SNAPPI-DB: a database and API of Structures, iNterfaces and Alignments for Protein-Protein Interactions. (Q33268113)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17202171%20AND%20SRC:MED&resulttype=core&format=json

23 December 2019

title

SNAPPI-DB: a database and API of Structures, iNterfaces and Alignments for Protein-Protein Interactions (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17202171%20AND%20SRC:MED&resulttype=core&format=json

protein-protein interaction

23 December 2019

main subject

database

0 references

1 reference

1

1 reference

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23 December 2019

Timothy J Roberts

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17202171%20AND%20SRC:MED&resulttype=core&format=json

23 December 2019

Geoffrey J. Barton

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17202171%20AND%20SRC:MED&resulttype=core&format=json

23 December 2019

author name string

Thomas P Walsh

series ordinal

2

1 reference

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23 December 2019

language of work or name

English

0 references

publication date

1 January 2007

1 reference

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23 December 2019

published in

Nucleic Acids Research

1 reference

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23 December 2019

volume

35

1 reference

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23 December 2019

issue

Database issue

1 reference

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23 December 2019

page(s)

D580-9

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SCOPPI: a structural classification of protein-protein interfaces

23 December 2019

cites work

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PRISM: protein interactions by structural matching

21 June 2018

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Prediction of protein-protein interactions by combining structure and sequence conservation in protein interfaces

21 June 2018

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Critical evaluation of the JDO API for the persistence and portability requirements of complex biological databases

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3did: interacting protein domains of known three-dimensional structure

21 June 2018

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The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis

21 June 2018

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21 June 2018

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Using convex hulls to extract interaction interfaces from known structures.

21 June 2018

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IntAct: an open source molecular interaction database

21 June 2018

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21 June 2018

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SCOP database in 2004: refinements integrate structure and sequence family data

21 June 2018

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E-MSD: an integrated data resource for bioinformatics.

21 June 2018

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The Pfam protein families database

21 June 2018

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Development of human protein reference database as an initial platform for approaching systems biology in humans

21 June 2018

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Diversity of protein-protein interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

The GRID: the General Repository for Interaction Datasets

21 June 2018

1 reference

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The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

21 June 2018

1 reference

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STRING: a database of predicted functional associations between proteins

21 June 2018

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MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading

21 June 2018

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Interrogating protein interaction networks through structural biology

21 June 2018

1 reference

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MINT: a Molecular INTeraction database

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

Functional organization of the yeast proteome by systematic analysis of protein complexes

21 June 2018

1 reference

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DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions

21 June 2018

1 reference

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The Pfam protein families database

21 June 2018

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SCOP database in 2002: refinements accommodate structural genomics

21 June 2018

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The Protein Data Bank: unifying the archive

21 June 2018

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21 June 2018

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Global analysis of protein activities using proteome chips

21 June 2018

1 reference

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Predicting protein--protein interactions from primary structure

21 June 2018

1 reference

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DIP: The Database of Interacting Proteins: 2001 update

21 June 2018

1 reference

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BIND--a data specification for storing and describing biomolecular interactions, molecular complexes and pathways.

21 June 2018

1 reference

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DIP: the database of interacting proteins

21 June 2018

1 reference

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Assigning genomic sequences to CATH

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

21 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

Detecting protein function and protein-protein interactions from genome sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

The atomic structure of protein-protein recognition sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

Protein-protein crystal-packing contacts

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

CATH--a hierarchic classification of protein domain structures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

Pfam: a comprehensive database of protein domain families based on seed alignments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

Principles of protein-protein interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

SCOP: a structural classification of proteins database for the investigation of sequences and structures

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

A novel genetic system to detect protein-protein interactions

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

The structure of protein-protein recognition sites

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

Multiple protein sequence alignment from tertiary structure comparison: assignment of global and residue confidence levels

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

The nature of the accessible and buried surfaces in proteins

21 June 2018

1 reference

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PSIbase: a database of Protein Structural Interactome map (PSIMAP).

21 June 2018

1 reference

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PIBASE: a comprehensive database of structurally defined protein interfaces

31 October 2018

1 reference

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Prediction of protein-protein interaction sites using support vector machines

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

Learning to predict protein-protein interactions from protein sequences

31 October 2018

1 reference

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Integrative approach for computationally inferring protein domain interactions

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

InterPreTS: protein interaction prediction through tertiary structure.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

Principles of protein-protein interactions

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

SNAPper: gene order predicts gene function.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

Mining literature for protein-protein interactions.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

Discriminating between homodimeric and monomeric proteins in the crystalline state

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

Protein domain interfaces: characterization and comparison with oligomeric protein interfaces

31 October 2018

1 reference

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PQS: a protein quaternary structure file server

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

Prediction of protein-protein interaction sites using patch analysis

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

Biological Units and their Effect upon the Properties and Prediction of Protein–Protein Interactions

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899103

The Relationship Between Sequence and Interaction Divergence in Proteins

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17202171

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKL836

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17202171%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/JeffersonWRB07

23 December 2019

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17202171%20AND%20SRC:MED&resulttype=core&format=json

23 December 2019

PubMed publication ID

17202171

1 reference