msig: An R Package for Exploring Molecular Signatures Database
The Molecular Signatures Database ('MSigDB') is one of the most widely
used and comprehensive databases of gene sets for performing gene set
enrichment analysis <doi:10.1016/j.cels.2015.12.004>. The 'msig' package provides
you with powerful, easy-to-use and flexible query functions for the 'MsigDB'
database.
There are 2 query modes in the 'msig' package: online query and local query.
Both queries contain 2 steps: gene set name and gene.
The online search is divided into 2 modes: registered search and
non-registered browse. For registered search, email that you registered should
be provided.
Local queries can be made from local database, which can be updated by msig_update() function.
| Version: |
1.0 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
do, rvest, xml2, set, plyr, httr, jsonlite, utils, kableExtra, tmcn, crayon, dplyr, stringr, sqldf |
| Published: |
2021-06-29 |
| DOI: |
10.32614/CRAN.package.msig |
| Author: |
Jing Zhang [aut, cre],
Zhi Jin [aut] |
| Maintainer: |
Jing Zhang <zj391120 at 163.com> |
| License: |
GPL-2 |
| NeedsCompilation: |
no |
| CRAN checks: |
msig results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=msig
to link to this page.