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Sergey Knyazev
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2020 – today
- 2021
- [j7]Sergey Knyazev, Lauren Hughes, Pavel Skums, Alexander Zelikovsky:
Epidemiological data analysis of viral quasispecies in the next-generation sequencing era. Briefings Bioinform. 22(1): 96-108 (2021) - [j6]Filipp Rondel, Roya Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I. Mandoiu, Bogdan Pasaniuc, Yuri Porozov, Alexander Zelikovsky:
Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data. J. Comput. Biol. 28(8): 842-855 (2021) - [j5]Andrew Melnyk, Fatemeh Mohebbi, Sergey Knyazev, Bikram Sahoo, Roya Hosseini, Pavel Skums, Alex Zelikovsky, Murray Patterson:
From Alpha to Zeta: Identifying Variants and Subtypes of SARS-CoV-2 Via Clustering. J. Comput. Biol. 28(11): 1113-1129 (2021) - [j4]Daniel Novikov, Sergey Knyazev, Mark Grinshpon, Pelin B. Icer, Pavel Skums, Alex Zelikovsky:
Scalable Reconstruction of SARS-CoV-2 Phylogeny with Recurrent Mutations. J. Comput. Biol. 28(11): 1130-1141 (2021) - [j3]Ellsworth M. Campbell, Anthony Boyles, Anupama Shankar, Jay Kim, Sergey Knyazev, Roxana Cintron, William M. Switzer:
MicrobeTrace: Retooling molecular epidemiology for rapid public health response. PLoS Comput. Biol. 17(9) (2021) - [c7]Sergey Knyazev, Daniel Novikov, Mark Grinshpon, Harman Singh, Ram Ayyala, Varuni Sarwal, Roya Hosseini, Pelin Icer Baykal, Pavel Skums, Ellsworth Campbell, Serghei Mangul, Alex Zelikovsky:
A Novel Network Representation of SARS-CoV-2 Sequencing Data. ISBRA 2021: 165-175 - 2020
- [c6]Keith Mitchell, Jaqueline J. Brito, Igor Mandric, Qiaozhen Wu, Sergey Knyazev, Sei Chang, Lana S. Martin, Aaron Karlsberg, Ekaterina Gerasimov, Russell Littman, Brian L. Hill, Nicholas C. Wu, Harry (Taegyun) Yang, Kevin Hsieh, Linus Chen, Eli Littman, Taylor Shabani, German Enik, Douglas Yao, Ren Sun, Jan Schroeder, Eleazar Eskin, Alex Zelikovsky, Pavel Skums, Mihai Pop, Serghei Mangul:
Benchmarking of computational error-correction methods for next-generation sequencing data. BCB 2020: 63:1 - [c5]Andrew Melnyk, Fatemeh Mohebbi, Sergey Knyazev, Bikram Sahoo, Roya Hosseini, Pavel Skums, Alex Zelikovsky, Murray Patterson:
Clustering Based Identification of SARS-CoV-2 Subtypes. ICCABS 2020: 127-141 - [c4]Filipp Rondel, Akram Sadat Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I. Mandoiu, Bogdan Pasaniuc, Alex Zelikovsky:
Estimating Enzyme Participation in Metabolic Pathways for Microbial Communities from RNA-seq Data. ISBRA 2020: 335-343
2010 – 2019
- 2018
- [j2]Pavel Skums, Alex Zelikovsky, Rahul Singh, Walker Gussler, Zoya Dimitrova, Sergey Knyazev, Igor Mandric, Sumathi Ramachandran, David S. Campo, Deeptanshu Jha, Leonid Bunimovich, Elizabeth Costenbader, Connie Sexton, Siobhán O'Connor, Guo-liang Xia, Yury Khudyakov:
QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data. Bioinform. 34(1): 163-170 (2018) - [j1]Igor Mandric, Sergey Knyazev, Alex Zelikovsky:
Repeat-aware evaluation of scaffolding tools. Bioinform. 34(15): 2530-2537 (2018) - 2017
- [c3]Igor Mandric, Sergey Knyazev, Cory Padilla, Frank Stewart, Ion I. Mandoiu, Alex Zelikovsky:
Metabolic Analysis of Metatranscriptomic Data from Planktonic Communities. ISBRA 2017: 396-402 - 2014
- [c2]Maxim Buzdalov, Sergey Knyazev, Yuri Porozov:
Protein Conformation Motion Modeling Using Sep-CMA-ES. ICMLA 2014: 35-40 - [c1]Sergey Knyazev, Sergey Tarakanov, Vladimir Kuznetsov, Yuri Porozov, Yevgeni Koucheryavy, Eugene O. Stepanov:
Coarse-grained model of protein interaction for bio-inspired nano-communication. ICUMT 2014: 260-262
Coauthor Index
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