V-pipe

  • Population genetics
  • Genomics
  • Software tool
V-pipe is the bioinformatics pipeline that integrates various open-source software packages for assessing viral genetic diversity from next-generation sequencing (NGS) data derived from intra-host virus populations.

šŸ’” V-pipe enables reliable and comparable viral pathogen genomics and epidemiological studies and facilitates clinical diagnostics of viruses.

You might also be interested in

      • Transcriptomics
      • Software tool

    ASAP

    Web-based, cooperative portal for single-cell data analyses
      • Transcriptomics
      • Database

    PolyAsite

    Database of curated RNA polyadenylation sites
      • Text mining & Machine learning
      • Database
      • Software tool

    SIBiLS

    Personalized Information Retrieval in biomedical literature
      • Genomics
      • Evolution biology
      • , Population genetics
      • Software tool

    Nextclade

    Clade assignment, mutation calling & QC for virus sequences
      • Evolution & Phylogeny
      • Software tool

    raxmlGUI

    raxmlGUI 2.0 is a graphical user interface to RAxML
      • Genes & Genomes
      • Proteins & Proteomes
      • Structural Biology
      • Database

    ViralZone

    Fact sheets about viruses linked to sequence databases
      • Glycomics
      • Database

    SugarBind

    Pathogen Sugar-Binding Database
      • Genomics
      • Population genetics
      • Software tool

    V-pipe SARS-CoV-2

    V-pipe pipeline applied to SARS-CoV-2 sequencing data
      • Text mining & Machine learning
      • Software tool

    COVTriage

    Rank the COVID-19 literature according to COVoc ontology
      • Genes & Genomes
      • Evolution biology
      • Software tool

    BEAST2

    Bayesian evolutionary analysis by sampling trees
      • Genes & Genomes
      • Evolution biology
      • Software tool

    GenSpectrum

    Real-time pathogen genomic sequence analysis
      • Evolution & Phylogeny
      • Database

    OrthoDB

    Ortholog evolutionary and functional annotations
      • Proteins & Proteomes
      • Glycomics
      • Database
      • Software tool

    GlyConnect

    Integrated data platform to study glycosylation
      • Genomics
      • Database

    EPD

    Eukaryotic Promoter Database
      • Genomics
      • , Transcriptomics
      • Systems Biology
      • Database

    SwissRegulon

    Database of genome-wide annotations of regulatory sites
      • Genomics
      • Software tool

    MADAP

    Clustering tool of genomic sites
      • Genes & Genomes
      • Systems Biology
      • Software tool

    CREMA

    CREMA: Cis-Regulatory Element Motif Activities