Discriminating between HuR and TTP binding sites using the k-spectrum kernel method. (Q36319763)

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Language	Label	Description	Also known as
English	Discriminating between HuR and TTP binding sites using the k-spectrum kernel method.	scientific article

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13 March 2020

Discriminating between HuR and TTP binding sites using the k-spectrum kernel method (English)

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13 March 2020

Shweta Bhandare

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13 March 2020

Robin D. Dowell

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13 March 2020

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Debra S Goldberg

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13 March 2020

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23 March 2017

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13 March 2020

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13 March 2020

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13 March 2020

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13 March 2020

e0174052

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13 March 2020

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23 March 2017

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1 reference

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PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins

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ARED 3.0: the large and diverse AU-rich transcriptome.

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MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model

1 reference

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CONREAL: conserved regulatory elements anchored alignment algorithm for identification of transcription factor binding sites by phylogenetic footprinting

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5 December 2018

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10.1371/JOURNAL.PONE.0174052

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13 March 2020

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13 March 2020

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13 March 2020

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