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Replies
Comment: How to reverse complement some elements of a DNAStringSet
by
Christine Jones
•
0
Fantastic, thank you
Comment: When running contrasts, does it use normalized read counts?
by
Katherine
•
0
Ok, so the comment I was given where they said DeSeq2 should be with normalized counts is incorrect.
the ```normalized_counts``` variable …
Answer: How to reverse complement some elements of a DNAStringSet
by
James W. MacDonald
67k
You should always try the vectorized method first, rather than looping.
```
> myFasta[myFasta_rc] <- reverseComplement(myFasta[myFasta_…
Answer: When running contrasts, does it use normalized read counts?
by
James W. MacDonald
67k
A contrast is a comparison of two or more coefficients. When you run `nbiomWaldTest` you are fitting the GLM and estimating coefficients. T…
Comment: Too much data for Diffbind
by
Ou, Jianhong
★
1.3k
Just in case if somebody still want to apply summits greater than 0 and got the same error, you can filter out the peaks with start positio…
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