, Federico E. Turkheimer, Oliver D. Howes, Mattia Veronese:
  Automated Data Quality Control in FDOPA brain PET Imaging using Deep Learning. 106239
• 
  Maciej Czepita, Anna Fabijanska:
  Image processing pipeline for the detection of blood flow through retinal vessels with subpixel accuracy in fundus images. 106240

Section III: Modelling & Simulation

• 
  Tao-Qian Tang, Sheng-Yen Hsu, Anurag Dahiya, Chang Hwei Soh, Kuang C. Lin:
  Numerical modeling of pulsatile blood flow through a mini-oxygenator in artificial lungs. 106241
• 
  Danko Z. Milasinovic, Dragan B. Sekulic, Dalibor D. Nikolic, Arso M. Vukicevic, Aleksandar P. Tomic, Uros M. Miladinovic, Dragana S. Paunovic, Nenad D. Filipovic:
  Virtual ABI: A computationally derived ABI index for noninvasive assessment of femoro-popliteal bypass surgery outcome. 106242
• 
  Susie Ryu, Jun Hong Kim, Heejin Yu, Hwi-Dong Jung, Suk Won Chang, Jeong Jin Park, Soonhyuk Hong, Hyung-Ju Cho, Yoon Jeong Choi, Jongeun Choi, Joon Sang Lee:
  Diagnosis of obstructive sleep apnea with prediction of flow characteristics according to airway morphology automatically extracted from medical images: Computational fluid dynamics and artificial intelligence approach. 106243

Section IV: Classification and interpretation

• 
  Bikram Kumar, Deepak Gupta:
  Universum based Lagrangian twin bounded support vector machine to classify EEG signals. 106244

Section II: Biomedical signal and image processing methods

• 
  Jianzhang Li, Sven Nebelung, Justus Schock, Björn Rath, Markus Tingart, Yu Liu, Nad Siroros, Jörg Eschweiler:
  A Novel Combined Level Set Model for Carpus Segmentation from Magnetic Resonance Images with Prior Knowledge aligned in Polar Coordinate System. 106245

Section III: Modelling & Simulation

• 
  Reza Shamsabadi, Hamid Reza Baghani:
  Impact assessment of breast glandularity on relative biological effectiveness of low energy IORT X-rays through Monte Carlo simulation. 106246

Section II: Biomedical signal and image processing methods

• 
  Manuel Abbas, Dominique Somme, Régine Le Bouquin-Jeannès:
  D-SORM: A digital solution for remote monitoring based on the attitude of wearable devices. 106247

Section IV: Classification and interpretation

• 
  Sebastian Roldan-Vasco, Andrés Orozco-Duque, Juan Camilo Suarez-Escudero, Juan Rafael Orozco-Arroyave:
  Machine learning based analysis of speech dimensions in functional oropharyngeal dysphagia. 106248

Section II: Biomedical signal and image processing methods

• 
  Zeyuan Chen, Zikuan Chen:
  Spatiotemporal multiscale ICA could invariantly extract task (motor) modes from wavelet subbands of fMRI data. 106249
• 
  Tingxi Wen, Jiafu Zhuang, Yu Du, Linjie Yang, Jianfei Xu:
  Dual-Sampling Attention Pooling for Graph Neural Networks on 3D Mesh. 106250
• 
  Joonmyeong Choi, Sungman Cho, Jong Woo Chung, Namkug Kim:
  Video recognition of simple mastoidectomy using convolutional neural networks: Detection and segmentation of surgical tools and anatomical regions. 106251
• 
  Defu Qiu, Yuhu Cheng, Xuesong Wang:
  Gradual back-projection residual attention network for magnetic resonance image super-resolution. 106252

Section III: Modelling & Simulation

• 
  Kamil Ozden, Yigit Yazicioglu, Cuneyt Sert:
  Simulation of turbulence induced sound generation inside stenosed femoral artery models with different severities and eccentricities. 106253

Section IV: Classification and interpretation

• 
  Yan Liu, Guorong Shen, Shuxaing Chen:
  Magnetic resonance image diagnosis of femoral head necrosis based on ResNet18 network. 106254

Section V: Others

• 
  Yongdong Ouyang, Liang Xu, Mohammad Ehsanul Karim, Paul Gustafson, Hubert Wong:
  CRTpowerdist: An R package to calculate attained power and construct the power distribution for cross-sectional stepped-wedge and parallel cluster randomized trials. 106255
• 
  Emrah Akkoyun, Hamidreza Gharahi, Sebastian T. Kwon, Byron Zambrano, Akshay Rao, Aybar C. Acar, Whal Lee, Seungik Baek:
  Defining a master curve of abdominal aortic aneurysm growth and its potential utility of clinical management. 106256

Section III: Modelling & Simulation

• 
  Shi-yu Pan, Ming Ding, Jing Huang, Yan Cai, Ying-zi Huang:
  Airway resistance variation correlates with prognosis of critically ill COVID-19 patients: A computational fluid dynamics study. 106257

Section II: Biomedical signal and image processing methods

• 
  Xinyu Luo, Liuyang Yang, Hongyu Cai, Rui Tang, Yu Chen, Wei Li:
  Multi-classification of arrhythmias using a HCRNet on imbalanced ECG datasets. 106258
• 
  Vandécia Rejane Monteiro Fernandes, Geraldo Braz Junior, Anselmo Cardoso de Paiva, Aristófanes Corrêa Silva, Marcelo Gattass:
  Bayesian convolutional neural network estimation for pediatric pneumonia detection and diagnosis. 106259
• 
  Haigen Hu, Aizhu Liu, Qianwei Zhou, Qiu Guan, Xiaoxin Li, Qi Chen:
  An adaptive learning method of anchor shape priors for biological cells detection and segmentation. 106260
• 
  Maureen van Eijnatten, Leonardo Rundo, Kees Joost Batenburg, Felix Lucka, Emma Beddowes, Carlos Caldas, Ferdia A. Gallagher, Evis Sala, Carola-Bibiane Schönlieb, Ramona Woitek:
  3D deformable registration of longitudinal abdominopelvic CT images using unsupervised deep learning. 106261

Section III: Modelling & Simulation

• 
  Jose Manuel Naveiro, Sergio Puértolas, Jorge Rosell, A. Hidalgo, Elena Ibarz, J. Albareda, Luis Gracia:
  A new approach for initial callus growth during fracture healing in long bones. 106262

Section IV: Classification and interpretation

• 
  Hao Chen, Wei Li, Youyu Zhu:
  Improved window adaptive gray level co-occurrence matrix for extraction and analysis of texture characteristics of pulmonary nodules. 106263

Section III: Modelling & Simulation

• 
  Qing Lan, Yifu Li, John Robertson, Ran Jin:
  Modeling of pre-transplantation liver viability with spatial-temporal smooth variable selection. 106264

Section II: Biomedical signal and image processing methods

• 
  Shiyu Wang, Xiang Liu, Jingwen Zhao, Yiwen Liu, Shuhong Liu, Yisi Liu, Jingmin Zhao:
  Computer auxiliary diagnosis technique of detecting cholangiocarcinoma based on medical imaging: A review. 106265

Section III: Modelling & Simulation

• 
  Jincheng Liu, Boyan Mao, Yue Feng, Bao Li, Jian Liu, Youjun Liu:
  Closed-loop geometric multi-scale heart-coronary artery model for the numerical calculation of fractional flow reserve. 106266
• 
  Han Lai, Yousaf Ali Khan, Syed Zaheer Abbas, Wathek Chammam:
  Meta-computational techniques' for managing spare data: An application in off-pump heart surgery. 106267

Section II: Biomedical signal and image processing methods

• 
  Jinke Wang, Peiqing Lv, Haiying Wang, Changfa Shi:
  SAR-U-Net: Squeeze-and-excitation block and atrous spatial pyramid pooling based residual U-Net for automatic liver segmentation in Computed Tomography. 106268
• 
  Guoyang Liu, Xiao Han, Lan Tian, Weidong Zhou, Hui Liu:
  ECG quality assessment based on hand-crafted statistics and deep-learned S-transform spectrogram features. 106269

Section III: Modelling & Simulation

• 
  Fuhao Mo, Qiang Zhang, Haotian Zhang, Jianjun Long, Yulong Wang, Gong Chen, Jing Ye:
  A simulation-based framework with a proprioceptive musculoskeletal model for evaluating the rehabilitation exoskeleton system. 106270

Section II: Biomedical signal and image processing methods

• 
  Yanchao Huang, Huobiao Zhu, Xiaoman Duan, Xiaotong Hong, Hao Sun, Wenbing Lv, Lijun Lu, Qianjin Feng:
  GapFill-Recon Net: A Cascade Network for simultaneously PET Gap Filling and Image Reconstruction. 106271

Section III: Modelling & Simulation

• 
  Diego Alastuey-López, Belén Seral, María Ángeles Pérez:
  Biomechanical evaluation of syndesmotic fixation techniques via finite element analysis: Screw vs. suture button. 106272
• 
  Chethan K N, N. Shyamasunder Bhat, Mohammad Zuber, Satish Shenoy B:
  Finite element analysis of hip implant with varying in taper neck lengths under static loading conditions. 106273

Section II: Biomedical signal and image processing methods

• 
  Shuo Gao, Li Gao, Xiongwen Quan, Han Zhang, Hang Bai, Chuanze Kang:
  Automatic arteriosclerotic retinopathy grading using four-channel with image merging. 106274
• 
  Manuel Pérez-Pelegrí, José Vicente Monmeneu, María Pilar López-Lereu, Lucía Pérez-Pelegrí, Alicia M. Maceira, Vicente Bodí, David Moratal:
  Automatic left ventricle volume calculation with explainability through a deep learning weak-supervision methodology. 106275

Section IV: Classification and interpretation

• 
  Tracie L. Shing, John S. Preisser, Richard C. Zink:
  GEECORR: A SAS macro for regression models of correlated binary responses and within-cluster correlation using generalized estimating equations. 106276

Section II: Biomedical signal and image processing methods

• 
  Yanna Zhao, Changxu Dong, Gaobo Zhang, Yaru Wang, Xin Chen, Weikuan Jia, Qi Yuan, Fangzhou Xu, Yuanjie Zheng:
  EEG-Based Seizure detection using linear graph convolution network with focal loss. 106277

Section IV: Classification and interpretation

• 
  Shaoquan Li, Jianye Zheng, Dongjiao Li:
  Precise segmentation of non-enhanced computed tomography in patients with ischemic stroke based on multi-scale U-Net deep network model. 106278
• 
  Gözde Dursun, Saurabh Balkrishna Tandale, Rutwik Gulakala, Jörg Eschweiler, Mersedeh Tohidnezhad, Bernd Markert, Marcus Stoffel:
  Development of convolutional neural networks for recognition of tenogenic differentiation based on cellular morphology. 106279

Section II: Biomedical signal and image processing methods

• 
  Bruno Muller, Régis Lengellé:
  Cross-Gram matrices and their use in transfer learning: Application to automatic REM detection using heart rate. 106280

Section IV: Classification and interpretation

• 
  Jungsun Yoo, Tae Joon Jun, Young-Hak Kim:
  xECGNet: Fine-tuning attention map within convolutional neural network to improve detection and explainability of concurrent cardiac arrhythmias. 106281
• 
  Hezhe Qiao, Lin Chen, Zi Ye, Fan Zhu:
  Early Alzheimer's disease diagnosis with the contrastive loss using paired structural MRIs. 106282

Section II: Biomedical signal and image processing methods

• 
  Temesgen Bihonegn, Sumit Kaushik, Avinash Bansal, Lubomir Vojtisek, Jan Slovak:
  Geodesic fiber tracking in white matter using activation function. 106283
• 
  Jibin Wang:
  Automated detection of premature ventricular contraction based on the improved gated recurrent unit network. 106284

Section IV: Classification and interpretation

• 
  Chengjie Meng, Debiao Yang, Dan Chen:
  Cerebral aneurysm image segmentation based on multi-modal convolutional neural network. 106285
• 
  Leiming Jin, Wenying Du, Baoqiang Ma, Debin Zeng, Ying Han, Shuyu Li:
  Feature level-based group lasso method for amnestic mild cognitive impairment diagnosis. 106286

Section I: Biocybernetics and Big Data

• 
  Nian Lu, Wei-Jing Zhang, Lu Dong, Jun-Ying Chen, Yan-Lin Zhu, Sheng-Hai Zhang, Jian-Hua Fu, Shao-Han Yin, Zhi-Cheng Li, Chuan-Miao Xie:
  Dual-region radiomics signature: Integrating primary tumor and lymph node computed tomography features improves survival prediction in esophageal squamous cell cancer. 106287

Section IV: Classification and interpretation

• 
  Federico Cabitza, Andrea Campagner, Felipe Soares, Luis García de Guadiana-Romualdo, Feyissa Challa, Adela Sulejmani, Michela Seghezzi, Anna Carobene:
  The importance of being external. methodological insights for the external validation of machine learning models in medicine. 106288

Section III: Modelling & Simulation

• 
  Xiangpeng Bi, Shugang Zhang, Huasen Jiang, Zhiqiang Wei:
  A Multi-Scale Computational Model for the Rat Ventricle: Construction, Parallelization, and Applications. 106289

Section IV: Classification and interpretation

• 
  Xue Feng, Su Pan, Molei Yan, Yanfei Shen, Xiaoqing Liu, Guolong Cai, Gangmin Ning:
  Dynamic prediction of late noninvasive ventilation failure in intensive care unit using a time adaptive machine model. 106290

Section II: Biomedical signal and image processing methods

• 
  Jeremias M. Gomes, Jun Kong, Tahsin M. Kurç, Alba C. M. A. Melo, Renato Ferreira, Joel H. Saltz, George Teodoro:
  Building robust pathology image analyses with uncertainty quantification. 106291

Section IV: Classification and interpretation

• 
  Qingguang Chen, Junchao Huang, Hassan S. Salehi, Haihua Zhu, Luya Lian, Xiaomin Lai, Kaihua Wei:
  Hierarchical CNN-based occlusal surface morphology analysis for classifying posterior tooth type using augmented images from 3D dental surface models. 106295

Section III: Modelling & Simulation

• 
  Minhye Jo, Soo-Won Chae:
  Stress analysis of intervertebral disc during occupational activities. 106298
• 
  Yukai Feng, Jingheng Shu, Yang Liu, Tinghui Zheng, Bingmei Shao, Zhan Liu:
  Biomechanical analysis of temporomandibular joints during mandibular protrusion and retraction motions: A 3d finite element simulation. 106299
• 
  Jennifer L. Knopp, J. Geoffrey Chase, Kyeong Tae Kim, Geoffrey M. Shaw:
  Model-based estimation of negative inspiratory driving pressure in patients receiving invasive NAVA mechanical ventilation. 106300
• 
  Allard W. Olthof, P. Shouche, E. M. Fennema, F. F. A. IJpma, R. H. C. Koolstra, V. M. A. Stirler, Peter M. A. van Ooijen, Ludo J. Cornelissen:
  Machine learning based natural language processing of radiology reports in orthopaedic trauma. 106304