Journal of the American Medical Informatics Association, Volume 22

Volume 22, Number 1, January 2015

Highlights

• 
  Lucila Ohno-Machado:
  Highlights. 1

Perspectives

• 
  Rupa Valdez, Richard J. Holden, Laurie L. Novak, Tiffany C. Veinot:
  Transforming consumer health informatics through a patient work framework: connecting patients to context. 2-10
• 
  Michael A. Rosen, Aaron S. Dietz, Ting Yang, Carey E. Priebe, Peter J. Pronovost:
  An integrative framework for sensor-based measurement of teamwork in healthcare. 11-18

Brief Communication

• 
  Andrew D. Boyd, Young Min Yang, Jianrong Li, Colleen Kenost, Mike D. Burton, Bryan Becker, Yves A. Lussier:
  Challenges and remediation for Patient Safety Indicators in the transition to ICD-10-CM. 19-28
• 
  Nasser F. BinDhim, Ahmed M. Shaman, Lyndal J. Trevena, Mada H. Basyouni, Lisa G. Pont, Tariq M. Alhawassi:
  Depression screening via a smartphone app: cross-country user characteristics and feasibility. 29-34
• 
  Maria K. Wolters, Christine Johnson, Pauline Campbell, Christine DePlacido, Brian McKinstry:
  Can older people remember medication reminders presented using synthetic speech? 35-42

Research and Applications

• 
  Charles P. Friedman, Joshua C. Rubin, Jeffrey S. Brown, Melinda Buntin, Milton Corn, Lynn Etheredge, Carl A. Gunter, Mark A. Musen, Richard Platt, William W. Stead, Kevin Sullivan, Douglas Van Houweling:
  Toward a science of learning systems: a research agenda for the high-functioning Learning Health System. 43-50
• 
  Ye Li, Wei Wang, Qiong Wu, Michelle Helena van Velthoven, Li Chen, Xiaozhen Du, Yanfeng Zhang, Igor Rudan, Josip Car:
  Increasing the response rate of text messaging data collection: a delayed randomized controlled trial. 51-64
• 
  Chao Pang, Dennis Hendriksen, Martijn Dijkstra, K. Joeri van der Velde, Joël Kuiper, Hans L. Hillege, Morris A. Swertz:
  BiobankConnect: software to rapidly connect data elements for pooled analysis across biobanks using ontological and lexical indexing. 65-75
• 
  Rémy Choquet, Meriem Maaroufi, Albane de Carrara, Claude Messiaen, Emmanuel Luigi, Paul Landais:
  A methodology for a minimum data set for rare diseases to support national centers of excellence for healthcare and research. 76-85
• 
  Xavier Moles Lopez, Paul Barbot, Yves-Rémi Van Eycke, Laurine Verset, Anne-Laure Trépant, Lionel Larbanoix, Isabelle Salmon, Christine Decaestecker:
  Registration of whole immunohistochemical slide images: an efficient way to characterize biomarker colocalization. 86-99
• 
  Yongan Zhao, XiaoFeng Wang, Xiaoqian Jiang, Lucila Ohno-Machado, Haixu Tang:
  Choosing blindly but wisely: differentially private solicitation of DNA datasets for disease marker discovery. 100-108
• 
  Dokyoon Kim, Je-Gun Joung, Kyung-Ah Sohn, Hyunjung Shin, Yu Rang Park, Marylyn D. Ritchie, Ju Han Kim:
  Knowledge boosting: a graph-based integration approach with multi-omics data and genomic knowledge for cancer clinical outcome prediction. 109-120
• 
  Kenneth Jung, Paea LePendu, Srinivasan Iyer, Anna Bauer-Mehren, Bethany Percha, Nigam H. Shah:
  Functional evaluation of out-of-the-box text-mining tools for data-mining tasks. 121-131
• 
  Ching-Heng Lin, Nai-Yuan Wu, Wei-Shao Lai, Der-Ming Liou:
  Comparison of a semi-automatic annotation tool and a natural language processing application for the generation of clinical statement entries. 132-142
• 
  Sameer Pradhan, Noémie Elhadad, Brett R. South, David Martínez, Lee M. Christensen, Amy Vogel, Hanna Suominen, Wendy W. Chapman, Guergana Savova:
  Evaluating the state of the art in disorder recognition and normalization of the clinical narrative. 143-154
• 
  Christian M. Rochefort, Aman Verma, Tewodros Eguale, Todd C. Lee, David L. Buckeridge:
  A novel method of adverse event detection can accurately identify venous thromboembolisms (VTEs) from narrative electronic health record data. 155-165
• 
  Yizhao Ni, Stephanie Kennebeck, Judith W. Dexheimer, Constance M. McAneney, Huaxiu Tang, Todd Lingren, Qi Li, Haijun Zhai, Imre Solti:
  Automated clinical trial eligibility prescreening: increasing the efficiency of patient identification for clinical trials in the emergency department. 166-178
• 
  Hua Xu, Melinda C. Aldrich, Qingxia Chen, Hongfang Liu, Neeraja B. Peterson, Qi Dai, Mia A. Levy, Anushi Shah, Han Xue, Xiaoyang Ruan, Min Jiang, Ying Li, Jamii St Julien, Jeremy L. Warner, Carol Friedman, Dan M. Roden, Joshua C. Denny:
  Validating drug repurposing signals using electronic health records: a case study of metformin associated with reduced cancer mortality. 179-191
• 
  Teresa Taft, Leslie Lenert, Farrant Sakaguchi, Gregory Stoddard, Caroline Milne:
  Effects of electronic health record use on the exam room communication skills of resident physicians: a randomized within-subjects study. 192-198
• 
  Harry B. Burke, Laura L. Sessums, Albert Hoang, Dorothy Becher, Paul A. Fontelo, Fang Liu, Mark Stephens, Louis N. Pangaro, Patrick O'Malley, Nancy S. Baxi, Christopher W. Bunt, Vincent F. Capaldi, Julie M. Chen, Barbara A. Cooper, David A. Djuric, Joshua A. Hodge, Shawn Kane, Charles Magee, Zizette R. Makary, Renee M. Mallory, Thomas Miller, Adam Saperstein, Jessica Servey, Ronald W. Gimbel:
  Electronic health records improve clinical note quality. 199-205
• 
  Jamie J. Coleman, James Hodson, Sarah K. Thomas, Hannah L. Brooks, Robin E. Ferner:
  Temporal and other factors that influence the time doctors take to prescribe using an electronic prescribing system. 206-212
• 
  Susan Wells, Ronen Rozenblum, Andrea Park, Marie Dunn, David W. Bates:
  Organizational strategies for promoting patient and provider uptake of personal health records. 213-222
• 
  Kensaku Kawamoto, Cary J. Martin, Kip Williams, Ming-Chieh Tu, Charlton G. Park, Cheri Hunter, Catherine J. Staes, Bruce E. Bray, Vikrant G. Deshmukh, Reid A. Holbrook, Scott J. Morris, Matthew B. Fedderson, Amy Sletta, James Turnbull, Sean J. Mulvihill, Gordon L. Crabtree, David E. Entwistle, Quinn L. McKenna, Michael B. Strong, Robert C. Pendleton, Vivian S. Lee:
  Value Driven Outcomes (VDO): a pragmatic, modular, and extensible software framework for understanding and improving health care costs and outcomes. 223-235

Reviews

• 
  Jakob Holstiege, Tim Mathes, Dawid Pieper:
  Effects of computer-aided clinical decision support systems in improving antibiotic prescribing by primary care providers: a systematic review. 236-242
• 
  Liliana Laranjo, Amaël Arguel, Ana Luísa Neves, Aideen M. Gallagher, Ruth Kaplan, Nathan J. Mortimer, Guilherme A. Mendes, Annie Y. S. Lau:
  The influence of social networking sites on health behavior change: a systematic review and meta-analysis. 243-256

Messages from AMIA

• 
  Douglas B. Fridsma:
  A familiar home, a new beginning, a bright future. 257

Volume 22, Number 2, March 2015

Highlights

• 
  Lucila Ohno-Machado:
  Highlights. 259

Focus on Visualization

• 
  Jesus J. Caban, David Gotz:
  Visual analytics in healthcare - opportunities and research challenges. 260-262
• 
  Jamie S. Hirsch, Jessica S. Tanenbaum, Sharon Lipsky Gorman, Connie Liu, Eric Schmitz, Dritan Hashorva, Artem Ervits, David K. Vawdrey, Marc Sturm, Noémie Elhadad:
  HARVEST, a longitudinal patient record summarizer. 263-274
• 
  Denis Klimov, Alexander Shknevsky, Yuval Shahar:
  Exploration of patterns predicting renal damage in patients with diabetes type II using a visual temporal analysis laboratory. 275-289
• 
  Chih-Wei Huang, Syed Abdul Shabbir, Wen-Shan Jian, Usman Iqbal, Phung-Anh (Alex) Nguyen, Peisan Lee, Shen-Hsien Lin, Wen-Ding Hsu, Mai-Szu Wu, Chun-Fu Wang, Kwan-Liu Ma, Yu-Chuan (Jack) Li:
  A novel tool for visualizing chronic kidney disease associated polymorbidity: a 13-year cohort study in Taiwan. 290-298
• 
  Nicholas D. Soulakis, Matthew B. Carson, Young Ji Lee, Daniel H. Schneider, Connor T. Skeehan, Denise M. Scholtens:
  Visualizing collaborative electronic health record usage for hospitalized patients with heart failure. 299-311
• 
  Raj M. Ratwani, Allan Fong:
  'Connecting the dots': leveraging visual analytics to make sense of patient safety event reports. 312-317
• 
  Rahul C. Basole, Mark L. Braunstein, Vikas Kumar, Hyunwoo Park, Minsuk Kahng, Duen Horng (Polo) Chau, Acar Tamersoy, Daniel A. Hirsh, Nicoleta Serban, James Bost, Burton Lesnick, Beth L. Schissel, Michael Thompson:
  Understanding variations in pediatric asthma care processes in the emergency department using visual analytics. 318-323
• 
  Jeremy L. Warner, Joshua C. Denny, David A. Kreda, Gil Alterovitz:
  Seeing the forest through the trees: uncovering phenomic complexity through interactive network visualization. 324-329
• 
  Vivian West, David Borland, W. Ed Hammond:
  Innovative information visualization of electronic health record data: a systematic review. 330-339

Research and Applications

• 
  Catherine Plaisant, Johnny Wu, A. Zachary Hettinger, Seth Powsner, Ben Shneiderman:
  Novel user interface design for medication reconciliation: an evaluation of Twinlist. 340-349
• 
  R. Scott Evans, Kathryn Gibb Kuttler, Kathy J. Simpson, Stephen Howe, Peter F. Crossno, Kyle V. Johnson, Misty N. Schreiner, James F. Lloyd, William H. Tettelbach, Roger K. Keddington, Alden Tanner, Chelbi Wilde, Terry P. Clemmer:
  Automated detection of physiologic deterioration in hospitalized patients. 350-360
• 
  Allan F. Simpao, Luis M. Ahumada, Bimal R. Desai, Christopher P. Bonafide, Jorge A. Gálvez, Mohamed A. Rehman, Abbas F. Jawad, Krisha L. Palma, Eric D. Shelov:
  Optimization of drug-drug interaction alert rules in a pediatric hospital's electronic health record system using a visual analytics dashboard. 361-369
• 
  Jeffrey G. Klann, Michael Mendis, Lori C. Phillips, Alyssa P. Goodson, Beatriz H. Rocha, Howard S. Goldberg, Nich Wattanasin, Shawn N. Murphy:
  Taking advantage of continuity of care documents to populate a research repository. 370-379
• 
  Kim M. Nazi, Carolyn L. Turvey, Dawn M. Klein, Timothy P. Hogan, Susan S. Woods:
  VA OpenNotes: exploring the experiences of early patient adopters with access to clinical notes. 380-389
• 
  Mari Nakamura, Marvin B. Harper, Allan V. Castro, Feliciano B. Yu Jr., Ashish K. Jha:
  Impact of the meaningful use incentive program on electronic health record adoption by US children's hospitals. 390-398
• 
  Brian E. Whitacre:
  Rural EMR adoption rates overtake those in urban areas. 399-408
• 
  Andy Amster, Joseph Jentzsch, Ham Pasupuleti, K. G. Subramanian:
  Completeness, accuracy, and computability of National Quality Forum-specified eMeasures. 409-416
• 
  Robert W. Turer, Theresa D. Zuckowsky, H. Jennifer Causey, S. Trent Rosenbloom:
  ICD-10-CM Crosswalks in the primary care setting: assessing reliability of the GEMs and reimbursement mappings. 417-425
• 
  Ann S. O'Malley, Kevin Draper, Rebecca Gourevitch, Dori A. Cross, Sarah Hudson Scholle:
  Electronic health records and support for primary care teamwork. 426-434
• 
  Joshua R. Vest, Lisa M. Kern, Michael D. Silver, Rainu Kaushal:
  The potential for community-based health information exchange systems to reduce hospital readmissions. 435-442
• 
  Michael J. Howley, Edgar Y. Chou, Nancy Hansen, Prudence W. Dalrymple:
  The long-term financial impact of electronic health record implementation. 443-452

Brief Communication

• 
  Lisa M. Kern, Alison Edwards, Michelle Pichardo, Rainu Kaushal:
  Electronic health records and health care quality over time in a federally qualified health center. 453-458

Perspectives

• 
  Loren Riskin, Ross Koppel, Daniel Riskin:
  Re-examining health IT policy: what will it take to derive value from our investment? 459-464
• 
  Ross Koppel, Christoph U. Lehmann:
  Implications of an emerging EHR monoculture for hospitals and healthcare systems. 465-471
• 
  Dean F. Sittig, David C. Classen, Hardeep Singh:
  Patient safety goals for the proposed Federal Health Information Technology Safety Center. 472-478

Review

• 
  Fleur Fritz, Binyam Tilahun, Martin Dugas:
  Success criteria for electronic medical record implementations in low-resource settings: a systematic review. 479-488

Messages from AMIA

• 
  Douglas B. Fridsma:
  Update on informatics-focused certification and accreditation activities. 489-490

Volume 22, Number e1, April 2015

Highlights

• 
  Lucila Ohno-Machado:
  Special online issue focusing on patients and caregivers. e1

Perspectives

• 
  Patti Flatley Brennan, Rupa Valdez, Gregory L. Alexander, Shifali Arora, Elmer V. Bernstam, Margo Edmunds, Nikolai Kirienko, Ross D. Martin, Ida Sim, Diane J. Skiba, S. Trent Rosenbloom:
  Patient-centered care, collaboration, communication, and coordination: a report from AMIA's 2013 Policy Meeting. e2-e6
• 
  Ajit A. Dhavle, Michael T. Rupp:
  Towards creating the perfect electronic prescription. e7-e12
• 
  Gaurav Dhiman, Kyle T. Amber, Kenneth W. Goodman:
  Comparative outcome studies of clinical decision support software: limitations to the practice of evidence-based system acquisition. e13-e20

Brief Communication

• 
  Atsushi Sorita, J. Martijn Bos, Bruce W. Morlan, Robert F. Tarrell, Michael J. Ackerman, Pedro J. Caraballo:
  Impact of clinical decision support preventing the use of QT-prolonging medications for patients at risk for torsade de pointes. e21-e27
• 
  Ali Sunyaev, Tobias Dehling, Patrick L. Taylor, Kenneth D. Mandl:
  Availability and quality of mobile health app privacy policies. e28-e33
• 
  Ellyn Marder, Katie Garman, Timothy F. Jones, John Dunn, Stephen Jones:
  Assessment of administrative claims data for public health reporting of Salmonella in Tennessee. e34-e38
• 
  Crystale Purvis Cooper, Cynthia A. Gelb, Alexandra N. Vaughn, Jenny Smuland, Alexandra G. Hughes, Nikki A. Hawkins:
  Directing the public to evidence-based online content. e39-e41
• 
  Rahul Banerjee, Paul George, Cedric Priebe, Eric Alper:
  Medical student awareness of and interest in clinical informatics. e42-e47

Research and Applications

• 
  Hanna Suominen, Maree Johnson, Liyuan Zhou, Paula Sanchez, Raul Sirel, Jim Basilakis, Leif Hanlen, Dominique Estival, Linda Dawson, Barbara Kelly:
  Capturing patient information at nursing shift changes: methodological evaluation of speech recognition and information extraction. e48-e66
• 
  Elizabeth S. Chen, Elizabeth W. Carter, Tamara Winden, Indra Neil Sarkar, Yan Wang, Genevieve B. Melton:
  Multi-source development of an integrated model for family health history. e67-e80
• 
  Selen Bozkurt, Jafi A. Lipson, Utku Senol, Daniel L. Rubin:
  Automatic abstraction of imaging observations with their characteristics from mammography reports. e81-e92
• 
  Lori L. Popejoy, Mohammed Khalilia, Mihail Popescu, Colleen Galambos, Vanessa Lyons, Marilyn Rantz, Lanis Hicks, Frank Stetzer:
  Quantifying care coordination using natural language processing and domain-specific ontology. e93-e103
• 
  Starley B. Shade, Wayne T. Steward, Kimberly A. Koester, Deepalika Chakravarty, Janet J. Myers:
  Health information technology interventions enhance care completion, engagement in HIV care and treatment, and viral suppression among HIV-infected patients in publicly funded settings. e104-e111
• 
  Gabrielle M. Turner-McGrievy, Elina Helander, Kirsikka Kaipainen, Jose Maria Perez-Macias, Ilkka Korhonen:
  The use of crowdsourcing for dietary self-monitoring: crowdsourced ratings of food pictures are comparable to ratings by trained observers. e112-e119
• 
  Jeffrey Duncan, Scott P. Narus, Stephen Clyde, Karen Eilbeck, Sidney N. Thornton, Catherine J. Staes:
  Birth of identity: understanding changes to birth certificates and their value for identity resolution. e120-e129
• 
  Celeste Campos-Castillo, Denise L. Anthony:
  The double-edged sword of electronic health records: implications for patient disclosure. e130-e140
• 
  Riccardo Miotto, Chunhua Weng:
  Case-based reasoning using electronic health records efficiently identifies eligible patients for clinical trials. e141-e150
• 
  Chen Lin, Elizabeth W. Karlson, Dmitriy Dligach, Monica P. Ramirez, Timothy A. Miller, Huan Mo, Natalie S. Braggs, Andrew Cagan, Vivian S. Gainer, Joshua C. Denny, Guergana K. Savova:
  Automatic identification of methotrexate-induced liver toxicity in patients with rheumatoid arthritis from the electronic medical record. e151-e161
• 
  Cosmin Adrian Bejan, Wei-Qi Wei, Joshua C. Denny:
  Assessing the role of a medication-indication resource in the treatment relation extraction from clinical text. e162-e176

Reviews

• 
  Niraj Mistry, Arun Keepanasseril, Nancy L. Wilczynski, Robby Nieuwlaat, Manthan Ravall, R. Brian Haynes:
  Technology-mediated interventions for enhancing medication adherence. e177-e193
• 
  Chunling Hu, Simon Kung, Teresa A. Rummans, Matthew M. Clark, Maria I. Lapid:
  Reducing caregiver stress with internet-based interventions: a systematic review of open-label and randomized controlled trials. e194-e209

Correspondence

• 
  Sara Marceglia, Paul A. Fontelo, Michael J. Ackerman:
  Transforming consumer health informatics: connecting CHI applications to the health-IT ecosystem. e210-e212
• 
  Rupa Valdez, Richard J. Holden, Laurie L. Novak, Tiffany C. Veinot:
  Technical infrastructure implications of the patient work framework. e213-e215
• 
  Rebecca Randell, Joanne Greenhalgh, Dawn Dowding:
  Using realist reviews to understand how health IT works, for whom, and in what circumstances. e216-e217
• 
  Terese Otte-Trojel, Antoinette de Bont, Thomas G. Rundall, Joris van de Klundert:
  Response to Randell et al. "Using realist reviews to understand how health IT works, for whom, and in what circumstances". e218
• 
  David A. Hanauer, Kai Zheng:
  Paper versus EHR: simplistic comparisons may not capture current reality. e219-e220
• 
  Leslie A. Lenert, Teresa Taft:
  Careful experiments advance the science of informatics. e221

Volume 22, Number 3, May 2015

Highlights

• 
  Lucila Ohno-Machado:
  A journal's role in resource sharing and reproducibility. 491

Special Focus on Standards

• 
  Rachel L. Richesson, Christopher G. Chute:
  Health information technology data standards get down to business: maturation within domains and the emergence of interoperability. 492-494
• 
  Eric W. Deutsch, Juan P. Albar, Pierre-Alain Binz, Martin Eisenacher, Andrew R. Jones, Gerhard Mayer, Gilbert S. Omenn, Sandra E. Orchard, Juan Antonio Vizcaíno, Henning Hermjakob:
  Development of data representation standards by the human proteome organization proteomics standards initiative. 495-506
• 
  Christopher Ochs, James Geller, Yehoshua Perl, Yan Chen, Junchuan Xu, Hua Min, James T. Case, Zhi Wei:
  Scalable quality assurance for large SNOMED CT hierarchies using subject-based subtaxonomies. 507-518
• 
  Guilherme Del Fiol, Barbara Insley Crouch, Mollie R. Cummins:
  Data standards to support health information exchange between poison control centers and emergency departments. 519-528
• 
  James C. McClay, Peter J. Park, Mark G. Janczewski, Laura Heermann Langford:
  Standard for improving emergency information interoperability: the HL7 data elements for emergency department systems. 529-535
• 
  María Del Carmen Legaz-García, Marcos Menárguez Tortosa, Jesualdo Tomás Fernández-Breis, Christopher G. Chute, Cui Tao:
  Transformation of standardized clinical models based on OWL technologies: from CEM to OpenEHR archetypes. 536-544
• 
  Marcelline R. Harris, Laura Heermann Langford, Holly Miller, Mary L. Hook, Patricia C. Dykes, Susan Matney:
  Harmonizing and extending standards from a domain-specific and bottom-up approach: an example from development through use in clinical applications. 545-552
• 
  Erica A. Voss, Rupa Makadia, Amy Matcho, Qianli Ma, Chris Knoll, Martijn J. Schuemie, Frank J. DeFalco, Ajit Londhe, Vivienne J. Zhu, Patrick B. Ryan:
  Feasibility and utility of applications of the common data model to multiple, disparate observational health databases. 553-564
• 
  Catalina Martínez-Costa, Ronald Cornet, Daniel Karlsson, Stefan Schulz, Dipak Kalra:
  Semantic enrichment of clinical models towards semantic interoperability. The heart failure summary use case. 565-576
• 
  Jeremy L. Warner, Suzanne E. Maddux, Kevin S. Hughes, John C. Krauss, Peter Paul Yu, Lawrence N. Shulman, Deborah K. Mayer, Mike Hogarth, Mark Shafarman, Allison Stover Fiscalini, Laura Esserman, Liora Alschuler, George A. Koromia, Zabrina Gonzaga, Edward P. Ambinder:
  Development, implementation, and initial evaluation of a foundational open interoperability standard for oncology treatment planning and summarization. 577-586
• 
  Carlos Marcos Lagunar, Arturo González-Ferrer, Mor Peleg, Carlos Cavero Barca:
  Solving the interoperability challenge of a distributed complex patient guidance system: a data integrator based on HL7's Virtual Medical Record standard. 587-599
• 
  Bonnie L. Westra, Gail E. Latimer, Susan Matney, Jung In Park, Joyce Sensmeier, Roy L. Simpson, Mary Jo Swanson, Judith J. Warren, Connie White-Delaney:
  A national action plan for sharable and comparable nursing data to support practice and translational research for transforming health care. 600-607
• 
  Marilyn Chow, Murielle S. Beene, Ann O'Brien, Patricia Greim, Tim Cromwell, Donna DuLong, Diane Bedecarré:
  A nursing information model process for interoperability. 608-614
• 
  Sripriya Rajamani, Elizabeth S. Chen, Mari E. Akre, Yan Wang, Genevieve B. Melton:
  Assessing the adequacy of the HL7/LOINC Document Ontology Role axis. 615-620
• 
  Jamalynne Deckard, Clement J. McDonald, Daniel J. Vreeman:
  Supporting interoperability of genetic data with LOINC. 621-627

Research and Applications

• 
  Christopher Ochs, James Geller, Yehoshua Perl, Yan Chen, Ankur Agrawal, James T. Case, George Hripcsak:
  A tribal abstraction network for SNOMED CT target hierarchies without attribute relationships. 628-639
• 
  Jonathan M. Mortensen, Evan P. Minty, Michael Januszyk, Timothy E. Sweeney, Alan L. Rector, Natalya Fridman Noy, Mark A. Musen:
  Using the wisdom of the crowds to find critical errors in biomedical ontologies: a study of SNOMED CT. 640-648
• 
  Kin Wah Fung, Julia Xu:
  An exploration of the properties of the CORE problem list subset and how it facilitates the implementation of SNOMED CT. 649-658
• 
  F. Phil Cartagena, Molly Schaeffer, Dorothy Rifai, Victoria Doroshenko, Howard S. Goldberg:
  Leveraging the NLM map from SNOMED CT to ICD-10-CM to facilitate adoption of ICD-10-CM. 659-670
• 
  Azadeh Nikfarjam, Abeed Sarker, Karen O'Connor, Rachel E. Ginn, Graciela Gonzalez-Hernandez:
  Pharmacovigilance from social media: mining adverse drug reaction mentions using sequence labeling with word embedding cluster features. 671-681
• 
  John Zech, Gregg Husk, Thomas Moore, Gilad J. Kuperman, Jason S. Shapiro:
  Identifying homelessness using health information exchange data. 682-687
• 
  Noémie Savard, Lucie Bédard, Robert Allard, David L. Buckeridge:
  Using age, triage score, and disposition data from emergency department electronic records to improve Influenza-like illness surveillance. 688-696
• 
  Sarah A. Collins, Dana Alexander, Jacqueline A. Moss:
  Nursing domain of CI governance: recommendations for health IT adoption and optimization. 697-706
• 
  Aaron M. Cohen, Neil R. Smalheiser, Marian S. McDonagh, Clement T. Yu, Clive E. Adams, John M. Davis, Philip S. Yu:
  Automated confidence ranked classification of randomized controlled trial articles: an aid to evidence-based medicine. 707-717
• 
  Patricia J. Holahan, Blake J. Lesselroth, Kathleen Adams, Kai Wang, Victoria Church:
  Beyond technology acceptance to effective technology use: a parsimonious and actionable model. 718-729

Brief Communication

• 
  Andrew D. Boyd, Jianrong John Li, Colleen Kenost, Binoy Joese, Young Min Yang, Olympia A. Kalagidis, Ilir Zenku, Donald Saner, Neil Bahroos, Yves A. Lussier:
  Metrics and tools for consistent cohort discovery and financial analyses post-transition to ICD-10-CM. 730-737

Perspective

• 
  Dixie B. Baker, Jonathan B. Perlin, John D. Halamka:
  Evaluating and classifying the readiness of technology specifications for national standardization. 738-743

Messages from AMIA

• 
  Douglas B. Fridsma:
  AMIA - Setting the Standard. 744-745

Volume 22, Number 4, July 2015

Highlights

• 
  Lucila Ohno-Machado:
  Tailoring informatics interventions to patients and healthcare providers. 747

Research and Applications

• 
  Yi Yvonne Zhou, Wendy M. Leith, Hui Li, Jeffrey O. Tom:
  Personal health record use for children and health care utilization: propensity score-matched cohort analysis. 748-754
• 
  Jeremy Steglitz, Mary Sommers, Mary R. Talen, Louise K. Thornton, Bonnie Spring:
  Evaluation of an electronic health record-supported obesity management protocol implemented in a community health center: a cautionary note. 755-763
• 
  Pieter J. Helmons, Bas O. Suijkerbuijk, Prashant V. Nannan Panday, Jos G. W. Kosterink:
  Drug-drug interaction checking assisted by clinical decision support: a return on investment analysis. 764-772
• 
  Robyn Tamblyn, Pierre Ernst, Nancy Winslade, Allen Huang, Roland M. Grad, Robert W. Platt, Sara Ahmed, Teresa Moraga, Tewodros Eguale:
  Evaluating the impact of an integrated computer-based decision support with person-centered analytics for the management of asthma in primary care: a randomized controlled trial. 773-783
• 
  Johanna I. Westbrook, Elena Gospodarevskaya, Ling Li, Katrina L. Richardson, David Roffe, Maureen Heywood, Richard O. Day, Nicholas Graves:
  Cost-effectiveness analysis of a hospital electronic medication management system. 784-793
• 
  George Hripcsak, David J. Albers, Adler J. Perotte:
  Parameterizing time in electronic health record studies. 794-804
• 
  Nathan J. Mortimer, Joel Rhee, Rebecca J. Guy, Andrew Hayen, Annie Y. S. Lau:
  A web-based personally controlled health management system increases sexually transmitted infection screening rates in young people: a randomized controlled trial. 805-814
• 
  Joshua E. Richardson, Joshua R. Vest, Cori M. Green, Lisa M. Kern, Rainu Kaushal:
  A needs assessment of health information technology for improving care coordination in three leading patient-centered medical homes. 815-820
• 
  Katherine K. Kim, Jill G. Joseph, Lucila Ohno-Machado:
  Comparison of consumers' views on electronic data sharing for healthcare and research. 821-830
• 
  Mette Heringa, Annemieke Floor, Willemijn M. Meijer, Peter A. G. M. De Smet, Marcel L. Bouvy:
  Nature and management of duplicate medication alerts. 831-837
• 
  Aude Motulsky, Claude Sicotte, Marie-Pierre Gagnon, Julie Payne-Gagnon, Julie-Alexandra Langué-Dubé, Christian M. Rochefort, Robyn Tamblyn:
  Challenges to the implementation of a nationwide electronic prescribing network in primary care: a qualitative study of users' perceptions. 838-848
• 
  Aziz Sheikh, Harpreet S. Sood, David W. Bates:
  Leveraging health information technology to achieve the "triple aim" of healthcare reform. 849-856
• 
  Stephanie K. Mueller, Kyla Giannelli, Robert Boxer, Jeffrey L. Schnipper:
  Readability of patient discharge instructions with and without the use of electronically available disease-specific templates. 857-863
• 
  Jessica S. Ancker, Lisa M. Kern, Alison Edwards, Sarah Nosal, Daniel M. Stein, Diane Hauser, Rainu Kaushal:
  Associations between healthcare quality and use of electronic health record functions in ambulatory care. 864-871
• 
  Adler J. Perotte, Rajesh Ranganath, Jamie S. Hirsch, David M. Blei, Noémie Elhadad:
  Risk prediction for chronic kidney disease progression using heterogeneous electronic health record data and time series analysis. 872-880
• 
  David Czock, Michael Konias, Hanna M. Seidling, Jens Kaltschmidt, Vedat Schwenger, Martin Zeier, Walter E. Haefeli:
  Tailoring of alerts substantially reduces the alert burden in computerized clinical decision support for drugs that should be avoided in patients with renal disease. 881-887
• 
  Samuel G. Smith, Rachel O'Conor, William Aitken, Laura M. Curtis, Michael S. Wolf, Mita Sanghavi Goel:
  Disparities in registration and use of an online patient portal among older adults: findings from the LitCog cohort. 888-895

Brief Communication

• 
  Syed Abdul Shabbir, Max Moldovan, Phung Anh Nguyen, Ruslan Enikeev, Wen-Shan Jian, Usman Iqbal, Min-Huei Hsu, Yu-Chuan Li:
  Profiling phenome-wide associations: a population-based observational study. 896-899
• 
  Dean F. Sittig, Daniel R. Murphy, Michael W. Smith, Elise M. Russo, Adam Wright, Hardeep Singh:
  Graphical display of diagnostic test results in electronic health Records: a comparison of 8 systems. 900-904
• 
  Anuj K. Dalal, Bailey M. Pesterev, Katyuska Eibensteiner, Lisa P. Newmark, Lipika Samal, Jeffrey M. Rothschild:
  Linking acknowledgement to action: closing the loop on non-urgent, clinically significant test results in the electronic health record. 905-908
• 
  John Heintzman, Miguel Marino, Megan J. Hoopes, Steffani R. Bailey, Rachel Gold, Jean P. O'Malley, Heather Angier, Christine Nelson, Erika Cottrell, Jennifer E. DeVoe:
  Supporting health insurance expansion: do electronic health records have valid insurance verification and enrollment data? 909-913

Perspectives

• 
  Arlene E. Chung, Ethan Basch:
  Incorporating the patient's voice into electronic health records through patient-reported outcomes as the "review of systems". 914-916
• 
  Brian E. Dixon, David A. Haggstrom, Michael Weiner:
  Implications for informatics given expanding access to care for Veterans and other populations. 917-920
• 
  George Hripcsak, Christopher B. Forrest, Patricia Flatley Brennan, William W. Stead:
  Informatics to support the IOM social and behavioral domains and measures. 921-924

Review

• 
  Alberto Moreno-Conde, David Moner, Wellington Dimas da Cruz, Marcelo R. Santos, José Alberto Maldonado, Montserrat Robles, Dipak Kalra:
  Clinical information modeling processes for semantic interoperability of electronic health records: systematic review and inductive analysis. 925-934

Messages from AMIA

• 
  Douglas B. Fridsma:
  Patients as first-order participants in health, health care, and research. 935

Volume 22, Number 5, September 2015

Highlights

• 
  Lucila Ohno-Machado:
  Mining electronic health record data: finding the gold nuggets. 937

Focus on Natural Language Processing

• 
  Rimma Pivovarov, Noémie Elhadad:
  Automated methods for the summarization of electronic health records. 938-947
• 
  Jan A. Kors, Simon Clematide, Saber A. Akhondi, Erik M. van Mulligen, Dietrich Rebholz-Schuhmann:
  A multilingual gold-standard corpus for biomedical concept recognition: the Mantra GSC. 948-956
• 
  Melissa M. Parker, Howard H. Moffet, Alyce Adams, Andrew J. Karter:
  An algorithm to identify medication nonpersistence using electronic pharmacy databases. 957-961
• 
  Erel Joffe, Emily J. Pettigrew, Jorge R. Herskovic, Charles F. Bearden, Elmer V. Bernstam:
  Expert guided natural language processing using one-class classification. 962-966
• 
  Yaoyun Zhang, Buzhou Tang, Min Jiang, Jingqi Wang, Hua Xu:
  Domain adaptation for semantic role labeling of clinical text. 967-979
• 
  Frank Meng, Craig A. Morioka:
  Automating the generation of lexical patterns for processing free text in clinical documents. 980-986
• 
  Judita Preiss, Mark Stevenson, Robert J. Gaizauskas:
  Exploring relation types for literature-based discovery. 987-992
• 
  Sheng Yu, Katherine P. Liao, Stanley Y. Shaw, Vivian S. Gainer, Susanne E. Churchill, Peter Szolovits, Shawn N. Murphy, Isaac S. Kohane, Tianxi Cai:
  Toward high-throughput phenotyping: unbiased automated feature extraction and selection from knowledge sources. 993-1000
• 
  Weiyi Sun, Anna Rumshisky, Özlem Uzuner:
  Normalization of relative and incomplete temporal expressions in clinical narratives. 1001-1008
• 
  Yuan Luo, Yu Xin, Ephraim P. Hochberg, Rohit Joshi, Özlem Uzuner, Peter Szolovits:
  Subgraph augmented non-negative tensor factorization (SANTF) for modeling clinical narrative text. 1009-1019

Research and Applications

• 
  Adam Wright, Francine L. Maloney, Matthew Wien, Lipika Samal, Srinivas Emani, Gianna Zuccotti:
  Assessing information system readiness for mitigating malpractice risk through simulation: results of a multi-site study. 1020-1028
• 
  Weiyi Xia, Raymond Heatherly, Xiaofeng Ding, Jiuyong Li, Bradley A. Malin:
  R-U policy frontiers for health data de-identification. 1029-1041
• 
  Mary Regina Boland, Zach Shahn, David Madigan, George Hripcsak, Nicholas P. Tatonetti:
  Birth month affects lifetime disease risk: a phenome-wide method. 1042-1053
• 
  Robert M. Cronin, Jacob P. VanHouten, Edward D. Siew, Svetlana K. Eden, Stephan D. Fihn, Christopher D. Nielson, Josh F. Peterson, Clifton R. Baker, T. Alp Ikizler, Theodore Speroff, Michael E. Matheny:
  National Veterans Health Administration inpatient risk stratification models for hospital-acquired acute kidney injury. 1054-1071
• 
  Abel N. Kho, John P. Cashy, Kathryn L. Jackson, Adam R. Pah, Satyender Goel, Jörn Boehnke, John Eric Humphries, Scott Duke Kominers, Bala Hota, Shannon A. Sims, Bradley A. Malin, Dustin D. French, Theresa Walunas, David O. Meltzer, Erin O. Kaleba, Roderick C. Jones, William L. Galanter:
  Design and implementation of a privacy preserving electronic health record linkage tool in Chicago. 1072-1080
• 
  Allison B. McCoy, Adam Wright, Dean F. Sittig:
  Cross-vendor evaluation of key user-defined clinical decision support capabilities: a scenario-based assessment of certified electronic health records with guidelines for future development. 1081-1088

Brief Communication

• 
  Jennifer M. Sanderson, Douglas C. Proops, Lisa Trieu, Eloisa Santos, Bruce Polsky, Shama Desai Ahuja:
  Increasing the efficiency and yield of a tuberculosis contact investigation through electronic data systems matching. 1089-1093
• 
  Christopher Powers, Meghan Hufstader Gabriel, William Encinosa, Farzad Mostashari, Julie Bynum:
  Meaningful use stage 2 e-prescribing threshold and adverse drug events in the Medicare Part D population with diabetes. 1094-1098

Perspective

• 
  Dean F. Sittig, Adam Wright:
  What makes an EHR "open" or interoperable? 1099-1101

AMIA Position Paper

• 
  Thomas H. Payne, Sarah Corley, Theresa A. Cullen, Tejal K. Gandhi, Linda Harrington, Gilad J. Kuperman, John E. Mattison, David McCallie, Clement J. McDonald, Paul C. Tang, William M. Tierney, Charlotte A. Weaver, Charlene R. Weir, Michael H. Zaroukian:
  Report of the AMIA EHR-2020 Task Force on the status and future direction of EHRs. 1102-1110

Messages from AMIA

• 
  Douglas B. Fridsma:
  A new vision for the National Library of Medicine. 1111

Erratum

• 
  Erratum. 1112

Volume 22, Number 6, November 2015

Highlights

• 
  Lucila Ohno-Machado:
  Trends in informatics and journal peer-review processes. 1113

Brief Communications on Big Data

• 
  Philip E. Bourne, Vivien Bonazzi, Michelle Dunn, Eric D. Green, Mark Guyer, George A. Komatsoulis, Jennie Larkin, Beth Russell:
  The NIH Big Data to Knowledge (BD2K) initiative. 1114
• 
  Saurabh Sinha, Jun Song, Richard M. Weinshilboum, C. Victor Jongeneel, Jiawei Han:
  KnowEnG: a knowledge engine for genomics. 1115-1119
• 
  Joy P. Ku, Jennifer L. Hicks, Trevor Hastie, Jure Leskovec, Christopher Ré, Scott L. Delp:
  The mobilize center: an NIH big data to knowledge center to advance human movement research and improve mobility. 1120-1125
• 
  Arthur W. Toga, Ian T. Foster, Carl Kesselman, Ravi K. Madduri, Kyle Chard, Eric W. Deutsch, Nathan D. Price, Gustavo Glusman, Benjamin D. Heavner, Ivo D. Dinov, Joseph Ames, John D. Van Horn, Roger Kramer, Leroy E. Hood:
  Big biomedical data as the key resource for discovery science. 1126-1131
• 
  Gregory F. Cooper, Ivet Bahar, Michael J. Becich, Panayiotis V. Benos, Jeremy M. Berg, Jeremy U. Espino, Clark Glymour, Rebecca Crowley Jacobson, Michelle Kienholz, Adrian V. Lee, Xinghua Lu, Richard Scheines:
  The center for causal discovery of biomedical knowledge from big data. 1132-1136
• 
  Santosh Kumar, Gregory D. Abowd, William T. Abraham, Mustafa al'Absi, J. Gayle Beck, Duen Horng Chau, Tyson Condie, David E. Conroy, Emre Ertin, Deborah Estrin, Deepak Ganesan, Cho Lam, Benjamin M. Marlin, Clay B. Marsh, Susan A. Murphy, Inbal Nahum-Shani, Kevin Patrick, James M. Rehg, Moushumi Sharmin, Vivek Shetty, Ida Sim, Bonnie Spring, Mani B. Srivastava, David W. Wetter:
  Center of excellence for mobile sensor data-to-knowledge (MD2K). 1137-1142
• 
  Benedict Paten, Mark Diekhans, Brian J. Druker, Stephen H. Friend, Justin Guinney, Nadine Gassner, Mitchell Guttman, W. James Kent, Patrick Mantey, Adam A. Margolin, Matt Massie, Adam M. Novak, Frank A. Nothaft, Lior Pachter, David A. Patterson, Maciej Smuga-Otto, Joshua M. Stuart, Laura J. van't Veer, Barbara J. Wold, David Haussler:
  The NIH BD2K center for big data in translational genomics. 1143-1147
• 
  Mark A. Musen, Carol A. Bean, Kei-Hoi Cheung, Michel Dumontier, Kim A. Durante, Olivier Gevaert, Alejandra N. González-Beltrán, Purvesh Khatri, Steven H. Kleinstein, Martin J. O'Connor, Yannick Pouliot, Philippe Rocca-Serra, Susanna-Assunta Sansone, Jeffrey A. Wiser:
  The center for expanded data annotation and retrieval. 1148-1152

Brief Communications

• 
  Dong Han, Shuang Wang, Chao Jiang, Xiaoqian Jiang, Hyeon-Eui Kim, Jimeng Sun, Lucila Ohno-Machado:
  Trends in biomedical informatics: automated topic analysis of JAMIA articles. 1153-1163
• 
  Charles E. Kahn Jr.:
  Integrating ontologies of rare diseases and radiological diagnosis. 1164-1168
• 
  Niam Yaraghi:
  An empirical analysis of the financial benefits of health information exchange in emergency departments. 1169-1172
• 
  Gil Alterovitz, Jeremy L. Warner, Peijin Zhang, Yishen Chen, Mollie Ullman-Cullere, David A. Kreda, Isaac S. Kohane:
  SMART on FHIR Genomics: facilitating standardized clinico-genomic apps. 1173-1178
• 
  Raj M. Ratwani, Rollin J. Fairbanks, A. Zachary Hettinger, Natalie C. Benda:
  Electronic health record usability: analysis of the user-centered design processes of eleven electronic health record vendors. 1179-1182
• 
  Niam Yaraghi, Raj Sharman, Ram D. Gopal, Ranjit Singh, Ram Ramesh:
  Drivers of information disclosure on health information exchange platforms: insights from an exploratory empirical study. 1183-1186

Research and Applications

• 
  Daniella Meeker, Xiaoqian Jiang, Michael E. Matheny, Claudiu Farcas, Michel D'Arcy, Laura Pearlman, Lavanya Nookala, Michele E. Day, Katherine K. Kim, Hyeoneui Kim, Aziz A. Boxwala, Robert E. El-Kareh, Grace Kuo, Frederic S. Resnic, Carl Kesselman, Lucila Ohno-Machado:
  A system to build distributed multivariate models and manage disparate data sharing policies: implementation in the scalable national network for effectiveness research. 1187-1195
• 
  Guan Wang, Kenneth Jung, Rainer Winnenburg, Nigam H. Shah:
  A method for systematic discovery of adverse drug events from clinical notes. 1196-1204
• 
  Daniel J. Vreeman, John Hook, Brian E. Dixon:
  Learning from the crowd while mapping to LOINC. 1205-1211
• 
  Chia-Lun Lu, Shuang Wang, Zhanglong Ji, Yuan Wu, Li Xiong, Xiaoqian Jiang, Lucila Ohno-Machado:
  WebDISCO: a web service for distributed cox model learning without patient-level data sharing. 1212-1219
• 
  Huan Mo, William K. Thompson, Luke V. Rasmussen, Jennifer A. Pacheco, Guoqian Jiang, Richard C. Kiefer, Qian Zhu, Jie Xu, Enid N. H. Montague, David S. Carrell, Todd Lingren, Frank D. Mentch, Yizhao Ni, Firas H. Wehbe, Peggy L. Peissig, Gerard Tromp, Eric B. Larson, Christopher G. Chute, Jyotishman Pathak, Joshua C. Denny, Peter Speltz, Abel N. Kho, Gail P. Jarvik, Cosmin Adrian Bejan, Marc S. Williams, Kenneth Borthwick, Terrie E. Kitchner, Dan M. Roden, Paul A. Harris:
  Desiderata for computable representations of electronic health records-driven phenotype algorithms. 1220-1230
• 
  Brian H. Shirts, Joseph S. Salama, Samuel J. Aronson, Wendy K. Chung, Stacy W. Gray, Lucia A. Hindorff, Gail P. Jarvik, Sharon E. Plon, Elena M. Stoffel, Peter Tarczy-Hornoch, Eliezer M. Van Allen, Karen E. Weck, Christopher G. Chute, Robert R. Freimuth, Robert Grundmeier, Andrea L. Hartzler, Rongling Li, Peggy L. Peissig, Josh F. Peterson, Luke V. Rasmussen, Justin B. Starren, Marc S. Williams, Casey Lynnette Overby:
  CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record. 1231-1242

Reviews

• 
  Thomas H. Payne, Lisa E. Hines, Raymond C. Chan, Seth Hartman, Joan Kapusnik-Uner, Alissa L. Russ, Bruce W. Chaffee, Christian Hartman, Victoria Tamis, Brian Galbreth, Peter A. Glassman, Shobha Phansalkar, Heleen van der Sijs, Sheila M. Gephart, Gordon Mann, Howard R. Strasberg, Amy J. Grizzle, Mary Brown, Gilad J. Kuperman, Chris Steiner, Amanda Sullins, Hugh Ryan, Michael A. Wittie, Daniel C. Malone:
  Recommendations to improve the usability of drug-drug interaction clinical decision support alerts. 1243-1250
• 
  Jie Xu, Luke V. Rasmussen, Pamela L. Shaw, Guoqian Jiang, Richard C. Kiefer, Huan Mo, Jennifer A. Pacheco, Peter Speltz, Qian Zhu, Joshua C. Denny, Jyotishman Pathak, William K. Thompson, Enid N. H. Montague:
  Review and evaluation of electronic health records-driven phenotype algorithm authoring tools for clinical and translational research. 1251-1260
• 
  Hojjat Salmasian, Tran H. Tran, Herbert S. Chase, Carol Friedman:
  Medication-indication knowledge bases: a systematic review and critical appraisal. 1261-1270

Case Report

• 
  Lewis J. Frey, Katherine A. Sward, Christopher J. L. Newth, Robinder G. Khemani, Martin E. Cryer, Julie L. Thelen, Rene Enriquez, Su Shaoyu, Murray M. Pollack, Rick E. Harrison, Kathleen L. Meert, Robert A. Berg, David L. Wessel, Thomas P. Shanley, Heidi Dalton, Joseph Carcillo, Tammara L. Jenkins, J. Michael Dean:
  Virtualization of open-source secure web services to support data exchange in a pediatric critical care research network. 1271-1276

Messages from Amia

• 
  Douglas B. Fridsma:
  Moving beyond the physician's EHR. 1277