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spaTyper 1.0

Software version: ()
Database version: ()

Sequencing Platform Select the sequencing platform used to generate the uploaded reads. (Note: Select 'Assembled Genome' if you are uploading preassembled reads)
Due to CPU requriements for assembly this tool will only allow preassembled reads as input
Assembled Genome/Contigs*

View the version history of this server.

IMPORTANT NOTE:
To avoid problems caused by file names, we only allow a limited selection of ASCII characters (see below).

a-z
A-Z
0-9
_ (underscore)
- (hyphen)
. (full stop)

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REFERENCES

1. Camacho C, Coulouris G, Avagyan V, Ma N, Papadopoulos J, Bealer K, Madden TL. BLAST+: architecture and applications. BMC Bioinformatics 2009; 10:421.

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CITATIONS

For publication of results, please cite:

• Comparing whole-genome sequencing with Sanger sequencing for spa typing of methicillin-resistant Staphylococcus aureus.
  Bartels MD, Petersen A, Worning P, Nielsen JB, Larner-Svensson H, Johansen HK, Andersen LP, Jarløv JO, Boye K, Larsen AR, Westh H.
  J. Clin. Microbiol. 2014. 52(12): 4305-8.
  View the abstract

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