Identification of a novel VP4 genotype carried by a serotype G5 porcine rotavirus strain

Virology. 2006 Mar 15;346(2):301-11. doi: 10.1016/j.virol.2005.11.001. Epub 2005 Dec 20.

Abstract

Rotavirus genome segment 4, encoding the spike outer capsid VP4 protein, of a porcine rotavirus (PoRV) strain, 134/04-15, identified in Italy was sequenced, and the predicted amino acid (aa) sequence was compared to those of all known VP4 (P) genotypes. The aa sequence of the full-length VP4 protein of the PoRV strain 134/04-15 showed aa identity values ranging from 59.7% (bovine strain KK3, P8[11]) to 86.09% (porcine strain A46, P[13]) with those of the remaining 25 P genotypes. Moreover, aa sequence analysis of the corresponding VP8* trypsin cleavage fragment revealed that the PoRV strain 134/04-15 shared low identity, ranging from 37.52% (bovine strain 993/83, P[17]) to 73.6% (porcine strain MDR-13, P[13]), with those of the remaining 25 P genotypes. Phylogenetic relationships showed that the VP4 of the PoRV strain 134/04-15 shares a common evolutionary origin with porcine P[13] and lapine P[22] rotavirus strains. Additional sequence analyses of the VP7, VP6, and NSP4 genes of the PoRV strain 134/04-15 revealed the highest VP7 aa identity (95.9%) to G5 porcine strains, a porcine-like VP6 within VP6 genogroup I, and a Wa-like (genotype B) NSP4, respectively. Altogether, these results indicate that the PoRV strain 134/04-15 should be considered as prototype of a new VP4 genotype, P[26], and provide further evidence for the vast genetic and antigenic diversity of group A rotaviruses.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Antigens, Viral / genetics
  • Capsid Proteins / chemistry
  • Capsid Proteins / genetics*
  • Diarrhea / veterinary
  • Diarrhea / virology
  • Genetic Variation
  • Genotype
  • Glycoproteins / genetics
  • Italy
  • Molecular Sequence Data
  • Phylogeny
  • Rotavirus / classification*
  • Rotavirus / genetics*
  • Rotavirus / isolation & purification
  • Rotavirus Infections / veterinary*
  • Rotavirus Infections / virology
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid
  • Serotyping
  • Swine
  • Swine Diseases / virology*
  • Toxins, Biological / genetics
  • Viral Nonstructural Proteins / genetics

Substances

  • Antigens, Viral
  • Capsid Proteins
  • Glycoproteins
  • NS28 protein, rotavirus
  • Toxins, Biological
  • VP4 protein, Rotavirus
  • VP6 protein, Rotavirus
  • VP7 protein, Rotavirus
  • Viral Nonstructural Proteins

Associated data

  • GENBANK/DQ061053
  • GENBANK/DQ062572