HotSprint: database of computational hot spots in protein interfaces (Q43033206)

12 November 2017

HotSprint: database of computational hot spots in protein interfaces (English)

1 reference

12 November 2017

computational biology

1 reference

0 references

2

1 reference

12 November 2017

4

1 reference

12 November 2017

Emre Guney

1

0 references

Özlem Keskin

series ordinal

3

object named as

Ozlem Keskin

1 reference

12 November 2017

language of work or name

English

0 references

publication date

24 October 2007

1 reference

12 November 2017

Nucleic Acids Research

1 reference

12 November 2017

36

1 reference

12 November 2017

Database issue

1 reference

12 November 2017

D662-6

1 reference

Protein-protein interaction hotspots carved into sequences

12 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

Targeting protein-protein interactions with small molecules: challenges and perspectives for computational binding epitope detection and ligand finding

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

Anchor residues in protein-protein interactions

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

A new, structurally nonredundant, diverse data set of protein-protein interfaces and its implications

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

Prediction of functional sites by analysis of sequence and structure conservation

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

Protein-protein interactions: structurally conserved residues distinguish between binding sites and exposed protein surfaces

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

ConSurf: identification of functional regions in proteins by surface-mapping of phylogenetic information

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

A simple physical model for binding energy hot spots in protein-protein complexes

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

Evolutionary rate in the protein interaction network

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

Computational alanine scanning of the 1:1 human growth hormone-receptor complex

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

Unraveling hot spots in binding interfaces: progress and challenges

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

Conservation of polar residues as hot spots at protein interfaces

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

Multiple modes of peptide recognition by the PTB domain of the cell fate determinant Numb

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

Structure of a Numb PTB domain-peptide complex suggests a basis for diverse binding specificity

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

Anatomy of hot spots in protein interfaces

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

VMD: visual molecular dynamics

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

A hot spot of binding energy in a hormone-receptor interface

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

RASMOL: biomolecular graphics for all

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

Database of homology-derived protein structures and the structural meaning of sequence alignment

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

Hot regions in protein--protein interactions: the organization and contribution of structurally conserved hot spot residues

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

Protein-protein interactions: hot spots and structurally conserved residues often locate in complemented pockets that pre-organized in the unbound states: implications for docking

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

Protein-protein interactions; coupling of structurally conserved residues and of hot spots across interfaces. Implications for docking

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

Structure-based method for analyzing protein-protein interfaces

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

The binding interface database (BID): a compilation of amino acid hot spots in protein interfaces

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

ASEdb: a database of alanine mutations and their effects on the free energy of binding in protein interactions

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238999

18 Systematic mutational analyses of protein-protein interfaces

16 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17959648

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKM813

1 reference

12 November 2017

journals/nar/GuneyTKG08

1 reference

DBLP Dataset 2021-01-02

release_jsu3ydjcorbopj3hae3cza7mca

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/jsu3ydjcorbopj3hae3cza7mca

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

12 November 2017

PubMed publication ID

17959648

1 reference