Selection of DNA aptamers that bind to influenza A viruses with high affinity and broad subtype specificity

Biochem Biophys Res Commun. 2014 Jan 3;443(1):37-41. doi: 10.1016/j.bbrc.2013.11.041. Epub 2013 Nov 19.

Abstract

Many cases of influenza are reported worldwide every year. The influenza virus often acquires new antigenicity, which is known as antigenic shift; this results in the emergence of new virus strains, for which preexisting immunity is not found in the population resulting in influenza pandemics. In the event a new strain emerges, diagnostic tools must be developed rapidly to detect the novel influenza strain. The generation of high affinity antibodies is costly and takes time; therefore, an alternative detection system, aptamer detection, provides a viable alternative to antibodies as a diagnostic tool. In this study, we developed DNA aptamers that bind to HA1 proteins of multiple influenza A virus subtypes by the SELEX procedure. To evaluate the binding properties of these aptamers using colorimetric methods, we developed a novel aptamer-based sandwich detection method employing our newly identified aptamers. This novel sandwich enzyme-linked aptamer assay successfully detected the H5N1, H1N1, and H3N2 subtypes of influenza A virus with almost equal sensitivities. These findings suggest that our aptamers are attractive candidates for use as simple and sensitive diagnostic tools that need sandwich system for detecting the influenza A virus with broad subtype specificities.

Keywords: AIV; DNA aptamer; ELAA; Enzyme-linked aptamer assay (ELAA); HA; HEK; Influenza virus; MDCK; Madin-Darby canine kidney; NA; SELEX; SPR; avian influenza virus; enzyme-linked aptamer assay; hemagglutinin; human embryonic kidney; neuraminidase; surface plasmon resonance; systematic evolution of ligands by exponential enrichment.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aptamers, Nucleotide / chemistry
  • Aptamers, Nucleotide / isolation & purification*
  • Base Sequence
  • DNA / chemistry*
  • Humans
  • Influenza A virus / chemistry*
  • Influenza A virus / isolation & purification
  • Influenza, Human / diagnosis*
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • SELEX Aptamer Technique
  • Surface Plasmon Resonance

Substances

  • Aptamers, Nucleotide
  • DNA