Long noncoding RNA transcriptome of plants (Q28082013)

Huan Wang

series ordinal

2

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language of work or name

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April 2015

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Plant Biotechnology Journal

published in

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volume

13

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issue

3

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page(s)

319-28

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The Arabidopsis thaliana MHX gene includes an intronic element that boosts translation when localized in a 5' UTR intron

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Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs

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Long noncoding RNA genes: conservation of sequence and brain expression among diverse amniotes

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Intron splicing suppresses RNA silencing in Arabidopsis.

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Effect of 5'UTR introns on gene expression in Arabidopsis thaliana.

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Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state

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Antisense COOLAIR mediates the coordinated switching of chromatin states at FLC during vernalization

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Characterization of stress-responsive lncRNAs in Arabidopsis thaliana by integrating expression, epigenetic and structural features

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XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast.

21 January 2018

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A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice

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An endogenous, systemic RNAi pathway in plants

21 January 2018

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Identification of nuclear dicing bodies containing proteins for microRNA biogenesis in living Arabidopsis plants

21 January 2018

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The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator

21 January 2018

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Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins

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Arabidopsis FIERY1, XRN2, and XRN3 are endogenous RNA silencing suppressors

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Regulation of microRNA biogenesis

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An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions.

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Chromatin regulation of flowering.

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Role of chromatin modification in flowering-time control.

21 January 2018

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Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA.

21 January 2018

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A strand-specific switch in noncoding transcription switches the function of a Polycomb/Trithorax response element

21 January 2018

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An expressed pseudogene regulates the messenger-RNA stability of its homologous coding gene

21 January 2018

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Regulation of gene expression in plants through miRNA inactivation

21 January 2018

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Dealing with pervasive transcription.

21 January 2018

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Translating the Histone Code

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SCREAM/ICE1 and SCREAM2 specify three cell-state transitional steps leading to arabidopsis stomatal differentiation.

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A pathogen-inducible endogenous siRNA in plant immunity

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Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

21 January 2018

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Aberrant mRNA transcripts and the nonsense-mediated decay proteins UPF2 and UPF3 are enriched in the Arabidopsis nucleolus.

21 January 2018

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Widespread transcription at neuronal activity-regulated enhancers

21 January 2018

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The role of Mediator in small and long noncoding RNA production in Arabidopsis thaliana.

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A small modulatory dsRNA specifies the fate of adult neural stem cells

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21 January 2018

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21 January 2018

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21 January 2018

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Epigenetic regulation by long noncoding RNAs

21 January 2018

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21 January 2018

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The Arabidopsis RNA-binding protein FCA requires a lysine-specific demethylase 1 homolog to downregulate FLC.

21 January 2018

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Negative correlation between expression level and evolutionary rate of long intergenic noncoding RNAs

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The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression

21 January 2018

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21 January 2018

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Functional consequences of splicing of the antisense transcript COOLAIR on FLC transcription

21 January 2018

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Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript

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Arabidopsis transcriptome analysis under drought, cold, high-salinity and ABA treatment conditions using a tiling array

21 January 2018

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Circular RNAs are a large class of animal RNAs with regulatory potency

21 January 2018

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Target mimics: an embedded layer of microRNA-involved gene regulatory networks in plants

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High-resolution metabolic mapping of cell types in plant roots

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21 January 2018

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Widespread bidirectional promoters are the major source of cryptic transcripts in yeast

21 January 2018

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Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality.

21 January 2018

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Genome-wide analysis of endogenous abscisic acid-mediated transcription in dry and imbibed seeds of Arabidopsis using tiling arrays

21 January 2018

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Alcohol use among American Indian adolescents: the role of culture in pathological drinking

21 January 2018

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21 January 2018

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Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

21 January 2018

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Requirements for intron-mediated enhancement of gene expression in Arabidopsis.

21 January 2018

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Diamonds in the rough: mRNA-like non-coding RNAs

21 January 2018

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A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?

21 January 2018

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Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types

21 January 2018

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Cell-type specific features of circular RNA expression

21 January 2018

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Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rod-like structures

21 January 2018

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RNA-mediated response to heat shock in mammalian cells

21 January 2018

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The molecular basis of vernalization: the central role of FLOWERING LOCUS C (FLC)

21 January 2018

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Genome-wide identification and functional prediction of novel and drought-responsive lincRNAs in Populus trichocarpa.

21 January 2018

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The autonomous pathway: epigenetic and post-transcriptional gene regulation in the control of Arabidopsis flowering time

21 January 2018

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FY is an RNA 3' end-processing factor that interacts with FCA to control the Arabidopsis floral transition.

21 January 2018

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Imaging bacterial protein expression using genetically encoded RNA sensors.

21 January 2018

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RNA 3' processing functions of Arabidopsis FCA and FPA limit intergenic transcription

21 January 2018

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New approaches for sensing metabolites and proteins in live cells using RNA.

21 January 2018

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Using Spinach-based sensors for fluorescence imaging of intracellular metabolites and proteins in living bacteria.

21 January 2018

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R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus.

21 January 2018

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Coding-independent regulation of the tumor suppressor PTEN by competing endogenous mRNAs

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21 January 2018

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Splicing promotes rapid and efficient mRNA export in mammalian cells

21 January 2018

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21 January 2018

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Transcriptome profiling of early developing cotton fiber by deep-sequencing reveals significantly differential expression of genes in a fuzzless/lintless mutant.

21 January 2018

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A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

21 January 2018

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Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12336

Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12336

Genomic features and regulatory roles of intermediate-sized non-coding RNAs in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12336

Antisense-mediated FLC transcriptional repression requires the P-TEFb transcription elongation factor

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12336

Sequential recruitment of the endoplasmic reticulum and chloroplasts for plant potyvirus replication

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12336

A strategy for probing the function of noncoding RNAs finds a repressor of NFAT

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12336

Genome-wide landscape of polyadenylation in Arabidopsis provides evidence for extensive alternative polyadenylation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12336

Widespread long noncoding RNAs as endogenous target mimics for microRNAs in plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12336

Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12336

Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12336

ncRNA- and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12336

Long noncoding RNAs: fresh perspectives into the RNA world

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12336

A novel procedure for the localization of viral RNAs in protoplasts and whole plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12336

Systematic identification and evolutionary features of rhesus monkey small nucleolar RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12336

Genome-wide analysis of plant nat-siRNAs reveals insights into their distribution, biogenesis and function.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12336

Complementary sequence-mediated exon circularization

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12336

Genome-wide screening and functional analysis identify a large number of long noncoding RNAs involved in the sexual reproduction of rice

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12336

Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12336

Detecting small plant peptides using SPADA (Small Peptide Alignment Discovery Application)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12336

Arabidopsis transportin1 is the nuclear import receptor for the circadian clock-regulated RNA-binding protein AtGRP7.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12336

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FPBI.12336

21 January 2018

Identifiers

DOI

10.1111/PBI.12336

1 reference

Consolidated OpenCitations Corpus – April 2017

1 reference

Consolidated OpenCitations Corpus – April 2017

PubMed publication ID

25615265

1 reference

Consolidated OpenCitations Corpus – April 2017