Programmed ribosomal frameshifting in decoding the SARS-CoV genome (Q28304877)

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7 January 2020

title

Programmed ribosomal frameshifting in decoding the SARS-CoV genome (English)

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7 January 2020

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Replicase polyprotein 1a

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replicase polyprotein 1ab [SARS-Cov]

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author

Pavel Baranov

1

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7 January 2020

John F Atkins

5

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7 January 2020

author name string

Clark M Henderson

2

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7 January 2020

Christine B Anderson

3

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7 January 2020

Raymond F Gesteland

4

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7 January 2020

Michael T Howard

6

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7 January 2020

language of work or name

English

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publication date

1 February 2005

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7 January 2020

number of pages

13

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based on heuristic

inferred from page(s)

published in

Virology

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7 January 2020

volume

332

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7 January 2020

issue

2

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7 January 2020

page(s)

498-510

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Recoding: translational bifurcations in gene expression.

7 January 2020

cites work

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

P-site tRNA is a crucial initiator of ribosomal frameshifting.

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Specificity of RNA-RNA helix recognition

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

An extended signal involved in eukaryotic -1 frameshifting operates through modification of the E site tRNA.

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Influence of the stacking potential of the base 3' of tandem shift codons on -1 ribosomal frameshifting used for gene expression.

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Structure and function of the stimulatory RNAs involved in programmed eukaryotic-1 ribosomal frameshifting

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Characterization of an efficient coronavirus ribosomal frameshifting signal: requirement for an RNA pseudoknot

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Mutational analysis of the RNA pseudoknot component of a coronavirus ribosomal frameshifting signal

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Mutational analysis of the "slippery-sequence" component of a coronavirus ribosomal frameshifting signal

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Structural and functional studies of retroviral RNA pseudoknots involved in ribosomal frameshifting: nucleotides at the junction of the two stems are important for efficient ribosomal frameshifting.

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

A characteristic bent conformation of RNA pseudoknots promotes -1 frameshifting during translation of retroviral RNA.

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Equine arteritis virus is not a togavirus but belongs to the coronaviruslike superfamily

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Structure, stability and function of RNA pseudoknots involved in stimulating ribosomal frameshifting

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

A dual-luciferase reporter system for studying recoding signals

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Translational suppression in retroviral gene expression

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

An 'elaborated' pseudoknot is required for high frequency frameshifting during translation of HCV 229E polymerase mRNA.

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Analysis of the roles of tRNA structure, ribosomal protein L9, and the bacteriophage T4 gene 60 bypassing signals during ribosome slippage on mRNA.

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Prokaryotic ribosomes recode the HIV-1 gag-pol-1 frameshift sequence by an E/P site post-translocation simultaneous slippage mechanism

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Sequence specificity of aminoglycoside-induced stop condon readthrough: potential implications for treatment of Duchenne muscular dystrophy

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Identification of a new antizyme mRNA +1 frameshifting stimulatory pseudoknot in a subset of diverse invertebrates and its apparent absence in intermediate species

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Characterization of ribosomal frameshifting in HIV-1 gag-pol expression

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

A mutant RNA pseudoknot that promotes ribosomal frameshifting in mouse mammary tumor virus

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Conformation of a non-frameshifting RNA pseudoknot from mouse mammary tumor virus

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Specific mutations in a viral RNA pseudoknot drastically change ribosomal frameshifting efficiency

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Evidence for an RNA pseudoknot loop-helix interaction essential for efficient -1 ribosomal frameshifting

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

The Genome sequence of the SARS-associated coronavirus

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Reprogrammed genetic decoding in cellular gene expression.

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

The role of RNA pseudoknot stem 1 length in the promotion of efficient -1 ribosomal frameshifting

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

RNA tertiary interactions in the large ribosomal subunit: the A-minor motif

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Programmed -1 ribosomal frameshifting in the SARS coronavirus

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

The structure of an RNA pseudoknot that causes efficient frameshifting in mouse mammary tumor virus

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Ribosome structure: revisiting the connection between translational accuracy and unconventional decoding

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Biochemical identification of A-minor motifs within RNA tertiary structure by interference analysis

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Minor groove RNA triplex in the crystal structure of a ribosomal frameshifting viral pseudoknot

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Mutational analysis of the RNA pseudoknot involved in efficient ribosomal frameshifting in simian retrovirus-1

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

RNA pseudoknots: translational frameshifting and readthrough on viral RNAs

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Mechanisms and enzymes involved in SARS coronavirus genome expression

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

The path of messenger RNA through the ribosome

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Mfold web server for nucleic acid folding and hybridization prediction

11 September 2020

1 reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7111862

Identification of a New Antizyme mRNA +1 Frameshifting Stimulatory Pseudoknot in a Subset of Diverse Invertebrates and its Apparent Absence in Intermediate Species

11 September 2020

1 reference

Crossref

https://api.crossref.org/works/10.1016%2FJ.VIROL.2004.11.038

10.1016/J.VIROL.2004.11.038

7 January 2021

Identifiers

DOI

2 references

Consolidated OpenCitations Corpus – April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15680415%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

1 reference

Consolidated OpenCitations Corpus – April 2017

PMC publication ID

7111862

0 references

2 references

Consolidated OpenCitations Corpus – April 2017