Improved free-energy parameters for predictions of RNA duplex stability (Q29618274)

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scientific article (publication date: December 1986)

Language	Label	Description	Also known as
English	Improved free-energy parameters for predictions of RNA duplex stability	scientific article (publication date: December 1986)

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scholarly article

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28 September 2019

Improved free-energy parameters for predictions of RNA duplex stability (English)

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=2432595

30 April 2017

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28 September 2019

Ryszard Kierzek

2

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28 September 2019

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S M Freier

1

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28 September 2019

J A Jaeger

3

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28 September 2019

N Sugimoto

4

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28 September 2019

M H Caruthers

5

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28 September 2019

T Neilson

6

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28 September 2019

D H Turner

7

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28 September 2019

language of work or name

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30 April 2017

publication date

1 December 1986

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28 September 2019

Proceedings of the National Academy of Sciences of the United States of America

2 references

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30 April 2017

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28 September 2019

83

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30 April 2017

Europe PubMed Central

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28 September 2019

24

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30 April 2017

Europe PubMed Central

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28 September 2019

9373-9377

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28 September 2019

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

1 reference

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30 April 2017

Improved Estimation of Secondary Structure in Ribonucleic Acids

1 reference

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30 April 2017

Small changes in free energy assignments for unpaired bases do not affect predicted secondary structures in single stranded RNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

3 June 2018

An energy model that predicts the correct folding of both the tRNA and the 5S RNA molecules

1 reference

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3 June 2018

Detailed analysis of the higher-order structure of 16S-like ribosomal ribonucleic acids

1 reference

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3 June 2018

Secondary structure of the Tetrahymena ribosomal RNA intervening sequence: structural homology with fungal mitochondrial intervening sequences

1 reference

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3 June 2018

Some simple computational methods to improve the folding of large RNAs

1 reference

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3 June 2018

Computer-aided prediction of RNA secondary structures

1 reference

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3 June 2018

Conformational Transitions in Viroids and Virusoids: Comparison of Results from Energy Minimization Algorithm and from Experimental Data

1 reference

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3 June 2018

Thermodynamic Studies of RNA Stability

1 reference

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3 June 2018

Self-complementary oligoribonucleotides: effects of helix defects and guanylic acid-cytidylic acid base pairs

1 reference

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3 June 2018

Helix formation by d(TA) oligomers. II. Analysis of the helix-coli transitions of linear and circular oligomers

1 reference

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3 June 2018

Estimation of Secondary Structure in Ribonucleic Acids

1 reference

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3 June 2018

Free energy of imperfect nucleic acid helices. 3. Small internal loops resulting from mismatches.

1 reference

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3 June 2018

Theory of oligonucleotide stabilization. I. The effect of single-strand stacking.

1 reference

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3 June 2018

Free energy of imperfect nucleic acid helices. II. Small hairpin loops

1 reference

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3 June 2018

Stability of ribonucleic acid double-stranded helices

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=387140

3 June 2018

Solvent effects on the stability of A7U7p.

1 reference

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3 June 2018

Calorimetric and spectroscopic investigation of the helix-to-coil transition of a ribo-oligonucleotide: rA7U7

1 reference

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3 June 2018

Calorimetric determination of the heat capacity changes associated with the conformational transitions of polyriboadenylic acid and polyribouridylic acid

1 reference

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3 June 2018

The 3′ terminus of 16S rRNA: secondary structure and interaction with ribosomal protein S1

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3 June 2018

Globin mRNA Sequences: Analysis of Base Pairing and Evolutionary Implications

1 reference

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3 June 2018

Improved free energies for G.C base-pairs.

1 reference

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20 June 2018

Free energy of imperfect nucleic acid helices. I. The bulge defect

1 reference

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12 December 2020

based on heuristic

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The Conformational Transitions in Yeast tRNAPhe as Studied with tRNAPhe Fragments

1 reference

https://pubmed.ncbi.nlm.nih.gov/2432595

12 December 2020

based on heuristic

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Conformational transitions in tRNAAsp(brewer's yeast). Thermodynamic, kinetic, and enzymic measurements on oligonucleotide fragments and the intact molecule

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Thermodynamics of (dG-dC)3 double-helix formation in water and deuterium oxide

1 reference

https://pubmed.ncbi.nlm.nih.gov/2432595

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The effects of base sequence and dangling bases on the stability of short ribonucleic acid duplexes

1 reference

https://pubmed.ncbi.nlm.nih.gov/2432595

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA and RNA oligomer thermodynamics: The effect of mismatched bases on double‐helix stability

1 reference

https://pubmed.ncbi.nlm.nih.gov/2432595

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Base-stacking and base-pairing contributions to helix stability: thermodynamics of double-helix formation with CCGG, CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp

1 reference

https://pubmed.ncbi.nlm.nih.gov/2432595

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Contributions of dangling end stacking and terminal base-pair formation to the stabilities of XGGCCp, XCCGGp, XGGCCYp, and XCCGGYp helixes

1 reference

https://pubmed.ncbi.nlm.nih.gov/2432595

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Free energy contributions of G.U and other terminal mismatches to helix stability

1 reference

https://pubmed.ncbi.nlm.nih.gov/2432595

12 December 2020

based on heuristic

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Stability of XGCGCp, GCGCYp, and XGCGCYp helixes: an empirical estimate of the energetics of hydrogen bonds in nucleic acids

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Energetics of internal GU mismatches in ribooligonucleotide helixes

1 reference

https://pubmed.ncbi.nlm.nih.gov/2432595

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Heat of the reaction forming the three-stranded poly (A + 2U) complex

1 reference

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12 December 2020

based on heuristic

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Relaxation kinetics of dimer formation by self complementary oligonucleotides

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1073/PNAS.83.24.9373

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

Europe PubMed Central

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28 September 2019

1986PNAS...83.9373F

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OpenCitations bibliographic resource ID

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

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3 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=2432595

30 April 2017

Consolidated OpenCitations Corpus – April 2017

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28 September 2019

PubMed publication ID

3 references

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30 April 2017

Consolidated OpenCitations Corpus – April 2017

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Europe PubMed Central

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28 September 2019

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