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2020 – today
- 2022
[j18]Magnus Haraldson Høie
, Erik Nicolas Kiehl, Bent Petersen, Morten Nielsen, Ole Winther, Henrik Nielsen, Jeppe Hallgren, Paolo Marcatili:
NetSurfP-3.0: accurate and fast prediction of protein structural features by protein language models and deep learning. Nucleic Acids Res. 50(W1): 510-515 (2022)- 2020
- [j17]Francesco Ambrosetti, Tobias Hegelund Olsen, Pier Paolo Olimpieri, Brian Jiménez-García, Edoardo Milanetti, Paolo Marcatili, Alexandre M. J. J. Bonvin:
proABC-2: PRediction of AntiBody contacts v2 and its application to information-driven docking. Bioinform. 36(20): 5107-5108 (2020) - [j16]Wanessa C. Lima, Elisabeth Gasteiger, Paolo Marcatili, Paula Duek Roggli, Amos Bairoch, Pierre Cosson:
The ABCD database: a repository for chemically defined antibodies. Nucleic Acids Res. 48(Database-Issue): D261-D264 (2020)
2010 – 2019
- 2019
- [j15]Swapnil Mahajan, Zhen Yan, Martin Closter Jespersen, Kamilla Kjærgaard Jensen, Paolo Marcatili, Morten Nielsen, Alessandro Sette, Bjoern Peters:
Benchmark datasets of immune receptor-epitope structural complexes. BMC Bioinform. 20(1): 490:1-490:7 (2019) - [j14]Sandeep Kumar Dhanda, Swapnil Mahajan, Sinu Paul, Zhen Yan, Haeuk Kim, Martin Closter Jespersen, Vanessa Isabell Jurtz, Massimo Andreatta, Jason A. Greenbaum, Paolo Marcatili, Alessandro Sette, Morten Nielsen, Bjoern Peters:
IEDB-AR: immune epitope database - analysis resource in 2019. Nucleic Acids Res. 47(Webserver-Issue): W502-W506 (2019) - 2018
- [j13]Eleftheria Polychronidou, Ilias Kalamaras, Andreas Agathangelidis, Lesley Ann Sutton, Xiao-Jie Yan, Vasilis Bikos, Anna Vardi, Konstantinos Mochament, Nicholas Chiorazzi, Chrysoula Belessi, Richard Rosenquist, Paolo Ghia, Kostas Stamatopoulos, Panayiotis M. Vlamos, Anna Chailyan, Nanna Overby, Paolo Marcatili, Anastasia Hatzidimitriou, Dimitrios Tzovaras:
Automated shape-based clustering of 3D immunoglobulin protein structures in chronic lymphocytic leukemia. BMC Bioinform. 19-S(14): 67-81 (2018) - 2017
- [j12]Martin Closter Jespersen, Bjoern Peters, Morten Nielsen, Paolo Marcatili:
BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes. Nucleic Acids Res. 45(Webserver-Issue): W24-W29 (2017) - [c2]Konstantinos Mochament, Andreas Agathangelidis, Eleftheria Polychronidou, Christos Palaskas, Elias Kalamaras, Panagiotis Moschonas, Kostas Stamatopoulos, Anna Chailyan, Nanna Overby, Paolo Marcatili, Anastasia Hadzidimitriou, Dimitrios Tzovaras:
3D Protein-Structure-Oriented Discovery of Clinical Relation Across Chronic Lymphocytic Leukemia Patients. IWBBIO (2) 2017: 139-150 - 2016
- [j11]Lorenzo Asti, Guido Uguzzoni, Paolo Marcatili, Andrea Pagnani:
Maximum-Entropy Models of Sequenced Immune Repertoires Predict Antigen-Antibody Affinity. PLoS Comput. Biol. 12(4) (2016) - 2015
- [j10]Pier Paolo Olimpieri, Paolo Marcatili, Anna Tramontano:
Tabhu: tools for antibody humanization. Bioinform. 31(3): 434-435 (2015) - [j9]Michael Schantz Klausen, Mads Valdemar Anderson, Martin Closter Jespersen, Morten Nielsen, Paolo Marcatili:
LYRA, a webserver for lymphocyte receptor structural modeling. Nucleic Acids Res. 43(Webserver-Issue): W349-W355 (2015) - 2014
- [j8]Mario Abdel Messih, Rosalba Lepore, Paolo Marcatili, Anna Tramontano:
Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies. Bioinform. 30(19): 2733-2740 (2014) - 2013
- [j7]Pier Paolo Olimpieri, Anna Chailyan, Anna Tramontano, Paolo Marcatili:
Prediction of site-specific interactions in antibody-antigen complexes: the proABC method and server. Bioinform. 29(18): 2285-2291 (2013) - 2012
- [j6]Anna Chailyan, Anna Tramontano, Paolo Marcatili:
A database of immunoglobulins with integrated tools: DIGIT. Nucleic Acids Res. 40(Database-Issue): 1230-1234 (2012) - 2011
- [j5]Matteo Floris, Domenico Raimondo, Guido Leoni, Massimiliano Orsini, Paolo Marcatili, Anna Tramontano:
MAISTAS: a tool for automatic structural evaluation of alternative splicing products. Bioinform. 27(12): 1625-1629 (2011) - 2010
- [j4]Loredana Le Pera, Paolo Marcatili, Anna Tramontano:
PICMI: mapping point mutations on genomes. Bioinform. 26(22): 2904-2905 (2010) - [c1]Anna Chailyan, Davide Cirillo, Paolo Marcatili, Anna Tramontano:
Structural landscape of immunoglobulin lambda light chains. BCB 2010: 651-652
2000 – 2009
- 2008
- [j3]Paolo Marcatili, Alessandra Rosi, Anna Tramontano:
PIGS: automatic prediction of antibody structures. Bioinform. 24(17): 1953-1954 (2008) - [j2]Gabriele Ausiello, Pier Federico Gherardini, Paolo Marcatili, Anna Tramontano, Allegra Via, Manuela Helmer-Citterich:
FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures. BMC Bioinform. 9(S-2) (2008) - [j1]Paolo Marcatili, Giovanni Bussotti, Anna Tramontano:
The MoVIN server for the analysis of protein interaction networks. BMC Bioinform. 9(S-2) (2008)
Coauthor Index
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