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ORCIDGhassan Hamarneh
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- affiliation: Simon Fraser University, Burnaby, Canada
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2020 – today
- 2024
[j80]Weina Jin
, Mostafa Fatehi, Ru Guo, Ghassan Hamarneh:
Evaluating the clinical utility of artificial intelligence assistance and its explanation on the glioma grading task. Artif. Intell. Medicine 148: 102751 (2024)- [j79]Hanene Ben Yedder, Ben Cardoen, Majid Shokoufi, Farid Golnaraghi, Ghassan Hamarneh:
Deep orthogonal multi-wavelength fusion for tomogram-free diagnosis in diffuse optical imaging. Comput. Biol. Medicine 178: 108676 (2024) - [j78]Kumar Abhishek, Colin J. Brown, Ghassan Hamarneh:
Multi-sample ζ-mixup: richer, more realistic synthetic samples from a p-series interpolant. J. Big Data 11(1): 43 (2024) - [j77]Ashish Sinha, Jeremy Kawahara, Arezou Pakzad, Kumar Abhishek, Matthieu Ruthven, Enjie Ghorbel, Anis Kacem, Djamila Aouada, Ghassan Hamarneh:
DermSynth3D: Synthesis of in-the-wild annotated dermatology images. Medical Image Anal. 95: 103145 (2024) - [j76]Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi:
GC2: Generalizable Continual Classification of Medical Images. IEEE Trans. Medical Imaging 43(11): 3767-3779 (2024) - [c161]Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi:
Continual-Zoo: Leveraging Zoo Models for Continual Classification of Medical Images. CVPR Workshops 2024: 4128-4138 - [c160]Adriano C. D'Alessandro, Ali Mahdavi-Amiri, Ghassan Hamarneh:
AFreeCA: Annotation-Free Counting for All. ECCV (4) 2024: 75-91 - [c159]Aliasghar Khani, Saeid Asgari Taghanaki, Aditya Sanghi, Ali Mahdavi-Amiri, Ghassan Hamarneh:
SLiMe: Segment Like Me. ICLR 2024 - [c158]Nourhan Bayasi, Jamil Fayyad, Alceu Bissoto, Ghassan Hamarneh, Rafeef Garbi:
BiasPruner: Debiased Continual Learning for Medical Image Classification. MICCAI (10) 2024: 90-101 - [c157]Ashish Sinha, Ghassan Hamarneh:
TrIND: Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields. MICCAI (12) 2024: 344-354 - [i61]Kumar Abhishek, Aditi Jain, Ghassan Hamarneh:
Investigating the Quality of DermaMNIST and Fitzpatrick17k Dermatological Image Datasets. CoRR abs/2401.14497 (2024) - [i60]Adriano C. D'Alessandro, Ali Mahdavi-Amiri, Ghassan Hamarneh:
AFreeCA: Annotation-Free Counting for All. CoRR abs/2403.04943 (2024) - [i59]Ashish Sinha, Ghassan Hamarneh:
Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields. CoRR abs/2403.08974 (2024) - [i58]Nourhan Bayasi, Jamil Fayyad, Alceu Bissoto, Ghassan Hamarneh, Rafeef Garbi:
BiasPruner: Debiased Continual Learning for Medical Image Classification. CoRR abs/2407.08609 (2024) - [i57]Kumar Abhishek, Jeremy Kawahara, Ghassan Hamarneh:
Segmentation Style Discovery: Application to Skin Lesion Images. CoRR abs/2408.02787 (2024) - [i56]Kumar Abhishek, Ghassan Hamarneh:
Lesion Elevation Prediction from Skin Images Improves Diagnosis. CoRR abs/2408.02792 (2024) - [i55]Amirhossein Alimohammadi, Sauradip Nag, Saeid Asgari Taghanaki, Andrea Tagliasacchi, Ghassan Hamarneh, Ali Mahdavi-Amiri:
SMITE: Segment Me In TimE. CoRR abs/2410.18538 (2024) - [i54]Nourhan Bayasi, Jamil Fayyad, Ghassan Hamarneh, Rafeef Garbi, Homayoun Najjaran:
Debiasify: Self-Distillation for Unsupervised Bias Mitigation. CoRR abs/2411.00711 (2024) - [i53]Tanya Gatsak, Kumar Abhishek, Hanene Ben Yedder, Saeid Asgari Taghanaki, Ghassan Hamarneh:
Disentangled PET Lesion Segmentation. CoRR abs/2411.01758 (2024) - 2023
- [j75]Saeed Izadi, Darren B. Sutton, Ghassan Hamarneh:
Image denoising in the deep learning era. Artif. Intell. Rev. 56(7): 5929-5974 (2023) - [j74]Shubam Sachdeva, Haoyao Ruan, Ghassan Hamarneh, Dawn M. Behne, Allard Jongman, Joan A. Sereno, Yue Wang:
Plain-to-clear speech video conversion for enhanced intelligibility. Int. J. Speech Technol. 26(1): 163-184 (2023) - [j73]Saurabh Garg, Haoyao Ruan, Ghassan Hamarneh, Dawn M. Behne, Allard Jongman, Joan A. Sereno, Yue Wang:
Mouth2Audio: intelligible audio synthesis from videos with distinctive vowel articulation. Int. J. Speech Technol. 26(on): 459-474 (2023) - [j72]Weina Jin, Xiaoxiao Li, Mostafa Fatehi, Ghassan Hamarneh:
Guidelines and evaluation of clinical explainable AI in medical image analysis. Medical Image Anal. 84: 102684 (2023) - [j71]Zahra Mirikharaji, Kumar Abhishek, Alceu Bissoto, Catarina Barata, Sandra Avila, Eduardo Valle, M. Emre Celebi, Ghassan Hamarneh:
A survey on deep learning for skin lesion segmentation. Medical Image Anal. 88: 102863 (2023) - [c156]Adriano C. D'Alessandro, Ali Mahdavi-Amiri, Ghassan Hamarneh:
Learning-to-Count by Learning-to-Rank. CRV 2023: 105-112 - [c155]Nourhan Bayasi, Siyi Du, Ghassan Hamarneh, Rafeef Garbi:
Continual-GEN: Continual Group Ensembling for Domain-agnostic Skin Lesion Classification. ISIC/Care-AI/MedAGI/DeCaF@MICCAI 2023: 3-13 - [c154]Siyi Du, Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi:
AViT: Adapting Vision Transformers for Small Skin Lesion Segmentation Datasets. ISIC/Care-AI/MedAGI/DeCaF@MICCAI 2023: 25-36 - [c153]Siyi Du, Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi:
MDViT: Multi-domain Vision Transformer for Small Medical Image Segmentation Datasets. MICCAI (4) 2023: 448-458 - [d1]Ben Cardoen, Hanene Ben Yedder, Sieun Lee, Ivan Robert Nabi, Ghassan Hamarneh:
LogParadox. Zenodo, 2023
- [i52]Weina Jin, Jianyu Fan, Diane Gromala, Philippe Pasquier, Ghassan Hamarneh:
Invisible Users: Uncovering End-Users' Requirements for Explainable AI via Explanation Forms and Goals. CoRR abs/2302.06609 (2023) - [i51]Weina Jin, Xiaoxiao Li, Ghassan Hamarneh:
Rethinking AI Explainability and Plausibility. CoRR abs/2303.17707 (2023) - [i50]Ashish Sinha, Jeremy Kawahara, Arezou Pakzad, Kumar Abhishek, Matthieu Ruthven, Enjie Ghorbel, Anis Kacem, Djamila Aouada, Ghassan Hamarneh:
DermSynth3D: Synthesis of in-the-wild Annotated Dermatology Images. CoRR abs/2305.12621 (2023) - [i49]Ivan Robert Nabi, Ben Cardoen, Ismail M. Khater, Guang Gao, Timothy H. Wong, Ghassan Hamarneh:
AI-based analysis of super-resolution microscopy: Biological discovery in the absence of ground truth. CoRR abs/2305.17193 (2023) - [i48]Siyi Du, Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi:
MDViT: Multi-domain Vision Transformer for Small Medical Image Segmentation Datasets. CoRR abs/2307.02100 (2023) - [i47]Siyi Du, Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi:
AViT: Adapting Vision Transformers for Small Skin Lesion Segmentation Datasets. CoRR abs/2307.13897 (2023) - [i46]Aliasghar Khani, Saeid Asgari Taghanaki, Aditya Sanghi, Ali Mahdavi-Amiri, Ghassan Hamarneh:
SLiMe: Segment Like Me. CoRR abs/2309.03179 (2023) - [i45]Adriano C. D'Alessandro, Ali Mahdavi-Amiri, Ghassan Hamarneh:
SYRAC: Synthesize, Rank, and Count. CoRR abs/2310.01662 (2023) - 2022
- [j70]Mohammad Arafat Hussain, Zahra Mirikharaji, Mohammad Momeny, Mahmoud Marhamati, Ali Asghar Neshat, Rafeef Garbi, Ghassan Hamarneh:
Active deep learning from a noisy teacher for semi-supervised 3D image segmentation: Application to COVID-19 pneumonia infection in CT. Comput. Medical Imaging Graph. 102: 102127 (2022) - [j69]Ivan S. Klyuzhin, Yixi Xu, Anthony Ortiz, Juan Lavista Ferres, Ghassan Hamarneh, Arman Rahmim:
Testing the Ability of Convolutional Neural Networks to Learn Radiomic Features. Comput. Methods Programs Biomed. 219: 106750 (2022) - [j68]Mengliu Zhao, Jeremy Kawahara, Kumar Abhishek, Sajjad Shamanian, Ghassan Hamarneh:
Skin3D: Detection and longitudinal tracking of pigmented skin lesions in 3D total-body textured meshes. Medical Image Anal. 77: 102329 (2022) - [j67]Hanene Ben Yedder, Ben Cardoen, Majid Shokoufi, Farid Golnaraghi, Ghassan Hamarneh:
Multitask Deep Learning Reconstruction and Localization of Lesions in Limited Angle Diffuse Optical Tomography. IEEE Trans. Medical Imaging 41(3): 515-530 (2022) - [j66]M. Sadegh Saberian, Kathleen P. Moriarty, Andrea D. Olmstead, Christian Hallgrimson, François Jean, Ivan Robert Nabi, Maxwell W. Libbrecht, Ghassan Hamarneh:
DEEMD: Drug Efficacy Estimation Against SARS-CoV-2 Based on Cell Morphology With Deep Multiple Instance Learning. IEEE Trans. Medical Imaging 41(11): 3128-3145 (2022) - [c152]Weina Jin, Xiaoxiao Li, Ghassan Hamarneh:
Evaluating Explainable AI on a Multi-Modal Medical Imaging Task: Can Existing Algorithms Fulfill Clinical Requirements? AAAI 2022: 11945-11953 - [c151]Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi:
BoosterNet: Improving Domain Generalization of Deep Neural Nets using Culpability-Ranked Features. CVPR 2022: 528-538 - [c150]Siyi Du, Ben Hers, Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi:
FairDisCo: Fairer AI in Dermatology via Disentanglement Contrastive Learning. ECCV Workshops (4) 2022: 185-202 - [c149]Arezou Pakzad, Kumar Abhishek, Ghassan Hamarneh:
CIRCLe: Color Invariant Representation Learning for Unbiased Classification of Skin Lesions. ECCV Workshops (4) 2022: 203-219 - [c148]Mayur Mallya, Ghassan Hamarneh:
Deep Multimodal Guidance for Medical Image Classification. MICCAI (8) 2022: 298-308 - [c147]Saeid Asgari Taghanaki, Aliasghar Khani, Fereshte Khani, Ali Gholami, Linh Tran, Ali Mahdavi-Amiri, Ghassan Hamarneh:
MaskTune: Mitigating Spurious Correlations by Forcing to Explore. NeurIPS 2022 - [i44]Weina Jin, Xiaoxiao Li, Mostafa Fatehi, Ghassan Hamarneh:
Guidelines and evaluation for clinical explainable AI on medical image analysis. CoRR abs/2202.10553 (2022) - [i43]Mayur Mallya, Ghassan Hamarneh:
Deep Multimodal Guidance for Medical Image Classification. CoRR abs/2203.05683 (2022) - [i42]Weina Jin, Xiaoxiao Li, Ghassan Hamarneh:
Evaluating Explainable AI on a Multi-Modal Medical Imaging Task: Can Existing Algorithms Fulfill Clinical Requirements? CoRR abs/2203.06487 (2022) - [i41]Kumar Abhishek, Colin J. Brown, Ghassan Hamarneh:
Multi-Sample ζ-mixup: Richer, More Realistic Synthetic Samples from a p-Series Interpolant. CoRR abs/2204.03323 (2022) - [i40]Zahra Mirikharaji, Catarina Barata, Kumar Abhishek, Alceu Bissoto, Sandra Avila, Eduardo Valle, M. Emre Celebi, Ghassan Hamarneh:
A Survey on Deep Learning for Skin Lesion Segmentation. CoRR abs/2206.00356 (2022) - [i39]Weina Jin, Jianyu Fan, Diane Gromala, Philippe Pasquier, Xiaoxiao Li, Ghassan Hamarneh:
Transcending XAI Algorithm Boundaries through End-User-Inspired Design. CoRR abs/2208.08739 (2022) - [i38]Siyi Du, Ben Hers, Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi:
FairDisCo: Fairer AI in Dermatology via Disentanglement Contrastive Learning. CoRR abs/2208.10013 (2022) - [i37]Arezou Pakzad, Kumar Abhishek, Ghassan Hamarneh:
CIRCLe: Color Invariant Representation Learning for Unbiased Classification of Skin Lesions. CoRR abs/2208.13528 (2022) - [i36]Saeid Asgari Taghanaki, Aliasghar Khani, Fereshte Khani, Ali Gholami, Linh Tran, Ali Mahdavi-Amiri, Ghassan Hamarneh:
MaskTune: Mitigating Spurious Correlations by Forcing to Explore. CoRR abs/2210.00055 (2022) - 2021
- [j65]Saeid Asgari Taghanaki, Kumar Abhishek, Joseph Paul Cohen, Julien Cohen-Adad, Ghassan Hamarneh:
Deep semantic segmentation of natural and medical images: a review. Artif. Intell. Rev. 54(1): 137-178 (2021) - [j64]Hanene Ben Yedder, Ben Cardoen, Ghassan Hamarneh:
Deep learning for biomedical image reconstruction: a survey. Artif. Intell. Rev. 54(1): 215-251 (2021) - [j63]Mohammad Momeny, Ali Asghar Neshat, Mohammad Arafat Hussain, Solmaz Kia, Mahmoud Marhamati, Ahmad Jahanbakhshi, Ghassan Hamarneh:
Learning-to-augment strategy using noisy and denoised data: Improving generalizability of deep CNN for the detection of COVID-19 in X-ray images. Comput. Biol. Medicine 136: 104704 (2021) - [j62]Mohammad Arafat Hussain, Ghassan Hamarneh, Rafeef Garbi:
Learnable image histograms-based deep radiomics for renal cell carcinoma grading and staging. Comput. Medical Imaging Graph. 90: 101924 (2021) - [j61]Mohammad Arafat Hussain, Ghassan Hamarneh, Rafeef Garbi:
Cascaded Regression Neural Nets for Kidney Localization and Segmentation-free Volume Estimation. IEEE Trans. Medical Imaging 40(6): 1555-1567 (2021) - [c146]Zahra Mirikharaji, Kumar Abhishek, Saeed Izadi, Ghassan Hamarneh:
D-LEMA: Deep Learning Ensembles From Multiple Annotations - Application to Skin Lesion Segmentation. CVPR Workshops 2021: 1837-1846 - [c145]Kumar Abhishek, Ghassan Hamarneh:
Matthews Correlation Coefficient Loss For Deep Convolutional Networks: Application To Skin Lesion Segmentation. ISBI 2021: 225-229 - [c144]Nourhan Bayasi, Ghassan Hamarneh, Rafeef Garbi:
Culprit-Prune-Net: Efficient Continual Sequential Multi-domain Learning with Application to Skin Lesion Classification. MICCAI (7) 2021: 165-175 - [p2]Saeed Izadi, Ghassan Hamarneh:
AECNN: Adversarial and Enhanced Convolutional Neural Networks. Computer-Aided Analysis of Gastrointestinal Videos 2021: 59-62 - [i35]Weina Jin, Jianyu Fan, Diane Gromala, Philippe Pasquier, Ghassan Hamarneh:
EUCA: A Practical Prototyping Framework towards End-User-Centered Explainable Artificial Intelligence. CoRR abs/2102.02437 (2021) - [i34]Mengliu Zhao, Jeremy Kawahara, Sajjad Shamanian, Kumar Abhishek, Priyanka Chandrashekar, Ghassan Hamarneh:
Detection and Longitudinal Tracking of Pigmented Skin Lesions in 3D Total-Body Skin Textured Meshes. CoRR abs/2105.00374 (2021) - [i33]M. Sadegh Saberian, Kathleen P. Moriarty, Andrea D. Olmstead, Ivan Robert Nabi, François Jean, Maxwell W. Libbrecht, Ghassan Hamarneh:
DEEMD: Drug Efficacy Estimation against SARS-CoV-2 based on cell Morphology with Deep multiple instance learning. CoRR abs/2105.05758 (2021) - [i32]Weina Jin, Xiaoxiao Li, Ghassan Hamarneh:
One Map Does Not Fit All: Evaluating Saliency Map Explanation on Multi-Modal Medical Images. CoRR abs/2107.05047 (2021) - 2020
- [j60]Ismail M. Khater, Ivan Robert Nabi, Ghassan Hamarneh:
A Review of Super-Resolution Single-Molecule Localization Microscopy Cluster Analysis and Quantification Methods. Patterns 1(3): 100038 (2020) - [j59]Anmol Sharma, Ghassan Hamarneh:
Missing MRI Pulse Sequence Synthesis Using Multi-Modal Generative Adversarial Network. IEEE Trans. Medical Imaging 39(4): 1170-1183 (2020) - [j58]Ben Cardoen, Hanene Ben Yedder, Anmol Sharma, Keng C. Chou, Ivan Robert Nabi, Ghassan Hamarneh:
ERGO: Efficient Recurrent Graph Optimized Emitter Density Estimation in Single Molecule Localization Microscopy. IEEE Trans. Medical Imaging 39(6): 1942-1956 (2020) - [c143]Kumar Abhishek, Ghassan Hamarneh, Mark S. Drew:
Illumination-based Transformations Improve Skin Lesion Segmentation in Dermoscopic Images. CVPR Workshops 2020: 3132-3141 - [c142]Shahab Aslani, Vittorio Murino, Michael Dayan, Roger C. Tam, Diego Sona, Ghassan Hamarneh:
Scanner Invariant Multiple Sclerosis Lesion Segmentation from MRI. ISBI 2020: 781-785 - [c141]Saeed Izadi, Ghassan Hamarneh:
Patch-Based Non-local Bayesian Networks for Blind Confocal Microscopy Denoising. MICCAI (5) 2020: 46-55 - [i31]Hanene Ben Yedder, Ben Cardoen, Ghassan Hamarneh:
Deep Learning for Biomedical Image Reconstruction: A Survey. CoRR abs/2002.12351 (2020) - [i30]Kumar Abhishek, Ghassan Hamarneh, Mark S. Drew:
Illumination-based Transformations Improve Skin Lesion Segmentation in Dermoscopic Images. CoRR abs/2003.10111 (2020) - [i29]Saeed Izadi, Ghassan Hamarneh:
Patch-based Non-Local Bayesian Networks for Blind Confocal Microscopy Denoising. CoRR abs/2003.11177 (2020) - [i28]Kumar Abhishek, Ghassan Hamarneh:
Matthews Correlation Coefficient Loss for Deep Convolutional Networks: Application to Skin Lesion Segmentation. CoRR abs/2010.13454 (2020) - [i27]Zahra Mirikharaji, Kumar Abhishek, Saeed Izadi, Ghassan Hamarneh:
D-LEMA: Deep Learning Ensembles from Multiple Annotations - Application to Skin Lesion Segmentation. CoRR abs/2012.07206 (2020)
2010 – 2019
- 2019
- [j57]Ismail M. Khater, Fanrui Meng, Ivan Robert Nabi, Ghassan Hamarneh:
Identification of caveolin-1 domain signatures via machine learning and graphlet analysis of single-molecule super-resolution data. Bioinform. 35(18): 3468-3475 (2019) - [j56]Colin J. Brown, Steven P. Miller, Brian G. Booth, Jill G. Zwicker, Ruth E. Grunau, Anne R. Synnes, Vann Chau, Ghassan Hamarneh:
Predictive connectome subnetwork extraction with anatomical and connectivity priors. Comput. Medical Imaging Graph. 71: 67-78 (2019) - [j55]Li Wang, Yinghuan Shi, Heung-Il Suk, J. Alison Noble, Ghassan Hamarneh:
Special issue on machine learning in medical imaging. Comput. Medical Imaging Graph. 74: 10-11 (2019) - [j54]Saeid Asgari Taghanaki, Yefeng Zheng, Shaohua Kevin Zhou, Bogdan Georgescu, Puneet Sharma, Daguang Xu, Dorin Comaniciu, Ghassan Hamarneh:
Combo loss: Handling input and output imbalance in multi-organ segmentation. Comput. Medical Imaging Graph. 75: 24-33 (2019) - [j53]Saurabh Garg, Ghassan Hamarneh, Allard Jongman, Joan A. Sereno, Yue Wang:
Computer-vision analysis reveals facial movements made during Mandarin tone production align with pitch trajectories. Speech Commun. 113: 47-62 (2019) - [j52]Jeremy Kawahara, Sara Daneshvar, Giuseppe Argenziano, Ghassan Hamarneh:
Seven-Point Checklist and Skin Lesion Classification Using Multitask Multimodal Neural Nets. IEEE J. Biomed. Health Informatics 23(2): 538-546 (2019) - [j51]Jeremy Kawahara, Ghassan Hamarneh:
Fully Convolutional Neural Networks to Detect Clinical Dermoscopic Features. IEEE J. Biomed. Health Informatics 23(2): 578-585 (2019) - [c140]Saeid Asgari Taghanaki, Kumar Abhishek, Shekoofeh Azizi, Ghassan Hamarneh:
A Kernelized Manifold Mapping to Diminish the Effect of Adversarial Perturbations. CVPR 2019: 11340-11349 - [c139]Mengliu Zhao, Ghassan Hamarneh:
Retinal Image Classification via Vasculature-Guided Sequential Attention. ICCV Workshops 2019: 381-387 - [c138]Saeed Izadi, Zahra Mirikharaji, Mengliu Zhao, Ghassan Hamarneh:
WhiteNNer-Blind Image Denoising via Noise Whiteness Priors. ICCV Workshops 2019: 476-484 - [c137]Yiqi Yan, Jeremy Kawahara, Ghassan Hamarneh:
Melanoma Recognition via Visual Attention. IPMI 2019: 793-804 - [c136]Hanene Ben Yedder, Majid Shokoufi, Ben Cardoen, Farid Golnaraghi, Ghassan Hamarneh:
Limited-Angle Diffuse Optical Tomography Image Reconstruction Using Deep Learning. MICCAI (1) 2019: 66-74 - [c135]Kumar Abhishek, Ghassan Hamarneh:
Mask2Lesion: Mask-Constrained Adversarial Skin Lesion Image Synthesis. SASHIMI@MICCAI 2019: 71-80 - [c134]Mohammad Arafat Hussain, Ghassan Hamarneh, Rafeef Garbi:
ImHistNet: Learnable Image Histogram Based DNN with Application to Noninvasive Determination of Carcinoma Grades in CT Scans. MICCAI (6) 2019: 130-138 - [c133]Zahra Mirikharaji, Yiqi Yan, Ghassan Hamarneh:
Learning to Segment Skin Lesions from Noisy Annotations. DART/MIL3ID@MICCAI 2019: 207-215 - [c132]Saeed Izadi, Darren B. Sutton, Ghassan Hamarneh:
Image Super Resolution via Bilinear Pooling: Application to Confocal Endomicroscopy. MLMIR@MICCAI 2019: 236-244 - [c131]Chris Yoon, Ghassan Hamarneh, Rafeef Garbi:
Generalizable Feature Learning in the Presence of Data Bias and Domain Class Imbalance with Application to Skin Lesion Classification. MICCAI (4) 2019: 365-373 - [c130]Saeid Asgari Taghanaki, Aïcha BenTaieb, Anmol Sharma, Shaohua Kevin Zhou, Yefeng Zheng, Bogdan Georgescu, Puneet Sharma, Zhoubing Xu, Dorin Comaniciu, Ghassan Hamarneh:
Select, Attend, and Transfer: Light, Learnable Skip Connections. MLMI@MICCAI 2019: 417-425 - [c129]Mohammad Arafat Hussain, Ghassan Hamarneh, Rafeef Garbi:
Renal Cell Carcinoma Staging with Learnable Image Histogram-Based Deep Neural Network. MLMI@MICCAI 2019: 533-540 - [c128]Mengliu Zhao, Ghassan Hamarneh:
Tree-LSTM: Using LSTM to Encode Memory in Anatomical Tree Prediction from 3D Images. MLMI@MICCAI 2019: 637-645 - [c127]Saeid Asgari Taghanaki, Mohammad Havaei, Tess Berthier, Francis Dutil, Lisa Di-Jorio, Ghassan Hamarneh, Yoshua Bengio:
InfoMask: Masked Variational Latent Representation to Localize Chest Disease. MICCAI (6) 2019: 739-747 - [c126]Saeid Asgari Taghanaki, Kumar Abhishek, Ghassan Hamarneh:
Improved Inference via Deep Input Transfer. MICCAI (6) 2019: 819-827 - [c125]Saeedeh Afshari, Aïcha BenTaieb, Zahra Mirikharaji, Ghassan Hamarneh:
Weakly supervised fully convolutional network for PET lesion segmentation. Image Processing 2019: 109491K - [i26]Saeid Asgari Taghanaki, Kumar Abhishek, Shekoofeh Azizi, Ghassan Hamarneh:
A Kernelized Manifold Mapping to Diminish the Effect of Adversarial Perturbations. CoRR abs/1903.01015 (2019) - [i25]Saeid Asgari Taghanaki, Mohammad Havaei, Tess Berthier, Francis Dutil, Lisa Di-Jorio, Ghassan Hamarneh, Yoshua Bengio:
InfoMask: Masked Variational Latent Representation to Localize Chest Disease. CoRR abs/1903.11741 (2019) - [i24]Saeid Asgari Taghanaki, Kumar Abhishek, Ghassan Hamarneh:
Improved Inference via Deep Input Transfer. CoRR abs/1904.02307 (2019) - [i23]Anmol Sharma, Ghassan Hamarneh:
Missing MRI Pulse Sequence Synthesis using Multi-Modal Generative Adversarial Network. CoRR abs/1904.12200 (2019) - [i22]Jeremy Kawahara, Ghassan Hamarneh:
Visual Diagnosis of Dermatological Disorders: Human and Machine Performance. CoRR abs/1906.01256 (2019) - [i21]Zahra Mirikharaji, Yiqi Yan, Ghassan Hamarneh:
Learning to Segment Skin Lesions from Noisy Annotations. CoRR abs/1906.03815 (2019) - [i20]Kumar Abhishek, Ghassan Hamarneh:
Mask2Lesion: Mask-Constrained Adversarial Skin Lesion Image Synthesis. CoRR abs/1906.05845 (2019) - [i19]Saeed Izadi, Darren B. Sutton, Ghassan Hamarneh:
Image Super Resolution via Bilinear Pooling: Application to Confocal Endomicroscopy. CoRR abs/1906.07802 (2019) - [i18]Saeed Izadi, Zahra Mirikharaji, Mengliu Zhao, Ghassan Hamarneh:
WhiteNNer-Blind Image Denoising via Noise Whiteness Priors. CoRR abs/1908.03238 (2019) - [i17]Saeid Asgari Taghanaki, Kumar Abhishek, Joseph Paul Cohen, Julien Cohen-Adad, Ghassan Hamarneh:
Deep Semantic Segmentation of Natural and Medical Images: A Review. CoRR abs/1910.07655 (2019) - [i16]Shahab Aslani, Vittorio Murino, Michael Dayan, Roger C. Tam, Diego Sona, Ghassan Hamarneh:
Scanner Invariant Multiple Sclerosis Lesion Segmentation from MRI. CoRR abs/1910.10035 (2019) - [i15]Aïcha BenTaieb, Ghassan Hamarneh:
Deep Learning Models for Digital Pathology. CoRR abs/1910.12329 (2019) - [i14]Saeid Asgari Taghanaki, Kumar Abhishek, Ghassan Hamarneh:
Signed Input Regularization. CoRR abs/1911.07086 (2019) - [i13]Weina Jin, Mostafa Fatehi, Kumar Abhishek, Mayur Mallya, Brian Toyota, Ghassan Hamarneh:
Applying Artificial Intelligence to Glioma Imaging: Advances and Challenges. CoRR abs/1911.12886 (2019) - 2018
- [j50]Saeid Asgari Taghanaki, Nóirín Duggan, Hillgan Ma, Xinchi Hou, Anna Celler, François Bénard, Ghassan Hamarneh:
Segmentation-free direct tumor volume and metabolic activity estimation from PET scans. Comput. Medical Imaging Graph. 63: 52-66 (2018) - [j49]Saeedeh Afshari, Aïcha BenTaieb, Ghassan Hamarneh:
Automatic localization of normal active organs in 3D PET scans. Comput. Medical Imaging Graph. 70: 111-118 (2018) - [j48]Peyman Gholami, Mohammad Ali Ahmadi-Pajouh, Nabiollah Abolftahi, Ghassan Hamarneh, Mohammad Kayvanrad:
Segmentation and Measurement of Chronic Wounds for Bioprinting. IEEE J. Biomed. Health Informatics 22(4): 1269-1277 (2018) - [j47]Aïcha BenTaieb, Ghassan Hamarneh:
Adversarial Stain Transfer for Histopathology Image Analysis. IEEE Trans. Medical Imaging 37(3): 792-802 (2018) - [c124]Saurabh Garg, Ghassan Hamarneh, Allard Jongman, Joan A. Sereno, Yue Wang:
Joint Gender-, Tone-, Vowel- Classification Via Novel Hierarchical Classification for Annotation of Monosyllabic Mandarin Word Tokens. ICASSP 2018: 5744-5748 - [c123]Colin J. Brown, Jeremy Kawahara, Ghassan Hamarneh:
Connectome priors in deep neural networks to predict autism. ISBI 2018: 110-113 - [c122]Zahra Mirikharaji, Saeed Izadi, Jeremy Kawahara, Ghassan Hamarneh:
Deep auto-context fully convolutional neural network for skin lesion segmentation. ISBI 2018: 877-880 - [c121]Saeed Izadi, Zahra Mirikharaji, Jeremy Kawahara, Ghassan Hamarneh:
Generative adversarial networks to segment skin lesions. ISBI 2018: 881-884 - [c120]Mengliu Zhao, Ghassan Hamarneh:
TreeNet: Multi-loss Deep Learning Network to Predict Branch Direction for Extracting 3D Anatomical Trees. DLMIA/ML-CDS@MICCAI 2018: 47-55 - [c119]Saeed Izadi, Kathleen P. Moriarty, Ghassan Hamarneh:
Can Deep Learning Relax Endomicroscopy Hardware Miniaturization Requirements? MICCAI (1) 2018: 57-64 - [c118]Saeid Asgari Taghanaki, Arkadeep Das, Ghassan Hamarneh:
Vulnerability Analysis of Chest X-Ray Image Classification Against Adversarial Attacks. MLCN/DLF/iMIMIC@MICCAI 2018: 87-94 - [c117]Hanene Ben Yedder, Aïcha BenTaieb, Majid Shokoufi, Amir Zahiremami, Farid Golnaraghi, Ghassan Hamarneh:
Deep Learning Based Image Reconstruction for Diffuse Optical Tomography. MLMIR@MICCAI 2018: 112-119 - [c116]Aïcha BenTaieb, Ghassan Hamarneh:
Predicting Cancer with a Recurrent Visual Attention Model for Histopathology Images. MICCAI (2) 2018: 129-137 - [c115]Mohammad Arafat Hussain, Ghassan Hamarneh, Rafeef Garbi:
Noninvasive Determination of Gene Mutations in Clear Cell Renal Cell Carcinoma Using Multiple Instance Decisions Aggregated CNN. MICCAI (2) 2018: 657-665 - [c114]Zahra Mirikharaji, Ghassan Hamarneh:
Star Shape Prior in Fully Convolutional Networks for Skin Lesion Segmentation. MICCAI (4) 2018: 737-745 - [i12]Saeid Asgari Taghanaki, Aïcha BenTaieb, Anmol Sharma, Shaohua Kevin Zhou, Yefeng Zheng, Bogdan Georgescu, Puneet Sharma, Sasa Grbic, Zhoubing Xu, Dorin Comaniciu, Ghassan Hamarneh:
Select, Attend, and Transfer: Light, Learnable Skip Connections. CoRR abs/1804.05181 (2018) - [i11]Saeid Asgari Taghanaki, Yefeng Zheng, Shaohua Kevin Zhou, Bogdan Georgescu, Puneet Sharma, Daguang Xu, Dorin Comaniciu, Ghassan Hamarneh:
Combo Loss: Handling Input and Output Imbalance in Multi-Organ Segmentation. CoRR abs/1805.02798 (2018) - [i10]Saeed Izadi, Kathleen P. Moriarty, Ghassan Hamarneh:
Can Deep Learning Relax Endomicroscopy Hardware Miniaturization Requirements? CoRR abs/1806.08338 (2018) - [i9]Zahra Mirikharaji, Ghassan Hamarneh:
Star Shape Prior in Fully Convolutional Networks for Skin Lesion Segmentation. CoRR abs/1806.08437 (2018) - [i8]Saeid Asgari Taghanaki, Arkadeep Das, Ghassan Hamarneh:
Vulnerability Analysis of Chest X-Ray Image Classification Against Adversarial Attacks. CoRR abs/1807.02905 (2018) - 2017
- [j46]Saeid Asgari Taghanaki, Jeremy Kawahara, Brandon Miles, Ghassan Hamarneh:
Pareto-optimal multi-objective dimensionality reduction deep auto-encoder for mammography classification. Comput. Methods Programs Biomed. 145: 85-93 (2017) - [j45]Aïcha BenTaieb, Hector Li-Chang, David G. Huntsman, Ghassan Hamarneh:
A structured latent model for ovarian carcinoma subtyping from histopathology slides. Medical Image Anal. 39: 194-205 (2017) - [j44]Alborz Amir-Khalili, Ghassan Hamarneh, Rafeef Abugharbieh:
Modelling and extraction of pulsatile radial distension and compression motion for automatic vessel segmentation from video. Medical Image Anal. 40: 184-198 (2017) - [j43]Jeremy Kawahara, Colin J. Brown, Steven P. Miller, Brian G. Booth, Vann Chau, Ruth E. Grunau, Jill G. Zwicker, Ghassan Hamarneh:
BrainNetCNN: Convolutional neural networks for brain networks; towards predicting neurodevelopment. NeuroImage 146: 1038-1049 (2017) - [j42]Saeid Asgari Taghanaki, Yonghuai Liu, Brandon Miles, Ghassan Hamarneh:
Geometry-Based Pectoral Muscle Segmentation From MLO Mammogram Views. IEEE Trans. Biomed. Eng. 64(11): 2662-2671 (2017) - [j41]Zhi Lu, Gustavo Carneiro, Andrew P. Bradley, Daniela Ushizima, Masoud S. Nosrati, Andrea G. C. Bianchi, Cláudia M. Carneiro, Ghassan Hamarneh:
Evaluation of Three Algorithms for the Segmentation of Overlapping Cervical Cells. IEEE J. Biomed. Health Informatics 21(2): 441-450 (2017) - [c113]Mengliu Zhao, Ghassan Hamarneh:
Bifurcation Localization in 3D Images via Evolutionary Geometric Deformable Templates. CRV 2017: 124-130 - [c112]Mengliu Zhao, Brandon Miles, Ghassan Hamarneh:
Leveraging Tree Statistics for Extracting Anatomical Trees from 3D Medical Images. CRV 2017: 131-138 - [c111]Jeremy Kawahara, Kathleen P. Moriarty, Ghassan Hamarneh:
Graph Geodesics to Find Progressively Similar Skin Lesion Images. GRAIL/MFCA/MICGen@MICCAI 2017: 31-41 - [c110]Colin J. Brown, Kathleen P. Moriarty, Steven P. Miller, Brian G. Booth, Jill G. Zwicker, Ruth E. Grunau, Anne R. Synnes, Vann Chau, Ghassan Hamarneh:
Prediction of Brain Network Age and Factors of Delayed Maturation in Very Preterm Infants. MICCAI (1) 2017: 84-91 - [c109]Mian Huang, Ghassan Hamarneh:
SwifTree: Interactive Extraction of 3D Trees Supporting Gaming and Crowdsourcing. CVII-STENT/LABELS@MICCAI 2017: 116-125 - [c108]Aïcha BenTaieb, Ghassan Hamarneh:
Uncertainty Driven Multi-loss Fully Convolutional Networks for Histopathology. CVII-STENT/LABELS@MICCAI 2017: 155-163 - [c107]Mohammad Arafat Hussain, Alborz Amir-Khalili, Ghassan Hamarneh, Rafeef Abugharbieh:
Collage CNN for Renal Cell Carcinoma Detection from CT. MLMI@MICCAI 2017: 229-237 - [c106]Zahra Mirikharaji, Mengliu Zhao, Ghassan Hamarneh:
Globally-Optimal Anatomical Tree Extraction from 3D Medical Images Using Pictorial Structures and Minimal Paths. MICCAI (2) 2017: 242-250 - [c105]Mohammad Arafat Hussain, Alborz Amir-Khalili, Ghassan Hamarneh, Rafeef Abugharbieh:
Segmentation-Free Kidney Localization and Volume Estimation Using Aggregated Orthogonal Decision CNNs. MICCAI (3) 2017: 612-620 - [i7]Jeremy Kawahara, Ghassan Hamarneh:
Fully Convolutional Networks to Detect Clinical Dermoscopic Features. CoRR abs/1703.04559 (2017) - 2016
- [j40]Masoud S. Nosrati, Alborz Amir-Khalili, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Rafeef Abugharbieh, Ghassan Hamarneh:
Endoscopic scene labelling and augmentation using intraoperative pulsatile motion and colour appearance cues with preoperative anatomical priors. Int. J. Comput. Assist. Radiol. Surg. 11(8): 1409-1418 (2016) - [j39]Hengameh Mirzaalian, Tim K. Lee, Ghassan Hamarneh:
Skin lesion tracking using structured graphical models. Medical Image Anal. 27: 84-92 (2016) - [j38]Brian G. Booth, Steven P. Miller, Colin J. Brown, Kenneth J. Poskitt, Vann Chau, Ruth E. Grunau, Anne R. Synnes, Ghassan Hamarneh:
STEAM - Statistical Template Estimation for Abnormality Mapping: A personalized DTI analysis technique with applications to the screening of preterm infants. NeuroImage 125: 705-723 (2016) - [j37]Masoud S. Nosrati, Rafeef Abugharbieh, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Ghassan Hamarneh:
Simultaneous Multi-Structure Segmentation and 3D Nonrigid Pose Estimation in Image-Guided Robotic Surgery. IEEE Trans. Medical Imaging 35(1): 1-12 (2016) - [c104]Ismail M. Khater, David R. L. Scriven, Edwin D. W. Moore, Ghassan Hamarneh:
Sub-Cellular Network Analysis of Ryanodine Receptor Positioning in Control and Phosphorylated States. CinC 2016 - [c103]Lisa Y. W. Tang, Roger C. Tam, Ghassan Hamarneh:
Enhancing accuracy of symmetric random walker image registration via a novel data-consistency measure. ISBI 2016: 28-31 - [c102]Aïcha BenTaieb, Jeremy Kawahara, Ghassan Hamarneh:
Multi-loss convolutional networks for gland analysis in microscopy. ISBI 2016: 642-645 - [c101]Jeremy Kawahara, Aïcha BenTaieb, Ghassan Hamarneh:
Deep features to classify skin lesions. ISBI 2016: 1397-1400 - [c100]Mohammad Arafat Hussain, Ghassan Hamarneh, Timothy W. O'Connell, Mohammed F. Mohammed, Rafeef Abugharbieh:
Segmentation-Free Estimation of Kidney Volumes in CT with Dual Regression Forests. MLMI@MICCAI 2016: 156-163 - [c99]Jeremy Kawahara, Ghassan Hamarneh:
Multi-resolution-Tract CNN with Hybrid Pretrained and Skin-Lesion Trained Layers. MLMI@MICCAI 2016: 164-171 - [c98]Colin J. Brown, Steven P. Miller, Brian G. Booth, Jill G. Zwicker, Ruth E. Grunau, Anne R. Synnes, Vann Chau, Ghassan Hamarneh:
Predictive Subnetwork Extraction with Structural Priors for Infant Connectomes. MICCAI (1) 2016: 175-183 - [c97]Payam Ahmadvand, Nóirín Duggan, François Bénard, Ghassan Hamarneh:
Tumor Lesion Segmentation from 3D PET Using a Machine Learning Driven Active Surface. MLMI@MICCAI 2016: 271-278 - [c96]Aïcha BenTaieb, Ghassan Hamarneh:
Topology Aware Fully Convolutional Networks for Histology Gland Segmentation. MICCAI (2) 2016: 460-468 - [i6]Masoud S. Nosrati, Ghassan Hamarneh:
Incorporating prior knowledge in medical image segmentation: a survey. CoRR abs/1607.01092 (2016) - [i5]Shawn Andrews, Ghassan Hamarneh:
Adaptable Precomputation for Random Walker Image Segmentation and Registration. CoRR abs/1607.04174 (2016) - [i4]Colin J. Brown, Ghassan Hamarneh:
Machine Learning on Human Connectome Data from MRI. CoRR abs/1611.08699 (2016) - 2015
- [j36]Alborz Amir-Khalili, Ghassan Hamarneh, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Rafeef Abugharbieh:
Automatic segmentation of occluded vasculature via pulsatile motion analysis in endoscopic robot-assisted partial nephrectomy video. Medical Image Anal. 25(1): 103-110 (2015) - [j35]Lisa Y. W. Tang, Beverly Hannah, Allard Jongman, Joan A. Sereno, Yue Wang, Ghassan Hamarneh:
Examining visible articulatory features in clear and plain speech. Speech Commun. 75: 1-13 (2015) - [j34]Shawn Andrews, Ghassan Hamarneh:
The Generalized Log-Ratio Transformation: Learning Shape and Adjacency Priors for Simultaneous Thigh Muscle Segmentation. IEEE Trans. Medical Imaging 34(9): 1773-1787 (2015) - [j33]Ching-Wei Wang, Cheng-Ta Huang, Meng-Che Hsieh, Chung-Hsing Li, Sheng-Wei Chang, Wei-Cheng Li, Remy Vandaele, Raphaël Marée, Sébastien Jodogne, Pierre Geurts, Cheng Chen, Guoyan Zheng, Chengwen Chu, Hengameh Mirzaalian, Ghassan Hamarneh, Tomaz Vrtovec, Bulat Ibragimov:
Evaluation and Comparison of Anatomical Landmark Detection Methods for Cephalometric X-Ray Images: A Grand Challenge. IEEE Trans. Medical Imaging 34(9): 1890-1900 (2015) - [c95]Lisa Tang, Beverly Hannah, Allard Jongman, Joan A. Sereno, Yue Wang, Ghassan Hamarneh:
Examining visible articulatory features in clear and conversational speech. ICPhS 2015 - [c94]Masoud S. Nosrati, Ghassan Hamarneh:
Segmentation of overlapping cervical cells: A variational method with star-shape prior. ISBI 2015: 186-189 - [c93]Lisa Y. W. Tang, Shawn Andrews, Ghassan Hamarneh:
Random walker image registration with inverse consistency. ISBI 2015: 837-840 - [c92]Hengameh Mirzaalian, Tim K. Lee, Ghassan Hamarneh:
Skin lesion matching using Jacobian based descriptors for topology preservation. ISBI 2015: 1407-1410 - [c91]Colin J. Brown, Steven P. Miller, Brian G. Booth, Kenneth J. Poskitt, Vann Chau, Anne R. Synnes, Jill G. Zwicker, Ruth E. Grunau, Ghassan Hamarneh:
Prediction of Motor Function in Very Preterm Infants Using Connectome Features and Local Synthetic Instances. MICCAI (1) 2015: 69-76 - [c90]Lisa Y. W. Tang, Ghassan Hamarneh, Anthony Traboulsee, David K. B. Li, Roger C. Tam:
Corpus Callosum Segmentation in MS Studies Using Normal Atlases and Optimal Hybridization of Extrinsic and Intrinsic Image Cues. MICCAI (3) 2015: 123-131 - [c89]Alborz Amir-Khalili, Ghassan Hamarneh, Rafeef Abugharbieh:
Automatic Vessel Segmentation from Pulsatile Radial Distension. MICCAI (3) 2015: 403-410 - [c88]Aïcha BenTaieb, Hector Li-Chang, David G. Huntsman, Ghassan Hamarneh:
Automatic Diagnosis of Ovarian Carcinomas via Sparse Multiresolution Tissue Representation. MICCAI (1) 2015: 629-636 - [i3]Shawn Andrews, Ghassan Hamarneh:
Multi-Region Probabilistic Dice Similarity Coefficient using the Aitchison Distance and Bipartite Graph Matching. CoRR abs/1509.07244 (2015) - 2014
- [j32]Colin J. Brown, Steven P. Miller, Brian G. Booth, Shawn Andrews, Vann Chau, Kenneth J. Poskitt, Ghassan Hamarneh:
Structural network analysis of brain development in young preterm neonates. NeuroImage 101: 667-680 (2014) - [j31]Pablo Guzmán, Ghassan Hamarneh, Rafael Ros, Eduardo Ros:
Arterial Mechanical Motion Estimation Based on a Semi-Rigid Body Deformation Approach. Sensors 14(6): 9429-9450 (2014) - [j30]Hengameh Mirzaalian, Tim K. Lee, Ghassan Hamarneh:
Hair Enhancement in Dermoscopic Images Using Dual-Channel Quaternion Tubularness Filters and MRF-Based Multilabel Optimization. IEEE Trans. Image Process. 23(12): 5486-5496 (2014) - [j29]Hengameh Mirzaalian, Tim K. Lee, Ghassan Hamarneh:
Spatial Normalization of Human Back Images for Dermatological Studies. IEEE J. Biomed. Health Informatics 18(4): 1494-1501 (2014) - [j28]Masoud S. Nosrati, Ghassan Hamarneh:
Local Optimization Based Segmentation of Spatially-Recurring, Multi-Region Objects With Part Configuration Constraints. IEEE Trans. Medical Imaging 33(9): 1845-1859 (2014) - [j27]Shawn Andrews, Neda Changizi, Ghassan Hamarneh:
The Isometric Log-Ratio Transform for Probabilistic Multi-Label Anatomical Shape Representation. IEEE Trans. Medical Imaging 33(9): 1890-1899 (2014) - [c87]Shawn Andrews, Lisa Tang, Ghassan Hamarneh:
Fast random walker image registration using precomputation. ISBI 2014: 189-192 - [c86]Mengliu Zhao, Ghassan Hamarneh:
Bifurcation detection in 3D vascular images using novel features and random forest. ISBI 2014: 421-424 - [c85]Lisa Ying Wai Tang, Ghassan Hamarneh:
Random walker image registration with cost aggregation. ISBI 2014: 576-579 - [c84]Brian G. Booth, Ghassan Hamarneh:
DTI-DeformIt: Generating ground-truth validation data for diffusion tensor image analysis tasks. ISBI 2014: 730-733 - [c83]Ivan Figueroa-Garcia, Jean-Marc Peyrat, Ghassan Hamarneh, Rafeef Abugharbieh:
Biomechanical kidney model for predicting tumor displacement in the presence of external pressure load. ISBI 2014: 810-813 - [c82]Shawn Andrews, Lisa Tang, Ghassan Hamarneh:
Topology Preservation and Anatomical Feasibility in Random Walker Image Registration. MICCAI (1) 2014: 210-217 - [c81]Masoud S. Nosrati, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Rafeef Abugharbieh, Ghassan Hamarneh:
Efficient Multi-organ Segmentation in Multi-view Endoscopic Videos Using Pre-operative Priors. MICCAI (2) 2014: 324-331 - [c80]Alborz Amir-Khalili, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Ghassan Hamarneh, Rafeef Abugharbieh:
Auto Localization and Segmentation of Occluded Vessels in Robot-Assisted Partial Nephrectomy. MICCAI (1) 2014: 407-414 - [c79]Jeremy Kawahara, Jean-Marc Peyrat, Julien Abinahed, Osama Al-Alao, Abdulla Al-Ansari, Rafeef Abugharbieh, Ghassan Hamarneh:
Automatic Labelling of Tumourous Frames in Free-Hand Laparoscopic Ultrasound Video. MICCAI (2) 2014: 676-683 - 2013
- [j26]Oliver van Kaick, Hao Zhang, Ghassan Hamarneh:
Bilateral Maps for Partial Matching. Comput. Graph. Forum 32(6): 189-200 (2013) - [c78]Masoud S. Nosrati, Shawn Andrews, Ghassan Hamarneh:
Bounded Labeling Function for Global Segmentation of Multi-part Objects with Geometric Constraints. ICCV 2013: 2032-2039 - [c77]Colin J. Brown, Brian G. Booth, Ghassan Hamarneh:
K-confidence: Assessing uncertainty in tractography using K optimal paths. ISBI 2013: 250-253 - [c76]Jeremy Kawahara, Chris McIntosh, Roger C. Tam, Ghassan Hamarneh:
Globally optimal spinal cord segmentation using a minimal path in high dimensions. ISBI 2013: 848-851 - [c75]Lisa Y. W. Tang, Ghassan Hamarneh:
Random Walks with Efficient Search and Contextually Adapted Image Similarity for Deformable Registration. MICCAI (2) 2013: 43-50 - [c74]Colin J. Brown, Brian G. Booth, Ghassan Hamarneh:
Uncertainty in Tractography via Tract Confidence Regions. CDMRI/MMBC@MICCAI 2013: 129-138 - [c73]Hamidreza Mirzaei, Lisa Tang, René Werner, Ghassan Hamarneh:
Decision Forests with Spatio-Temporal Features for Graph-Based Tumor Segmentation in 4D Lung CT. MLMI 2013: 179-186 - [c72]Alborz Amir-Khalili, Masoud S. Nosrati, Jean-Marc Peyrat, Ghassan Hamarneh, Rafeef Abugharbieh:
Uncertainty-Encoded Augmented Reality for Robot-Assisted Partial Nephrectomy: A Phantom Study. AE-CAI 2013: 182-191 - [c71]Alborz Amir-Khalili, Jean-Marc Peyrat, Ghassan Hamarneh, Rafeef Abugharbieh:
3D Surface Reconstruction of Organs Using Patient-Specific Shape Priors in Robot-Assisted Laparoscopic Surgery. Abdominal Imaging 2013: 184-193 - [c70]Tayebeh Lotfi, Lisa Tang, Shawn Andrews, Ghassan Hamarneh:
Improving Probabilistic Image Registration via Reinforcement Learning and Uncertainty Evaluation. MLMI 2013: 187-194 - [c69]Jeremy Kawahara, Chris McIntosh, Roger C. Tam, Ghassan Hamarneh:
Augmenting Auto-context with Global Geometric Features for Spinal Cord Segmentation. MLMI 2013: 211-218 - [c68]Masoud S. Nosrati, Ghassan Hamarneh:
Segmentation of Cells with Partial Occlusion and Part Configuration Constraint Using Evolutionary Computation. MICCAI (1) 2013: 461-468 - [c67]Brian G. Booth, Ghassan Hamarneh:
A Cross-Sectional Piecewise Constant Model for Segmenting Highly Curved Fiber Tracts in Diffusion MR Images. MICCAI (3) 2013: 469-476 - 2012
- [j25]Peyman Rahmati, Andy Adler, Ghassan Hamarneh:
Mammography segmentation with maximum likelihood active contours. Medical Image Anal. 16(6): 1167-1186 (2012) - [j24]Lisa Tang, Tim Bressmann, Ghassan Hamarneh:
Tongue contour tracking in dynamic ultrasound via higher-order MRFs and efficient fusion moves. Medical Image Anal. 16(8): 1503-1520 (2012) - [j23]Chris McIntosh, Ghassan Hamarneh:
Medial-Based Deformable Models in Nonconvex Shape-Spaces for Medical Image Segmentation. IEEE Trans. Medical Imaging 31(1): 33-50 (2012) - [j22]Bernard Ng, Ghassan Hamarneh, Rafeef Abugharbieh:
Modeling Brain Activation in fMRI Using Group MRF. IEEE Trans. Medical Imaging 31(5): 1113-1123 (2012) - [c66]K. Krishna Nand, Ghassan Hamarneh, Rafeef Abugharbieh:
Diffusion tensor image processing using biquaternions. ISBI 2012: 538-541 - [c65]Lisa Tang, Alfred O. Hero III, Ghassan Hamarneh:
Locally-adaptive similarity metric for deformable medical image registration. ISBI 2012: 728-731 - [c64]Hengameh Mirzaalian, Tim K. Lee, Ghassan Hamarneh:
Uncertainty-Based Feature Learning for Skin Lesion Matching Using a High Order MRF Optimization Framework. MICCAI (2) 2012: 98-105 - [c63]Daniel-Marian Baboiu, Ghassan Hamarneh:
Vascular bifurcation detection in scale-space. MMBIA 2012: 41-46 - [c62]Brian G. Booth, Ghassan Hamarneh:
Multi-region competitive tractography via graph-based random walks. MMBIA 2012: 73-78 - [c61]Hengameh Mirzaalian, Tim K. Lee, Ghassan Hamarneh:
Learning features for streak detection in dermoscopic color images using localized radial flux of principal intensity curvature. MMBIA 2012: 97-101 - [c60]Hengameh Mirzaalian, Ahmed Saad, Ghassan Hamarneh:
Iterative segmentation and motion correction for dynamic PET images based on radioactive tracer kinetics. MMBIA 2012: 265-270 - [c59]Fahime Sheikhzadeh, Roger C. Tam, Ghassan Hamarneh:
Spatial dispersion of lesions as a surrogate biomarker for disability in multiple sclerosis. MMBIA 2012: 273-278 - 2011
- [j21]Oliver van Kaick, Andrea Tagliasacchi, Oana Sidi, Hao Zhang, Daniel Cohen-Or, Lior Wolf, Ghassan Hamarneh:
Prior Knowledge for Part Correspondence. Comput. Graph. Forum 30(2): 553-562 (2011) - [j20]Andrea Tagliasacchi, Matt Olson, Hao Zhang, Ghassan Hamarneh, Daniel Cohen-Or:
VASE: Volume-Aware Surface Evolution for Surface Reconstruction from Incomplete Point Clouds. Comput. Graph. Forum 30(5): 1563-1571 (2011) - [j19]Oliver van Kaick, Hao Zhang, Ghassan Hamarneh, Daniel Cohen-Or:
A Survey on Shape Correspondence. Comput. Graph. Forum 30(6): 1681-1707 (2011) - [j18]Azadeh Yazdanpanah, Ghassan Hamarneh, Benjamin R. Smith, Marinko Sarunic:
Segmentation of Intra-Retinal Layers From Optical Coherence Tomography Images Using an Active Contour Approach. IEEE Trans. Medical Imaging 30(2): 484-496 (2011) - [j17]Ghassan Hamarneh, Chris McIntosh, Mark S. Drew:
Perception-Based Visualization of Manifold-Valued Medical Images Using Distance-Preserving Dimensionality Reduction. IEEE Trans. Medical Imaging 30(7): 1314-1327 (2011) - [c58]Chris McIntosh, Ghassan Hamarneh, Matthew Toom, Roger C. Tam:
Spinal Cord Segmentation for Volume Estimation in Healthy and Multiple Sclerosis Subjects Using Crawlers and Minimal Paths. HISB 2011: 25-31 - [c57]Brian G. Booth, Ghassan Hamarneh:
Consistent Information Content Estimation for Diffusion Tensor MR Images. HISB 2011: 166-173 - [c56]Shawn Andrews, Chris McIntosh, Ghassan Hamarneh:
Convex multi-region probabilistic segmentation with shape prior in the isometric log-ratio transformation space. ICCV 2011: 2096-2103 - [c55]Brian G. Booth, Ghassan Hamarneh:
Exact integration of diffusion orientation distribution functions for graph-based diffusion MRI analysis. ISBI 2011: 935-938 - [c54]K. Krishna Nand, Rafeef Abugharbieh, Brian G. Booth, Ghassan Hamarneh:
Detecting Structure in Diffusion Tensor MR Images. MICCAI (2) 2011: 90-97 - [c53]Lisa Tang, Ghassan Hamarneh, Tim Bressmann:
A Machine Learning Approach to Tongue Motion Analysis in 2D Ultrasound Image Sequences. MLMI 2011: 151-158 - [c52]Andrew Top, Ghassan Hamarneh, Rafeef Abugharbieh:
Active Learning for Interactive 3D Image Segmentation. MICCAI (3) 2011: 603-610 - [c51]Shawn Andrews, Ghassan Hamarneh, Azadeh Yazdanpanah, Bahareh HajGhanbari, W. Darlene Reid:
Probabilistic Multi-shape Segmentation of Knee Extensor and Flexor Muscles. MICCAI (3) 2011: 651-658 - [p1]Chris McIntosh, Ghassan Hamarneh:
Evolutionary Deformable Models for Medical Image Segmentation: A Genetic Algorithm Approach to Optimizing Learned, Intuitive, and Localized Medial-based Shape Deformation. Genetic and Evolutionary Computation: Medical Applications 2011 - 2010
- [j16]Ahmed Saad, Torsten Möller, Ghassan Hamarneh:
ProbExplorer: Uncertainty-guided Exploration and Editing of Probabilistic Medical Image Segmentation. Comput. Graph. Forum 29(3): 1113-1122 (2010) - [j15]Ghassan Hamarneh, Preet Jassi:
VascuSynth: Simulating vascular trees for generating volumetric image data with ground-truth segmentation and tree analysis. Comput. Medical Imaging Graph. 34(8): 605-616 (2010) - [j14]Lisa Tang, Ghassan Hamarneh, Anna Celler:
Dual-isotope Acquisition for CT-SPECT Registration of Infection Studies. J. Digit. Imaging 23(3): 258-267 (2010) - [j13]Aaron D. Ward, Ghassan Hamarneh:
The Groupwise Medial Axis Transform for Fuzzy Skeletonization and Pruning. IEEE Trans. Pattern Anal. Mach. Intell. 32(6): 1084-1096 (2010) - [j12]Ahmed Saad, Ghassan Hamarneh, Torsten Möller:
Exploration and Visualization of Segmentation Uncertainty using Shape and Appearance Prior Information. IEEE Trans. Vis. Comput. Graph. 16(6): 1366-1375 (2010) - [c50]Lisa Tang, Ghassan Hamarneh:
Graph-based tracking of the tongue contour in ultrasound sequences with adaptive temporal regularization. CVPR Workshops 2010: 154-161 - [c49]Bernard Ng, Rafeef Abugharbieh, Ghassan Hamarneh:
Group MRF for fMRI activation detection. CVPR 2010: 2887-2894 - [c48]Hengameh Mirzaalian, Ghassan Hamarneh:
Vessel scale-selection using MRF optimization. CVPR 2010: 3273-3279 - [c47]Josna Rao, Rafeef Abugharbieh, Ghassan Hamarneh:
Adaptive Regularization for Image Segmentation Using Local Image Curvature Cues. ECCV (4) 2010: 651-665 - [c46]Oliver van Kaick, Hao Zhang, Ghassan Hamarneh, Daniel Cohen-Or:
A Survey on Shape Correspondence. Eurographics (State of the Art Reports) 2010: 61-82 - [c45]Peyman Rahmati, Ghassan Hamarneh, Doron Nussbaum, Andy Adler:
A New Preprocessing Filter for Digital Mammograms. ICISP 2010: 585-592 - [c44]Shawn Andrews, Ghassan Hamarneh, Ahmed Saad:
Fast Random Walker with Priors Using Precomputation for Interactive Medical Image Segmentation. MICCAI (3) 2010: 9-16 - [c43]Neda Changizi, Ghassan Hamarneh, Omer Ishaq, Aaron D. Ward, Roger C. Tam:
Extraction of the Plane of Minimal Cross-Sectional Area of the Corpus Callosum Using Template-Driven Segmentation. MICCAI (3) 2010: 17-24 - [c42]Bernard Ng, Arash Vahdat, Ghassan Hamarneh, Rafeef Abugharbieh:
Generalized Sparse Classifiers for Decoding Cognitive States in fMRI. MLMI 2010: 108-115 - [c41]Andrew Top, Ghassan Hamarneh, Rafeef Abugharbieh:
Spotlight: Automated Confidence-Based User Guidance for Increasing Efficiency in Interactive 3D Image Segmentation. MCV 2010: 204-213 - [c40]Bernard Ng, Ghassan Hamarneh, Rafeef Abugharbieh:
Detecting Brain Activation in fMRI Using Group Random Walker. MICCAI (2) 2010: 331-338 - [c39]Neda Changizi, Ghassan Hamarneh:
Probabilistic Multi-Shape Representation Using an Isometric Log-Ratio Mapping. MICCAI (3) 2010: 563-570 - [c38]Lisa Tang, Ghassan Hamarneh, Rafeef Abugharbieh:
Reliability-Driven, Spatially-Adaptive Regularization for Deformable Registration. WBIR 2010: 173-185
2000 – 2009
- 2009
- [j11]Ghassan Hamarneh, Xiaoxing Li:
Watershed segmentation using prior shape and appearance knowledge. Image Vis. Comput. 27(1-2): 59-68 (2009) - [j10]Warren Cheung, Ghassan Hamarneh:
n -SIFT: n -Dimensional Scale Invariant Feature Transform. IEEE Trans. Image Process. 18(9): 2012-2021 (2009) - [c37]Hengameh Mirzaalian, Ghassan Hamarneh, Tim K. Lee:
A graph-based approach to skin mole matching incorporating template-normalized coordinates. CVPR 2009: 2152-2159 - [c36]Ghassan Hamarneh:
Multi-label MRF Optimization via a Least Squares s - t Cut. ISVC (1) 2009: 1055-1066 - [c35]Chris McIntosh, Ghassan Hamarneh:
Optimal Weights for Convex Functionals in Medical Image Segmentation. ISVC (1) 2009: 1079-1088 - [c34]Josna Rao, Ghassan Hamarneh, Rafeef Abugharbieh:
Adaptive Contextual Energy Parameterization for Automated Image Segmentation. ISVC (1) 2009: 1089-1100 - [c33]Mahya Sadeghi, Geoffrey Tien, Ghassan Hamarneh, M. Stella Atkins:
Hands-free interactive image segmentation using eyegaze. Computer-Aided Diagnosis 2009: 72601H - [c32]Azadeh Yazdanpanah, Ghassan Hamarneh, Benjamin Smith, Marinko Sarunic:
Intra-retinal Layer Segmentation in Optical Coherence Tomography Using an Active Contour Approach. MICCAI (1) 2009: 649-656 - [i2]Josna Rao, Ghassan Hamarneh, Rafeef Abugharbieh:
Automatic Spatially-Adaptive Balancing of Energy Terms for Image Segmentation. CoRR abs/0906.4131 (2009) - [i1]Ghassan Hamarneh:
Multi-Label MRF Optimization via Least Squares s-t Cuts. CoRR abs/0907.0204 (2009) - 2008
- [j9]Miranda Poon, Ghassan Hamarneh, Rafeef Abugharbieh:
Efficient interactive 3D Livewire segmentation of complex objects with arbitrary topology. Comput. Medical Imaging Graph. 32(8): 639-650 (2008) - [j8]Lisa Tang, Ghassan Hamarneh, Anna Celler:
Validation of mutual information-based registration of CT and bone SPECT images in dual-isotope studies. Comput. Methods Programs Biomed. 92(2): 173-185 (2008) - [j7]Aaron D. Ward, Ghassan Hamarneh, Mark E. Schweitzer:
3D Bicipital Groove Shape Analysis and Relationship to Tendopathy. J. Digit. Imaging 21(2): 219-234 (2008) - [j6]Andrew Rova, Anna Celler, Ghassan Hamarneh:
Development of NEMA-based Software for Gamma Camera Quality Control. J. Digit. Imaging 21(2): 243-255 (2008) - [c31]Lisa Tang, Ghassan Hamarneh:
SMRFI: Shape matching via registration of vector-valued feature images. CVPR 2008 - [c30]Lilong Shi, Brian V. Funt, Ghassan Hamarneh:
Quaternion Color Curvature. CIC 2008: 338-341 - [c29]Ahmed Saad, Ghassan Hamarneh, Torsten Möller, Benjamin Smith:
Kinetic Modeling Based Probabilistic Segmentation for Molecular Images. MICCAI (1) 2008: 244-252 - [c28]Ghassan Hamarneh, Preet Jassi, Lisa Tang:
Simulation of Ground-Truth Validation Data Via Physically- and Statistically-Based Warps. MICCAI (1) 2008: 459-467 - 2007
- [j5]Ghassan Hamarneh, Judith Hradsky:
Bilateral Filtering of Diffusion Tensor Magnetic Resonance Images. IEEE Trans. Image Process. 16(10): 2463-2475 (2007) - [c27]Zhe Fang, Torsten Möller, Ghassan Hamarneh, Anna Celler:
Visualization and exploration of time-varying medical image data sets. Graphics Interface 2007: 281-288 - [c26]Mark S. Drew, Ghassan Hamarneh:
Visualizing Diffusion Tensor Dissimilarity using an ICA Based Perceptual Colour Metric. CIC 2007: 42-47 - [c25]Warren Cheung, Ghassan Hamarneh:
N-Sift: N-Dimensional Scale Invariant Feature Transform for Matching Medical Images. ISBI 2007: 720-723 - [c24]Ghassan Hamarneh, Aaron D. Ward, Richard Frank:
Quantification and Visualization of Localized and Intuitive Shape Variability Using a Novel Medial-Based Shape Representation. ISBI 2007: 1232-1235 - [c23]Aaron D. Ward, Ghassan Hamarneh:
Statistical Shape Modeling Using MDL Incorporating Shape, Appearance, and Expert Knowledge. MICCAI (1) 2007: 278-285 - [c22]Kelvin Poon, Ghassan Hamarneh, Rafeef Abugharbieh:
Live-Vessel: Extending Livewire for Simultaneous Extraction of Optimal Medial and Boundary Paths in Vascular Images. MICCAI (2) 2007: 444-451 - [c21]Chris McIntosh, Ghassan Hamarneh:
Is a Single Energy Functional Sufficient? Adaptive Energy Functionals and Automatic Initialization. MICCAI (2) 2007: 503-510 - [c20]Ahmed Saad, Benjamin Smith, Ghassan Hamarneh, Torsten Möller:
Simultaneous Segmentation, Kinetic Parameter Estimation, and Uncertainty Visualization of Dynamic PET Images. MICCAI (2) 2007: 726-733 - [c19]Yonas T. Weldeselassie, Ghassan Hamarneh, Daniel Weiskopf:
Tensor dissimilarity based adaptive seeding algorithm for DT-MRI visualization with streamtubes. Image-Guided Procedures 2007: 65092M - [c18]Aaron D. Ward, Ghassan Hamarneh:
3D surface parameterization using manifold learning for medial shape representation. Image Processing 2007: 65120X - [c17]Yonas T. Weldeselassie, Ghassan Hamarneh:
DT-MRI segmentation using graph cuts. Image Processing 2007: 65121K - [c16]Kelvin Poon, Ghassan Hamarneh, Rafeef Abugharbieh:
Segmentation of complex objects with non-spherical topologies from volumetric medical images using 3D livewire. Image Processing 2007: 651231 - [c15]Oliver van Kaick, Ghassan Hamarneh, Hao Zhang, Paul Wighton:
Contour Correspondence via Ant Colony Optimization. PG 2007: 271-280 - 2006
- [c14]Chris McIntosh, Ghassan Hamarneh:
Vessel Crawlers: 3D Physically-based Deformable Organisms for Vasculature Segmentation and Analysis. CVPR (1) 2006: 1084-1091 - [c13]Chris McIntosh, Ghassan Hamarneh:
Spinal Crawlers: Deformable Organisms for Spinal Cord Segmentation and Analysis. MICCAI (1) 2006: 808-815 - [c12]Vincent Chu, Ghassan Hamarneh:
MATLAB-ITK interface for medical image filtering, segmentation, and registration. Image Processing 2006: 61443T - 2005
- [c11]Xiaoxing Li, Ghassan Hamarneh:
Modeling Prior Shape and Appearance Knowledge in Watershed Segmentat. CRV 2005: 27-33 - [c10]Artur Chodorowski, Ulf Mattsson, Morgan Langille, Ghassan Hamarneh:
Color lesion boundary detection using live wire. Image Processing 2005 - [c9]Ghassan Hamarneh, Chris McIntosh:
Physics-based deformable organisms for medical image analysis. Image Processing 2005 - [c8]Ghassan Hamarneh, Johnson Yang, Chris McIntosh, Morgan Langille:
3D live-wire-based semi-automatic segmentation of medical images. Image Processing 2005 - 2004
- [j4]Ghassan Hamarneh, Rafeef Abugharbieh, Tim McInerney:
Medial Profiles for Modeling Deformation and Statistical Analysis of Shape and their Use in Medical Image Segmentation. Int. J. Shape Model. 10(2): 187-210 (2004) - [j3]Ghassan Hamarneh, Tomas Gustavsson:
Deformable spatio-temporal shape models: extending active shape models to 2D+time. Image Vis. Comput. 22(6): 461-470 (2004) - 2003
- [j2]Rafeef Abugharbieh, Ghassan Hamarneh, Tomas Gustavsson, Clemens Kaminski:
Level Set Curve Matching and Particle Image Velocimetry for Resolving Chemistry and Turbulence Interactions in Propagating Flames. J. Math. Imaging Vis. 19(3): 199-218 (2003) - [c7]Ghassan Hamarneh, Tim McInerney:
Physics-based shape deformations for medical image analysis. Image Processing: Algorithms and Systems 2003: 354-362 - [c6]Natasa Kovacevic, Ghassan Hamarneh, R. Mark Henkelman:
Anatomically Guided Registration of Whole Body Mouse MR Images. MICCAI (2) 2003: 870-877 - [c5]Ghassan Hamarneh, X. Josette Chen, Brian Neiman, Jeff Henderson, R. Mark Henkelman:
Segmentation, Registration, and Deformation Analysis of 3D MR Images of Mice. MICCAI (2) 2003: 878-885 - 2002
- [j1]Tim McInerney, Ghassan Hamarneh, Martha Elizabeth Shenton, Demetri Terzopoulos:
Deformable organisms for automatic medical image analysis. Medical Image Anal. 6(3): 251-266 (2002) - 2001
- [b1]Ghassan Hamarneh:
Towards Intelligent Deformable Models for Medical Image Analysis. Chalmers University of Technology, Gothenburg, Sweden, 2001 - [c4]Ghassan Hamarneh, Tomas Gustavsson:
Deformable Spatio-Temporal Shape Models: Extending ASM to 2D+Time. BMVC 2001: 1-10 - [c3]Ghassan Hamarneh, Tim McInerney, Demetri Terzopoulos:
Deformable Organisms for Automatic Medical Image Analysis. MICCAI 2001: 66-76 - 2000
- [c2]Ghassan Hamarneh, Tomas Gustavsson:
Statistically constrained snake deformations. SMC 2000: 1610-1615 - [c1]Ghassan Hamarneh, Artur Chodorowski, Tomas Gustavsson:
Active contour models: application to oral lesion detection in color images. SMC 2000: 2458-2463
Coauthor Index
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