MLST 2.0

Software version: 2.0.9 (2022-05-11)
Database version: (2023-06-19)
MLST allele sequence and profile data is obtained from PubMLST.org.

Momentanously, the species Lactococcus Lactis is unavailable.

Select MLST configuration

Please note that for four organisms, two or three different MLST schemes are available:

Acinetobacter baumannii (Acinetobacter baumannii #1 [1], Acinetobacter baumannii #2 [2]).
Escherichia coli (Escherichia coli #1 [4], Escherichia coli #2 [5]).
Pasteurella multocida (Pasteurella multocida #1 (RIRDC), Pasteurella multocida #2 (multihost)).
Leptospira (Leptospira #1, Leptospira #2, Leptospira #3).

Note: Campylobacter coli and Campylobacter jejuni are considered together.

Select min. depth for an allele

Select type of data input
Only data from one single isolate should be uploaded. If raw sequencing reads are uploaded KMA will be used for mapping. KMA supports the following sequencing platforms: Illumina, Ion Torrent, Roche 454, SOLiD, Oxford Nanopore, and PacBio.

Please note that "Assembled Genomes/Contigs" should be selected, if you have already assembled your short sequencing reads into one continuos genome or into several contigs. It is indifferent which type of short sequence reads were used to produce the genome/contigs.

IMPORTANT NOTE:
To avoid problems caused by file names, we only allow a limited selection of ASCII characters (see below).

a-z
A-Z
0-9
_ (underscore)
- (hyphen)
. (full stop)