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TnSeq as ZINB? Alternatives in R?
DESeq2 R edgeR Python TnSeq
updated 22 months ago by • 0 • written 23 months ago by ▴ 90
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Job: Bioconductor Core developers group opening
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2.1 years ago Vincent J. Carey, Jr. 6.7k
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Change the interval of bed file
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updated 2.7 years ago by 67k • written 2.7 years ago by • 0
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python and R
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3.4 years ago Ewa • 0
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DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
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Load data with rhdf5
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Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
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updated 5.2 years ago by ▴ 30 • written 5.2 years ago by ▴ 10
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5.2 years ago Fred Hutch (Recruiting) ▴ 40
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5.5 years ago Shamith.Samarajiwa ▴ 180
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5.7 years ago careers • 0
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6.2 years ago l.brown ▴ 10
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Python functionality feature request
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updated 6.2 years ago by 25k • written 6.2 years ago by • 0
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6.6 years ago EMBL Recruitment • 0
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6.7 years ago ematsen ▴ 20
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7.5 years ago Shamith.Samarajiwa ▴ 180
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8.2 years ago clif.duhn • 0
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8.5 years ago • updated 8.2 years ago clif.duhn • 0
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8.7 years ago Doe, Aimee ▴ 40
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Convertion of indexed bam file to tsv file format
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updated 9.0 years ago by 16k • written 9.0 years ago by • 0
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DEXSeq analysis of alternative splicing: error 'SAM optional field tag NH not found'
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9.0 years ago Fiona ▴ 70
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seq2pathway error on Mac OS X
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9.1 years ago termanini ▴ 10
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23 results • Page 1 of 1
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Comment: How to reverse complement some elements of a DNAStringSet by Christine Jones • 0
Fantastic, thank you
Comment: When running contrasts, does it use normalized read counts? by Katherine • 0
Ok, so the comment I was given where they said DeSeq2 should be with normalized counts is incorrect. the ```normalized_counts``` variable …
Answer: How to reverse complement some elements of a DNAStringSet by James W. MacDonald 67k
You should always try the vectorized method first, rather than looping. ``` > myFasta[myFasta_rc] <- reverseComplement(myFasta[myFasta_…
Answer: When running contrasts, does it use normalized read counts? by James W. MacDonald 67k
A contrast is a comparison of two or more coefficients. When you run `nbiomWaldTest` you are fitting the GLM and estimating coefficients. T…
Comment: Too much data for Diffbind by Ou, Jianhong ★ 1.3k
Just in case if somebody still want to apply summits greater than 0 and got the same error, you can filter out the peaks with start positio…
Votes
Comment: featureCounts fails to load annotation file
Answer: How to reverse complement some elements of a DNAStringSet
Answer: KEGGgraph result difference
Answer: What should be the normalization protocol for RNA seq data for WGCNA?
What should be the normalization protocol for RNA seq data for WGCNA?
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