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ORCIDGraciela Gonzalez-Hernandez
Graciela Gonzalez 0001
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- affiliation: University of Pennsylvania: Philadelphia, USA
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2020 – today
- 2024
[j41]Ari Z. Klein
, Juan M. Banda, Yuting Guo, Ana Lucía Schmidt, Dongfang Xu, Ivan Flores Amaro, Raul Rodriguez-Esteban, Abeed Sarker, Graciela Gonzalez-Hernandez:
Overview of the 8th Social Media Mining for Health Applications (#SMM4H) shared tasks at the AMIA 2023 Annual Symposium. J. Am. Medical Informatics Assoc. 31(4): 991-996 (2024)- [j40]Davy Weissenbacher, Katherine R. Courtright, Siddharth Rawal, Andrew Crane-Droesch, Karen O'Connor, Nicholas Kuhl, Corinne Merlino, Anessa Foxwell, Lindsay Haines, Joseph C. Puhl, Graciela Gonzalez-Hernandez:
Detecting goals of care conversations in clinical notes with active learning. J. Biomed. Informatics 151: 104618 (2024) - [c60]Dongfang Xu, Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Graciela Gonzalez-Hernandez:
Automatic sentence segmentation of clinical record narratives in real-world data. EMNLP 2024: 20780-20793 - [i12]Yao Ge, Sudeshna Das, Karen O'Connor, Mohammed Ali Al-Garadi, Graciela Gonzalez-Hernandez, Abeed Sarker:
Reddit-Impacts: A Named Entity Recognition Dataset for Analyzing Clinical and Social Effects of Substance Use Derived from Social Media. CoRR abs/2405.06145 (2024) - 2023
- [j39]Jesse G. Meyer, Ryan J. Urbanowicz, Patrick C. N. Martin, Karen O'Connor, Ruowang Li, Pei-Chen Peng, Tiffani J. Bright, Nicholas P. Tatonetti, Kyoung-Jae Won, Graciela Gonzalez-Hernandez, Jason H. Moore:
ChatGPT and large language models in academia: opportunities and challenges. BioData Min. 16(1) (2023) - [j38]Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy A. Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen R. Piccolo, Peijin Han, V. G. Vinod Vydiswaran, Ramya Tekumalla, Juan M. Banda, Parsa Bagherzadeh, Sabine Bergler, João Figueira Silva, Tiago Melo Almeida, Paloma Martínez, Renzo M. Rivera Zavala, Chen-Kai Wang, Hong-Jie Dai, Luis Alberto Robles Hernandez, Graciela Gonzalez-Hernandez:
Automatic Extraction of Medication Mentions from Tweets - Overview of the BioCreative VII Shared Task 3 Competition. Database J. Biol. Databases Curation 2023 (2023) - 2022
- [j37]Graciela Gonzalez-Hernandez, Martin Krallinger, Monica A. Muñoz, Raul Rodriguez-Esteban, Özlem Uzuner, Lynette Hirschman:
Challenges and opportunities for mining adverse drug reactions: perspectives from pharma, regulatory agencies, healthcare providers and consumers. Database J. Biol. Databases Curation 2022(2022) (2022) - [c59]Davy Weissenbacher, Juan M. Banda, Vera Davydova, Darryl Estrada-Zavala, Luis Gascó Sánchez, Yao Ge, Yuting Guo, Ari Z. Klein, Martin Krallinger, Mathias Leddin, Arjun Magge, Raul Rodriguez-Esteban, Abeed Sarker, Ana Lucía Schmidt, Elena Tutubalina, Graciela Gonzalez-Hernandez:
Overview of the Seventh Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2022. SMM4H@COLING 2022: 221-241 - [e6]Graciela Gonzalez-Hernandez, Davy Weissenbacher:
Proceedings of The Seventh Workshop on Social Media Mining for Health Applications, Workshop & Shared Task, SMM4H@COLING 2022, Gyeongju, Republic of Korea, October 12 - 17, 2022. Association for Computational Linguistics 2022 [contents] - 2021
- [j36]Arjun Magge, Elena Tutubalina, Zulfat Miftahutdinov, Ilseyar Alimova, Anne Dirkson, Suzan Verberne, Davy Weissenbacher, Graciela Gonzalez-Hernandez:
DeepADEMiner: a deep learning pharmacovigilance pipeline for extraction and normalization of adverse drug event mentions on Twitter. J. Am. Medical Informatics Assoc. 28(10): 2184-2192 (2021) - [j35]Davy Weissenbacher, Suyu Ge, Ari Z. Klein, Karen O'Connor, Robert Gross, Sean Hennessy, Graciela Gonzalez-Hernandez:
Active neural networks to detect mentions of changes to medication treatment in social media. J. Am. Medical Informatics Assoc. 28(12): 2551-2561 (2021) - [j34]Mohammed Ali Al-Garadi, Yuan-Chi Yang, Haitao Cai, Yucheng Ruan, Karen O'Connor, Graciela Gonzalez-Hernandez, Jeanmarie Perrone, Abeed Sarker:
Text classification models for the automatic detection of nonmedical prescription medication use from social media. BMC Medical Informatics Decis. Mak. 21(1): 27 (2021) - [c58]Davy Weissenbacher, Siddharth Rawal, Arjun Magge, Graciela Gonzalez-Hernandez:
Addressing Extreme Imbalance for Detecting Medications Mentioned in Twitter User Timelines. AIME 2021: 93-102 - [c57]Mary Regina Boland, Karin Verspoor, Maricel G. Kann, Su Golder, Lisa Levine, Karen O'Conner, Natalia Villanueva-Rosales, Graciela Gonzalez-Hernandez:
Advanced Methods for Big Data Analytics in Women's Health. PSB 2021 - [c56]Arjun Magge, Ari Z. Klein, Antonio Miranda-Escalada, Mohammed Ali Al-Garadi, Ilseyar Alimova, Zulfat Miftahutdinov, Eulàlia Farré, Salvador Lima-López, Ivan Flores, Karen O'Connor, Davy Weissenbacher, Elena Tutubalina, Abeed Sarker, Juan M. Banda, Martin Krallinger, Graciela Gonzalez-Hernandez:
Overview of the Sixth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at NAACL 2021. SMM4H@NAACL-HLT 2021: 21-32 - [e5]Arjun Magge, Ari Z. Klein, Antonio Miranda-Escalada, Mohammed Ali Al-garadi, Ilseyar Alimova, Zulfat Miftahutdinov, Eulàlia Farré-Maduell, Salvador Lima-López, Ivan Flores, Karen O'Connor, Davy Weissenbacher, Elena Tutubalina, Abeed Sarker, Juan M. Banda, Martin Krallinger, Graciela Gonzalez-Hernandez:
Proceedings of the Sixth Social Media Mining for Health Workshop and Shared Task, SMM4H@NAACL-HLT 2021, Mexico City, Mexico, June 10, 2021. Association for Computational Linguistics 2021, ISBN 978-1-954085-31-2 [contents] - [i11]Ari Z. Klein, Arjun Magge, Graciela Gonzalez-Hernandez:
ReportAGE: Automatically extracting the exact age of Twitter users based on self-reports in tweets. CoRR abs/2103.06357 (2021) - 2020
- [j33]Jason H. Moore, Ian Barnett, Mary Regina Boland, Yong Chen, George Demiris, Graciela Gonzalez-Hernandez, Daniel S. Herman, Blanca E. Himes, Rebecca A. Hubbard, Dokyoon Kim, Jeffrey S. Morris, Danielle L. Mowery, Marylyn D. Ritchie, Li Shen, Ryan J. Urbanowicz, John H. Holmes:
Ideas for how informaticians can get involved with COVID-19 research. BioData Min. 13(1): 3 (2020) - [j32]Arjun Magge, Davy Weissenbacher, Karen O'Connor, Tasnia Tahsin, Graciela Gonzalez-Hernandez, Matthew Scotch:
GeoBoost2: a natural languageprocessing pipeline for GenBank metadata enrichment for virus phylogeography. Bioinform. 36(20): 5120-5121 (2020) - [c55]Arjun Magge, Varad Pimpalkhute, Divya Rallapalli, David Siguenza, Graciela Gonzalez-Hernandez:
UPennHLP at WNUT-2020 Task 2 : Transformer models for classification of COVID19 posts on Twitter. W-NUT@EMNLP 2020: 378-382 - [c54]Ari Z. Klein, Ilseyar Alimova, Ivan Flores, Arjun Magge, Zulfat Miftahutdinov, Anne-Lyse Minard, Karen O'Connor, Abeed Sarker, Elena Tutubalina, Davy Weissenbacher, Graciela Gonzalez-Hernandez:
Overview of the Fifth Social Media Mining for Health Applications (#SMM4H) Shared Tasks at COLING 2020. SMM4H@COLING 2020: 27-36 - [e4]Graciela Gonzalez-Hernandez, Ari Z. Klein, Ivan Flores, Davy Weissenbacher, Arjun Magge, Karen O'Connor, Abeed Sarker, Anne-Lyse Minard, Elena Tutubalina, Zulfat Miftahutdinov, Ilseyar Alimova:
Proceedings of the Fifth Social Media Mining for Health Applications Workshop & Shared Task, SMM4H@COLING 2020, Barcelona, Spain (Online), December 12, 2020. Association for Computational Linguistics 2020, ISBN 978-1-952148-41-5 [contents]
2010 – 2019
- 2019
- [j31]Mary Regina Boland, Snigdha Alur-Gupta, Lisa Levine, Peter Gabriel, Graciela Gonzalez-Hernandez:
Disease associations depend on visit type: results from a visit-wide association study. BioData Min. 12(1): 15:1-15:10 (2019) - [j30]Arjun Magge, Abeed Sarker, Azadeh Nikfarjam, Graciela Gonzalez-Hernandez:
Comment on: "Deep learning for pharmacovigilance: recurrent neural network architectures for labeling adverse drug reactions in Twitter posts". J. Am. Medical Informatics Assoc. 26(6): 577-579 (2019) - [j29]Davy Weissenbacher, Abeed Sarker, Ari Z. Klein, Karen O'Connor, Arjun Magge, Graciela Gonzalez-Hernandez:
Deep neural networks ensemble for detecting medication mentions in tweets. J. Am. Medical Informatics Assoc. 26(12): 1618-1626 (2019) - [j28]Abeed Sarker, Ari Z. Klein, Janet Mee, Polina Harik, Graciela Gonzalez-Hernandez:
An interpretable natural language processing system for written medical examination assessment. J. Biomed. Informatics 98 (2019) - [j27]Ari Z. Klein, Abeed Sarker, Davy Weissenbacher, Graciela Gonzalez-Hernandez:
Towards scaling Twitter for digital epidemiology of birth defects. npj Digit. Medicine 2 (2019) - [c53]Abeed Sarker, Graciela Gonzalez-Hernandez, Jeanmarie Perrone:
Towards Automating Location-Specific Opioid Toxicosurveillance from Twitter via Data Science Methods. MedInfo 2019: 333-337 - [c52]Arjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez:
Bi-directional Recurrent Neural Network Models for Geographic Location Extraction in Biomedical Literature. PSB 2019: 100-111 - [c51]Graciela Gonzalez, Zhiyong Lu, Robert Leaman, Davy Weissenbacher, Mary Regina Boland, Yong Chen, Jingcheng Du, Juliane Fluck, Casey S. Greene, John H. Holmes, Aditya Kashyap, Rikke Linnemann Nielsen, Zhengqing Ouyang, Sebastian Schaaf, Jaclyn N. Taroni, Cui Tao, Yuping Zhang, Hongfang Liu:
Text Mining and Machine Learning for Precision Medicine. PSB 2019: 449-454 - [c50]Davy Weissenbacher, Arjun Magge, Karen O'Connor, Matthew Scotch, Graciela Gonzalez-Hernandez:
SemEval-2019 Task 12: Toponym Resolution in Scientific Papers. SemEval@NAACL-HLT 2019: 907-916 - [c49]Davy Weissenbacher, Abeed Sarker, Arjun Magge, Ashlynn R. Daughton, Karen O'Connor, Michael J. Paul, Graciela Gonzalez-Hernandez:
Overview of the Fourth Social Media Mining for Health (SMM4H) Shared Tasks at ACL 2019. SMM4H@ACL 2019: 21-30 - [e3]Davy Weissenbacher, Graciela Gonzalez-Hernandez:
Proceedings of the Fourth Social Media Mining for Health Application Workshop & Shared Task, SMM4H@ACL 2019, Florence, Italy, August 2, 2019. Association for Computational Linguistics 2019, ISBN 978-1-950737-46-8 [contents] - [i10]Davy Weissenbacher, Abeed Sarker, Ari Z. Klein, Karen O'Connor, Arjun Magge Ranganatha, Graciela Gonzalez-Hernandez:
Deep Neural Networks Ensemble for Detecting Medication Mentions in Tweets. CoRR abs/1904.05308 (2019) - [i9]Ari Z. Klein, Abeselom Gebreyesus, Graciela Gonzalez-Hernandez:
Automatically Identifying Comparator Groups on Twitter for Digital Epidemiology of Pregnancy Outcomes. CoRR abs/1908.06015 (2019) - [i8]Anahita Davoudi, Ari Z. Klein, Abeed Sarker, Graciela Gonzalez-Hernandez:
Towards Automatic Bot Detection in Twitter for Health-related Tasks. CoRR abs/1909.13184 (2019) - 2018
- [j26]Tasnia Tahsin, Davy Weissenbacher, Karen O'Connor, Arjun Magge, Matthew Scotch, Graciela Gonzalez-Hernandez:
GeoBoost: accelerating research involving the geospatial metadata of virus GenBank records. Bioinform. 34(9): 1606-1608 (2018) - [j25]Arjun Magge, Davy Weissenbacher, Abeed Sarker, Matthew Scotch, Graciela Gonzalez-Hernandez:
Deep neural networks and distant supervision for geographic location mention extraction. Bioinform. 34(13): i565-i573 (2018) - [j24]Abeed Sarker, Maksim Belousov, Jasper Friedrichs, Kai Hakala, Svetlana Kiritchenko, Farrokh Mehryary, Sifei Han, Tung Tran, Anthony Rios, Ramakanth Kavuluru, Berry de Bruijn, Filip Ginter, Debanjan Mahata, Saif M. Mohammad, Goran Nenadic, Graciela Gonzalez-Hernandez:
Data and systems for medication-related text classification and concept normalization from Twitter: insights from the Social Media Mining for Health (SMM4H)-2017 shared task. J. Am. Medical Informatics Assoc. 25(10): 1274-1283 (2018) - [j23]Ari Z. Klein, Abeed Sarker, Haitao Cai, Davy Weissenbacher, Graciela Gonzalez-Hernandez:
Social media mining for birth defects research: A rule-based, bootstrapping approach to collecting data for rare health-related events on Twitter. J. Biomed. Informatics 87: 68-78 (2018) - [j22]Abeed Sarker, Graciela Gonzalez-Hernandez:
An unsupervised and customizable misspelling generator for mining noisy health-related text sources. J. Biomed. Informatics 88: 98-107 (2018) - [c48]Masoud Rouhizadeh, Arjun Magge, Ari Z. Klein, Abeed Sarker, Graciela Gonzalez:
A Rule-based Approach to Determining Pregnancy Timeframe from Contextual Social Media Postings. DH 2018: 16-20 - [c47]Arjun Magge, Matthew Scotch, Graciela Gonzalez-Hernandez:
Clinical NER and Relation Extraction using Bi-Char-LSTMs and Random Forest Classifiers. Medication and Adverse Drug Event Detection 2018: 25-30 - [c46]Graciela Gonzalez-Hernandez, Abeed Sarker, Karen O'Connor, Casey S. Greene, Hongfang Liu:
Session Introduction. PSB 2018: 559-565 - [c45]Davy Weissenbacher, Abeed Sarker, Michael J. Paul, Graciela Gonzalez-Hernandez:
Overview of the Third Social Media Mining for Health (SMM4H) Shared Tasks at EMNLP 2018. SMM4H@EMNLP 2018: 13-16 - [c44]Takeshi Onishi, Davy Weissenbacher, Ari Z. Klein, Karen O'Connor, Graciela Gonzalez-Hernandez:
Dealing with Medication Non-Adherence Expressions in Twitter. SMM4H@EMNLP 2018: 32-33 - [e2]Graciela Gonzalez-Hernandez, Davy Weissenbacher, Abeed Sarker, Michael J. Paul:
Proceedings of the 2018 EMNLP Workshop SMM4H: The 3rd Social Media Mining for Health Applications Workshop & Shared Task, SMM4H@EMNLP 2018, Brussels, Belgium, October 31, 2018. Association for Computational Linguistics 2018, ISBN 978-1-948087-77-3 [contents] - [i7]Abeed Sarker, Graciela Gonzalez-Hernandez:
An unsupervised and customizable misspelling generator for mining noisy health-related text sources. CoRR abs/1806.00910 (2018) - [i6]Ari Z. Klein, Abeed Sarker, Davy Weissenbacher, Graciela Gonzalez-Hernandez:
Automatically Detecting Self-Reported Birth Defect Outcomes on Twitter for Large-scale Epidemiological Research. CoRR abs/1810.09506 (2018) - 2017
- [j21]Tasnia Tahsin, Davy Weissenbacher, Demetrius Jones-Shargani, Daniel Magee, Matteo Vaiente, Graciela Gonzalez, Matthew Scotch:
Named entity linking of geospatial and host metadata in GenBank for advancing biomedical research. Database J. Biol. Databases Curation 2017: bax093 (2017) - [c43]Ehsan Emadzadeh, Abeed Sarker, Azadeh Nikfarjam, Graciela Gonzalez-Hernandez:
Hybrid Semantic Analysis for Mapping Adverse Drug Reaction Mentions in Tweets to Medical Terminology. AMIA 2017 - [c42]Abeed Sarker, Graciela Gonzalez:
Overview of the Second Social Media Mining for Health (SMM4H) Shared Tasks at AMIA 2017. SMM4H@AMIA 2017: 43-48 - [c41]Arjun Magge, Matthew Scotch, Graciela Gonzalez:
CSaRUS-CNN at AMIA-2017 Tasks 1, 2: Under Sampled CNN for Text Classification. SMM4H@AMIA 2017: 76-78 - [c40]Ari Z. Klein, Abeed Sarker, Masoud Rouhizadeh, Karen O'Connor, Graciela Gonzalez:
Detecting Personal Medication Intake in Twitter: An Annotated Corpus and Baseline Classification System. BioNLP 2017: 136-142 - [c39]Abeed Sarker, Graciela Gonzalez:
HLP$@$UPenn at SemEval-2017 Task 4A: A simple, self-optimizing text classification system combining dense and sparse vectors. SemEval@ACL 2017: 640-643 - [e1]Abeed Sarker, Graciela Gonzalez:
Proceedings of the 2nd Social Media Mining for Health Research and Applications Workshop co-located with the American Medical Informatics Association Annual Symposium (AMIA 2017), Washington D.C., United States, November 4, 2017. CEUR Workshop Proceedings 1996, CEUR-WS.org 2017 [contents] - [i5]Pramod Bharadwaj Chandrashekar, Arjun Magge, Abeed Sarker, Graciela Gonzalez:
Social media mining for identification and exploration of health-related information from pregnant women. CoRR abs/1702.02261 (2017) - 2016
- [j20]Graciela Gonzalez, Tasnia Tahsin, Britton C. Goodale, Anna C. Greene, Casey S. Greene:
Recent Advances and Emerging Applications in Text and Data Mining for Biomedical Discovery. Briefings Bioinform. 17(1): 33-42 (2016) - [j19]Tasnia Tahsin, Davy Weissenbacher, Robert Rivera, Rachel Beard, Mari Firago, Garrick L. Wallstrom, Matthew Scotch, Graciela Gonzalez:
A high-precision rule-based extraction system for expanding geospatial metadata in GenBank records. J. Am. Medical Informatics Assoc. 23(5): 934-941 (2016) - [j18]Ioannis Korkontzelos, Azadeh Nikfarjam, Matthew Shardlow, Abeed Sarker, Sophia Ananiadou, Graciela Gonzalez-Hernandez:
Analysis of the effect of sentiment analysis on extracting adverse drug reactions from tweets and forum posts. J. Biomed. Informatics 62: 148-158 (2016) - [c38]Abeed Sarker, Graciela Gonzalez:
Data, tools and resources for mining social media drug chatter. BioTxtM@COLING 2016 2016: 99-107 - [c37]Davy Weissenbacher, Travis A. Johnson, Laura Wojtulewicz, Amylou Dueck, Dona Locke, Richard J. Caselli, Graciela Gonzalez:
Automatic Prediction of Linguistic Decline in Writings of Subjects with Degenerative Dementia. HLT-NAACL 2016: 1198-1207 - [c36]Michael J. Paul, Abeed Sarker, John S. Brownstein, Azadeh Nikfarjam, Matthew Scotch, Karen L. Smith, Graciela Gonzalez-Hernandez:
Session Introduction. PSB 2016: 468-479 - [c35]Ryan Sullivan, Abeed Sarker, Karen O'Connor, Amanda Goodin, Mark Karlsrud, Graciela Gonzalez:
Finding Potentially Unsafe Nutritional Supplements from User Reviews with Topic Modeling. PSB 2016: 528-539 - [c34]Abeed Sarker, Azadeh Nikfarjam, Graciela Gonzalez-Hernandez:
Social Media Mining Shared Task Workshop. PSB 2016: 581-592 - [c33]Abeed Sarker, Graciela Gonzalez:
DiegoLab16 at SemEval-2016 Task 4: Sentiment Analysis in Twitter using Centroids, Clusters, and Sentiment Lexicons. SemEval@NAACL-HLT 2016: 209-214 - [i4]Abbas Chokor, Abeed Sarker, Graciela Gonzalez:
Mining the Web for Pharmacovigilance: the Case Study of Duloxetine and Venlafaxine. CoRR abs/1610.02567 (2016) - 2015
- [j17]Davy Weissenbacher, Tasnia Tahsin, Rachel Beard, Mari Figaro, Robert Rivera, Matthew Scotch, Graciela Gonzalez:
Knowledge-driven geospatial location resolution for phylogeographic models of virus migration. Bioinform. 31(12): 348-356 (2015) - [j16]Azadeh Nikfarjam, Abeed Sarker, Karen O'Connor, Rachel E. Ginn, Graciela Gonzalez-Hernandez:
Pharmacovigilance from social media: mining adverse drug reaction mentions using sequence labeling with word embedding cluster features. J. Am. Medical Informatics Assoc. 22(3): 671-681 (2015) - [j15]Abeed Sarker, Graciela Gonzalez:
Portable automatic text classification for adverse drug reaction detection via multi-corpus training. J. Biomed. Informatics 53: 196-207 (2015) - [j14]Abeed Sarker, Rachel E. Ginn, Azadeh Nikfarjam, Karen O'Connor, Karen L. Smith, Swetha Jayaraman, Tejaswi Upadhaya, Graciela Gonzalez-Hernandez:
Utilizing social media data for pharmacovigilance: A review. J. Biomed. Informatics 54: 202-212 (2015) - [c32]Graciela Gonzalez, Chitta Baral, Jeff Kiefer, Suengchan Kim, Jieping Ye:
Session Introduction. Pacific Symposium on Biocomputing 2015: 80-83 - [c31]Abeed Sarker, Azadeh Nikfarjam, Davy Weissenbacher, Graciela Gonzalez-Hernandez:
DIEGOLab: An Approach for Message-level Sentiment Classification in Twitter. SemEval@NAACL-HLT 2015: 510-514 - 2014
- [j13]Ehsan Emadzadeh, Azadeh Nikfarjam, Rachel E. Ginn, Graciela Gonzalez-Hernandez:
Unsupervised gene function extraction using semantic vectors. Database J. Biol. Databases Curation 2014 (2014) - [j12]Yuqing Mao, Kimberly Van Auken, Donghui Li, Cecilia N. Arighi, Peter McQuilton, G. Thomas Hayman, Susan Tweedie, Mary L. Schaeffer, Stanley J. F. Laulederkind, Shur-Jen Wang, Julien Gobeill, Patrick Ruch, Anh Tuan Luu, Jung-Jae Kim, Jung-Hsien Chiang, Yu-De Chen, Chia-Jung Yang, Hongfang Liu, Dongqing Zhu, Yanpeng Li, Hong Yu, Ehsan Emadzadeh, Graciela Gonzalez, Jian-Ming Chen, Hong-Jie Dai, Zhiyong Lu:
Overview of the gene ontology task at BioCreative IV. Database J. Biol. Databases Curation 2014 (2014) - [c30]Karen O'Connor, Azadeh Nikfarjam, Rachel E. Ginn, Pranoti Pimpalkhute, Abeed Sarker, Karen L. Smith, Graciela Gonzalez-Hernandez:
Pharmacovigilance on Twitter? Mining Tweets for Adverse Drug Reactions. AMIA 2014 - [c29]Ryan Sullivan, Robert Yao, Randa Jarar, Jeffrey Buchhalter, Graciela Gonzalez:
Text Classification towards Detecting Misdiagnosis of an Epilepsy Syndrome in a Pediatric Population. AMIA 2014 - [c28]Tasnia Tahsin, Robert Rivera, Rachel Beard, Rob Lauder, Davy Weissenbacher, Matthew Scotch, Garrick L. Wallstrom, Graciela Gonzalez:
Natural Language Processing Methods for Enhancing Geographic Metadata for Phylogeography of Zoonotic Viruses. BioNLP@ACL 2014: 1-9 - [c27]Graciela Gonzalez, Kevin Bretonnel Cohen, Robert Leaman, Casey S. Greene, Nigam Shah, Maricel G. Kann, Jieping Ye:
Session introduction. Pacific Symposium on Biocomputing 2014: 312-315 - 2013
- [j11]Azadeh Nikfarjam, Ehsan Emadzadeh, Graciela Gonzalez-Hernandez:
Towards generating a patient's timeline: Extracting temporal relationships from clinical notes. J. Biomed. Informatics 46(6): S40-S47 (2013) - [c26]Graciela Gonzalez, Kevin Bretonnel Cohen, Casey S. Greene, Udo Hahn, Maricel G. Kann, Robert Leaman, Nigam Shah, Jieping Ye:
Session introduction. Pacific Symposium on Biocomputing 2013: 368-372 - 2012
- [j10]Siddhartha Jonnalagadda, Trevor Cohen, Stephen T. Wu, Graciela Gonzalez:
Enhancing clinical concept extraction with distributional semantics. J. Biomed. Informatics 45(1): 129-140 (2012) - [j9]Luis Tari, Phan Huy Tu, Jörg Hakenberg, Yi Chen, Tran Cao Son, Graciela Gonzalez, Chitta Baral:
Incremental Information Extraction Using Relational Databases. IEEE Trans. Knowl. Data Eng. 24(1): 86-99 (2012) - [c25]Nate Sutton, Laura Wojtulewicz, Neel Mehta, Graciela Gonzalez:
Automatic Approaches for Gene-Drug Interaction Extraction from Biomedical Text: Corpus and Comparative Evaluation. BioNLP@HLT-NAACL 2012: 214-222 - [c24]Robert Yao, Jeffrey Buchhalter, Graciela Gonzalez:
Proposed Ontology for Seizure and Epilepsy. ICBO 2012 - 2011
- [j8]Jörg Hakenberg, Martin Gerner, Maximilian Haeussler, Illés Solt, Conrad Plake, Michael Schroeder, Graciela Gonzalez, Goran Nenadic, Casey M. Bergman:
The GNAT library for local and remote gene mention normalization. Bioinform. 27(19): 2769-2771 (2011) - [j7]Martin Krallinger, Miguel Vazquez, Florian Leitner, David Salgado, Andrew Chatr-aryamontri, Andrew G. Winter, Livia Perfetto, Leonardo Briganti, Luana Licata, Marta Iannuccelli, Luisa Castagnoli, Gianni Cesareni, Mike Tyers, Gerold Schneider, Fabio Rinaldi, Robert Leaman, Graciela Gonzalez, Sérgio Matos, Sun Kim, W. John Wilbur, Luis M. Rocha, Hagit Shatkay, Ashish V. Tendulkar, Shashank Agarwal, Feifan Liu, Xinglong Wang, Rafal Rak, Keith Noto, Charles Elkan, Zhiyong Lu:
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text. BMC Bioinform. 12(S-8): S3 (2011) - [j6]Graciela Gonzalez:
Biomedical Informatics in Translational Research, Hai Hu, Richard J. Mural, Michael N. Liebman (Eds.). Artech House (2008). J. Biomed. Informatics 44(2): 370-371 (2011) - [j5]Matthew Scotch, Indra Neil Sarkar, Changjiang Mei, Robert Leaman, Kei-Hoi Cheung, Pierina Ortiz, Ashutosh Singraur, Graciela Gonzalez:
Enhancing phylogeography by improving geographical information from GenBank. J. Biomed. Informatics 44(Supplement-1): S44-S47 (2011) - [c23]Ehsan Emadzadeh, Azadeh Nikfarjam, Graciela Gonzalez-Hernandez:
Double Layered Learning for Biological Event Extraction from Text. BioNLP@ACL (Shared Task) 2011: 153-154 - [c22]Robert Yao, Graciela Gonzalez:
Applications for a Translational Biomedical Ontology Model. ICBO 2011 - [c21]Ehsan Emadzadeh, Siddhartha Jonnalagadda, Graciela Gonzalez:
Evaluating Distributional Semantic and Feature Selection for Extracting Relationships from Biological Text. ICMLA (2) 2011: 66-71 - [c20]Ryan Sullivan, Robert Leaman, Graciela Gonzalez:
The DIEGO Lab Graph Based Gene Normalization System. ICMLA (2) 2011: 78-83 - [c19]Jang Lee, Graciela Gonzalez:
Towards Integrative Gene Prioritization in Alzheimer's Disease. Pacific Symposium on Biocomputing 2011: 4-13 - [i3]Siddhartha Jonnalagadda, Graciela Gonzalez:
BioSimplify: an open source sentence simplification engine to improve recall in automatic biomedical information extraction. CoRR abs/1107.5744 (2011) - 2010
- [j4]Jörg Hakenberg, Robert Leaman, Nguyen Ha Vo, Siddhartha Jonnalagadda, Ryan Sullivan, Christopher Miller, Luis Tari, Chitta Baral, Graciela Gonzalez:
Efficient Extraction of Protein-Protein Interactions from Full-Text Articles. IEEE ACM Trans. Comput. Biol. Bioinform. 7(3): 481-494 (2010) - [c18]Robert Leaman, Laura Wojtulewicz, Ryan Sullivan, Annie Skariah, Jian Yang, Graciela Gonzalez:
Towards Internet-Age Pharmacovigilance: Extracting Adverse Drug Reactions from User Posts in Health-Related Social Networks. BioNLP@ACL 2010: 117-125 - [c17]Siddhartha Jonnalagadda, Robert Leaman, Trevor Cohen, Graciela Gonzalez:
A Distributional Semantics Approach to Simultaneous Recognition of Multiple Classes of Named Entities. CICLing 2010: 224-235 - [c16]Luis Tari, Phan Huy Tu, Jörg Hakenberg, Yi Chen, Tran Cao Son, Graciela Gonzalez, Chitta Baral:
GenerIE: Information extraction using database queries. ICDE 2010: 1121-1124 - [i2]Siddhartha Jonnalagadda, Graciela Gonzalez:
Sentence Simplification Aids Protein-Protein Interaction Extraction. CoRR abs/1001.4273 (2010) - [i1]Siddhartha Jonnalagadda, Luis Tari, Jörg Hakenberg, Chitta Baral, Graciela Gonzalez:
Towards Effective Sentence Simplification for Automatic Processing of Biomedical Text. CoRR abs/1001.4277 (2010)
2000 – 2009
- 2009
- [c15]Jörg Hakenberg, Illés Solt, Domonkos Tikk, Luis Tari, Astrid Rheinländer, Quang Long Nguyen, Graciela Gonzalez, Ulf Leser:
Molecular event extraction from Link Grammar parse trees. BioNLP@HLT-NAACL (Shared Task) 2009: 86-94 - [c14]Siddhartha Jonnalagadda, Luis Tari, Jörg Hakenberg, Chitta Baral, Graciela Gonzalez:
Towards Effective Sentence Simplification for Automatic Processing of Biomedical Text. HLT-NAACL (Short Papers) 2009: 177-180 - [c13]Luis Tari, Jörg Hakenberg, Graciela Gonzalez, Chitta Baral:
Querying Parse Tree Database of Medline Text to Synthesize User-Specific Biomolecular Networks. Pacific Symposium on Biocomputing 2009: 87-98 - 2008
- [c12]Jörg Hakenberg, Conrad Plake, Robert Leaman, Michael Schroeder, Graciela Gonzalez:
Inter-species normalization of gene mentions with GNAT. ECCB 2008: 126-132 - [c11]Robert Leaman, Graciela Gonzalez:
BANNER: An Executable Survey of Advances in Biomedical Named Entity Recognition. Pacific Symposium on Biocomputing 2008: 652-663 - 2007
- [c10]Graciela Gonzalez, Janaka Balasooriya:
Web Service Orchestration for Bioinformatics Systems: Challenges and Current Workflow Definition Approaches. ICWS 2007: 1226-1227 - [c9]Graciela Gonzalez, Juan C. Uribe, Luis Tari, Colleen Brophy, Chitta Baral:
Mining Gene-Disease Relationships from Biomedical Literature: Weighting Proteinprotein Interactions and Connectivity. Pacific Symposium on Biocomputing 2007: 28-39 - [c8]Luis Tari, Phan Huy Tu, Barry Lumpkin, Robert Leaman, Graciela Gonzalez, Chitta Baral:
Passage Relevancy Through Semantic Relatedness. TREC 2007 - 2006
- [c7]Graciela Gonzalez:
A systematic approach to active and cooperative learning in CS1 and its effects on CS2. SIGCSE 2006: 133-137 - [c6]Luis Tari, Graciela Gonzalez, Robert Leaman, Shawn Nikkila, Ryan Wendt, Chitta Baral:
ASU at TREC 2006 Genomics Track. TREC 2006 - 2005
- [j3]Graciela Gonzalez, Chitta Baral, Michael Gelfond:
Alan: An Action Language For Modelling Non-Markovian Domains. Stud Logica 79(1): 115-134 (2005) - [c5]Lian Yu, Syed Toufeeq Ahmed, Graciela Gonzalez, Brendan Logsdon, Mutsumi Nakamura, Shawn Nikkila, Kalpesh Shah, Luis Tari, Ryan Wendt, Amanda Zeigler, Chitta Baral:
Genomic Information Retrieval Through Selective Extraction and Tagging by the ASU-BioAL Group. TREC 2005 - 2002
- [c4]Graciela Gonzalez, Chitta Baral, Peter A. Cooper:
Modeling Multimedia Displays Using Action Based Temporal Logic. VDB 2002: 141-155
1990 – 1999
- 1999
- [c3]Chitta Baral, Graciela Gonzalez:
Specifying Generic Multimedia 3D Visualizations and Temporal Presentations from Database Queries. ICMCS, Vol. 1 1999: 550-555 - 1998
- [j2]Chitta Baral, Graciela Gonzalez, Tran Cao Son:
Conceptual Modeling and Querying in Multimedia Databases. Multim. Tools Appl. 7(1/2): 37-66 (1998) - [j1]Graciela Gonzalez:
Intervals Help to Design an Imaging System. Reliab. Comput. 4(1): 103-104 (1998) - [c2]Chitta Baral, Graciela Gonzalez, Tran Cao Son:
Design and Implementation of Display Specification for Multimedia Answers. ICDE 1998: 558-565 - [c1]Chitta Baral, Graciela Gonzalez, Amarendra Nandigam:
SQL+D: Extended Display Capabilities for Multimedia Database Queries. ACM Multimedia 1998: 109-114
Coauthor Index
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