DNA physical properties determine nucleosome occupancy from yeast to fly. (Q36740102)

16 August 2017

DNA physical properties determine nucleosome occupancy from yeast to fly. (English)

1 reference

16 August 2017

Vincent Miele

1

1 reference

16 August 2017

Cédric Vaillant

2

1 reference

16 August 2017

Yves d'Aubenton-Carafa

3

1 reference

16 August 2017

Claude Thermes

4

1 reference

16 August 2017

Thierry Grange

5

1 reference

16 August 2017

language of work or name

English

0 references

publication date

17 May 2008

1 reference

16 August 2017

Nucleic Acids Research

1 reference

16 August 2017

36

1 reference

16 August 2017

11

1 reference

16 August 2017

3746-3756

1 reference

Chromatin remodelling at promoters suppresses antisense transcription

16 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

A high-resolution atlas of nucleosome occupancy in yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

Nucleosome positioning signals in genomic DNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

A novel roll-and-slide mechanism of DNA folding in chromatin: implications for nucleosome positioning

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

Histone replacement marks the boundaries of cis-regulatory domains

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

Flexibility and constraint in the nucleosome core landscape of Caenorhabditis elegans chromatin

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

A genomic code for nucleosome positioning

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

Role of linker histone in chromatin structure and function: H1 stoichiometry and nucleosome repeat length

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

Genomewide analysis of nucleosome density histone acetylation and HDAC function in fission yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

The dynamics of chromatin remodeling at promoters

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

Genome-scale identification of nucleosome positions in S. cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

Global nucleosome occupancy in yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

The structure of DNA in the nucleosome core

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

Role of DNA sequence in nucleosome stability and dynamics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

Higher-order structure of chromatin and chromosomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

Preferential accessibility of the yeast his3 promoter is determined by a general property of the DNA sequence, not by specific elements

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

Crystal structure of the nucleosome core particle at 2.8 A resolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

Artificial nucleosome positioning sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

Chromatin as an essential part of the transcriptional mechanim

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

Sequence periodicities in chicken nucleosome core DNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

ChIP-Seq data reveal nucleosome architecture of human promoters.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

Genome-scale profiling of histone H3.3 replacement patterns.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

Evidence for nucleosome depletion at active regulatory regions genome-wide

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441789

Extracting DNA twist rigidity from experimental supercoiling data

5 September 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/18487627

12 December 2020

Intrinsic histone-DNA interactions and low nucleosome density are important for preferential accessibility of promoter regions in yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/18487627

12 December 2020

Nucleosome positions predicted through comparative genomics

1 reference

https://pubmed.ncbi.nlm.nih.gov/18487627

12 December 2020

Nucleosome sliding via TBP DNA binding in vivo

1 reference

https://pubmed.ncbi.nlm.nih.gov/18487627

12 December 2020

From the sequence to the superstructural properties of DNAs

1 reference

https://pubmed.ncbi.nlm.nih.gov/18487627

12 December 2020

Identifiers

DOI

10.1093/NAR/GKN262

1 reference

release_vtia4m3lujb2nhcxxq3pqb2sja

16 August 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/vtia4m3lujb2nhcxxq3pqb2sja

24 November 2022

mapped directly with Wikidata item

1 reference

16 August 2017

PubMed publication ID

18487627

1 reference