Bioconductor R3cseq

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r3cseq bam trimmed

4.6 years ago ch_el ▴ 10

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1.1k

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r3Cseq

updated 7.4 years ago by izzy.yichao.cai ▴ 10 • written 8.7 years ago by manduchi ▴ 10

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942

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4Cseq r3cseq

8.3 years ago tlgolan • 0

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1.0k

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r3cseq 4c

9.3 years ago Theo ▴ 10

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908

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r3Cseq

9.5 years ago felix.klein ▴ 150

5 results • Page 1 of 1

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Comment: limma technical repeat correction by Gordon Smyth 51k

I have never analysed SomaScan data, so I cannot make any specific recommendations about how to analyse such data. I have however analysed …

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela by Gordon Smyth 51k

voom() does not transform the data to be homoscedastic. Quite the opposite, it computes precision weights that reflect the mean-variance tr…

Answer: Package needs internet access by James W. MacDonald 67k

It's going to need internet access. When you switch to NCBI seqlevels, you are calling this function ``` .fetch_chrom_sizes_from_UCSC_d…

Answer: List of DEGs belonging to an Agilent-single color microarray experiment using Li by Gordon Smyth 51k

The first coefficient in your linear model appears to be an intercept term. In this context, you should not be using `method="global"` beca…

Comment: Package needs internet access by firestar ▴ 20

Updated with more code.

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Dotplot from enricher outputting very few genes

Answer: [How to construct a model.matrix ]

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