Repository details

RDP

Name of repository
RDP
Additional name(s)
  • Ribosomal Database Project
Repository URL
http://rdp.cme.msu.edu/index.jsp
Subject(s)
Description
<<<!!!<<< The RDP website is no longer available. A stand-alone version of the RDP Classifier is available on Sorceforge https://sourceforge.net/projects/rdp-classifier/. Instructions for installing a command-line version of RDP Tools can be found at Dr. J.Quensen's Website https://john-quensen.com/tutorials/tutorial-1/ and https://jfq3.gitbook.io/rdptools-docker/rdptools-docker/readme. >>>!!!>>>
Contact
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
  • RRID:nif-0000-03404
  • RRID:OMICS_01513
  • RRID:SCR_006633
Repository size
3.356.809 aligned and annotated 16S rRNA sequences; 125.525 Fungal 28S rRNA sequences
Repository type(s)
  • disciplinary
Mission statement for designated community
http://rdp.cme.msu.edu/index.jsp
Research data repository language(s)
  • English
Data and/or service provider
  • data provider
Institution name
Michigan State University, Center for Microbial Ecology
Contact(s)
Country
United States
Type(s) of responsibility
  • general
  • technical
Type of institution
non-profit
Institution name
NIH Human Microbiome Project
Contact(s)
Country
United States
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution name
NIH, National Institute of Environmental Health Sciences, Superfund Research Program
Additional name(s)
  • NIEHS, SRP
Contact(s)
Country
United States
Type(s) of responsibility
  • funding
Type of institution
non-profit
Institution name
U.S. Department of Energy, Biological and Environmental Research Program
Additional name(s)
  • U.S. DOE, BER
Country
United States
Type(s) of responsibility
  • funding
Type of institution
non-profit

Policies (1)

Policy Name
Disclaimer

Database access

Type of access to research data repository
open

Data access (2)

Type of access to data
open
Type of access to data
closed

Data licenses (1)

DataLicense
CC

Data upload (1)

Type of data upload
restricted
Data upload restriction type(s)
  • registration
Persistent identifier system(s)
  • none
Name of the repository software
  • unknown
Versioning
yes
Data citation guideline
http://rdp.cme.msu.edu/misc/citation.jsp
Enhanced Publication
unknown
Quality management
yes

Application programming interfaces (1)

API type
SOAP

Remarks

Remarks
Description: "RDP provides quality-controlled, aligned and annotated Bacterial and Archaeal 16S rRNA sequences, and Fungal 28S rRNA sequences, and a suite of analysis tools to the scientific community."
Entry date
2017-05-23
Last update
2024-01-15
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Cite this re3data.org record:

re3data.org: RDP; editing status 2024-01-15; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3C087 last accessed: 2024-11-10