Repository details
AmoebaDB
Name of repository
AmoebaDB
Repository URL
Subject(s)
Description
AmoebaDB belongs to the EuPathDB family of databases and is an integrated genomic and functional genomic database for Entamoeba and Acanthamoeba parasites. In its first iteration (released in early 2010), AmoebaDB contains the genomes of three Entamoeba species (see below). AmoebaDB integrates whole genome sequence and annotation and will rapidly expand to include experimental data and environmental isolate sequences provided by community researchers . The database includes supplemental bioinformatics analyses and a web interface for data-mining.
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
- MIR:00000148
- FAIRsharing_doi:10.25504/FAIRsharing.swbypy
Repository type(s)
- disciplinary
Mission statement for designated community
Research data repository language(s)
- English
Data and/or service provider
- data provider
Institution name
Additional name(s)
- NIH
- NIAID
- BRC
Country
Type(s) of responsibility
- general
- funding
Type of institution
non-profit
Institution name
Identifier(s)
- ROR:02bjhwk41
- RRID:SCR_004954
Country
Type(s) of responsibility
- technical
Type of institution
non-profit
Institution name
Identifier(s)
- ROR:00b30xv10
- RRID:SCR_004275
Country
Type(s) of responsibility
- technical
Type of institution
non-profit
Policies (2)
Policy Name
Policy Name
Database access
Type of access to research data repository
open
Data access (2)
Type of access to data
open
Type of access to data
embargoed
Data licenses (1)
DataLicense
Data upload (1)
Type of data upload
restricted
Data upload restriction type(s)
- other
Data upload license (1)
Data upload license name
Persistent identifier system(s)
- none
Name of the repository software
- CKAN
Versioning
yes
Data citation guideline
Enhanced Publication
unknown
Quality management
unknown
Application programming interfaces (2)
Metadata standards (1)
Remarks
Entry date
2017-09-05
Last update
2023-10-04
Cite this re3data.org record:
re3data.org: AmoebaDB; editing status 2023-10-04; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3PX9Q last accessed: 2024-09-04- Current projects
- EOSC FAIR-IMPACT
- re3data COREF
-
To the extent possible under law,
re3data.org
has waived all copyright and related or neighboring rights to
the database entries of re3data.org.
-
Except where otherwise noted, content on this site is licensed under a
Creative Commons Attribution 4.0 International License
.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2024-09-04
