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News:
European Bioconductor Conference 2023 planning
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Maria Doyle
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Join the Technical Advisory Board
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17 months ago
Maria Doyle
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News:
Final List of Deprecated Package Bioc 3.9
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written 5.6 years ago by
shepherl
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News:
Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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17 months ago
Maria Doyle
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News:
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2.0 years ago • updated 23 months ago
Peter Hickey
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News:
BioCAsia Virtual Meeting, 15-18 October 2020
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written 4.1 years ago by
Matthew Ritchie
▴ 1000
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News:
New Bioconductor Community Advisory Board Members for 2021
bioconductoroversight
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BiocVersion
3.5 years ago
Matthew Ritchie
▴ 1000
4
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News:
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bioconductoroversight
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BiocVersion
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updated 3.6 years ago by
aedin
• 0 • written 3.7 years ago by
Matthew Ritchie
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News:
Early career researchers: nominate to present your work at BVCN virtual conference on microbiome research
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Conference
3.7 years ago
Matthew Ritchie
▴ 1000
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1.2k
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News:
Community engagement and outreach award
bioconductor
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written 4.3 years ago by
shepherl
4.0k
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847
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News:
SUPPORT SITE UPGRADE TODAY -- PLEASE REFRAIN FROM POSTING
support site
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4.0 years ago
shepherl
4.0k
2
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3
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1.2k
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DESeq2 multiple groups comparison issues, incorrect log2FC results in a small proportion of genes
deseq2
updated 3.9 years ago by
Michael Love
42k • written 4.0 years ago by
helenhuang.math
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1
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2
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1.6k
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News:
Final List of Deprecated Packages for Bioc3.12
annotation
software
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deprecated
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4.0 years ago
shepherl
4.0k
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News:
BridgeDbR devel package upgraded to BridgeDb 3
bridgedbr
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4.0 years ago
egon.willighagen
▴ 10
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News:
Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
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4.0 years ago
kayla.interdonato
▴ 160
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News:
Project-wide Code of Conduct statement for Bioconductor
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Bioconductor
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4.0 years ago
Laurent Gatto
1.6k
3
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News:
List of Deprecated Packages for Bioc3.12
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News
4.1 years ago • updated 4.0 years ago
shepherl
4.0k
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News:
New Package Submission Deadline for Bioc Release 3.12
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4.1 years ago
shepherl
4.0k
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Bioconductor Release 3.12 Schedule Posted
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4.1 years ago
shepherl
4.0k
4
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News:
ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
EnsDb
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AnnotationHub
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4.1 years ago
Johannes Rainer
★ 2.1k
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News:
Ensembl 101 hase been released
Ensembl
BioMart
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4.2 years ago
mchakiachvili
▴ 20
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News:
James Taylor foundation: scholarships to Biological Data Science 2020 at CSHL
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4.2 years ago
Kasper Daniel Hansen
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3
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News:
New Package Submission Workflow Updates!
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bioconductor
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updated 3.2 years ago by
jonathan.dekermanjian
• 0 • written 4.3 years ago by
shepherl
4.0k
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News:
Bioc2020 - Call for BOF/HAK/FAQ Sections
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4.5 years ago • updated 4.3 years ago
shepherl
4.0k
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News:
Bioc2020 - Call for BOF/HAK/FAQ Sections Still Open
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4.3 years ago
shepherl
4.0k
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942
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News:
Award Nomination Deadline Monday June 15th!
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4.3 years ago
shepherl
4.0k
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874
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News:
Scientific or Informatic Technology Advancement Award!
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4.3 years ago
shepherl
4.0k
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News:
Long-term contribution award
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4.3 years ago
shepherl
4.0k
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907
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News:
Documentation Bioconductor Award
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4.4 years ago
shepherl
4.0k
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0
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997
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News:
List of Deprecated Packages for Bioc3.12
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News
4.4 years ago
shepherl
4.0k
0
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0
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935
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News:
New Package Bioconductor Award
bioconductor
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4.4 years ago
shepherl
4.0k
0
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0
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868
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News:
Support Site Bioconductor Award
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4.4 years ago
shepherl
4.0k
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892
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News:
Bioc2020 - Virtual Conference Registration
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4.4 years ago
shepherl
4.0k
0
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0
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854
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News:
Updated annotation packages
annotation
news
News
4.4 years ago
kayla.interdonato
▴ 160
4
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1
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3.9k
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News:
Nominations for Bioconductor Awards!
Bioc2020
Bioconductor
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4.5 years ago • updated 4.4 years ago
shepherl
4.0k
0
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0
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787
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News:
Single Package Builder / New Package Submission
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News
4.4 years ago
shepherl
4.0k
0
votes
1
reply
996
views
News:
Bioconductor Technical Advisory Board Nominees, 2020
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News
written 4.4 years ago by
Martin Morgan
25k
4
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0
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859
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News:
Public Calendar of Events
Bioconductor
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News
4.4 years ago
shepherl
4.0k
1
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1.3k
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News:
ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
ensembl
annotation
ensembldb
News
4.4 years ago
Johannes Rainer
★ 2.1k
1
vote
1
reply
1.1k
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News:
Issues with annotation packages
annotation
news
release
News
4.4 years ago
kayla.interdonato
▴ 160
0
votes
3
replies
1.2k
views
News:
Final List of Deprecated Packages for Bioc3.11
software
annotation
experiment data
deprecated
News
updated 4.5 years ago by
kayla.interdonato
▴ 160 • written 4.5 years ago by
shepherl
4.0k
0
votes
0
replies
1.1k
views
News:
Bioconductor 3.11 OrgDb and TxDb packages now available
annotation
news
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News
4.5 years ago
kayla.interdonato
▴ 160
1
vote
0
replies
910
views
News:
Ensembl 100 has been released
biomart
ensembl
e100
mart
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News
4.5 years ago
Thomas Maurel
▴ 800
4
votes
0
replies
927
views
News:
Bioconductor 3.11 is Released!
software
bioconductor
release
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News
4.5 years ago
shepherl
4.0k
0
votes
4
replies
1.4k
views
News:
BridgeDb build fails due to website unavailability
bridgedbr
News
4.9 years ago • updated 4.5 years ago
egon.willighagen
▴ 10
0
votes
0
replies
1.0k
views
News:
Import Deadlines for RELEASE 3.11
release
devel
deadline
bioconductor
News
4.5 years ago
shepherl
4.0k
10
votes
0
replies
2.9k
views
News:
Professor James Taylor
in memoriam
News
4.5 years ago
Martin Morgan
25k
0
votes
0
replies
999
views
News:
Last Day to Submit New Packages for Bioconductor Release 3.11
deadline
new submission
bioconductor
release
News
4.5 years ago
shepherl
4.0k
2
votes
0
replies
978
views
News:
Bioconductor Community Advisory Board Members
news
bioconductor oversight
community
News
4.5 years ago
Matthew Ritchie
▴ 1000
0
votes
1
reply
1.3k
views
News:
New Package and New Docker Image Submission Deadline for Bioc Release 3.11
release
package submission
docker
deadline
News
4.6 years ago • updated 4.5 years ago
shepherl
4.0k
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Comment: How to reverse complement some elements of a DNAStringSet
by
Christine Jones
• 0
Fantastic, thank you
Comment: When running contrasts, does it use normalized read counts?
by
Katherine
• 0
Ok, so the comment I was given where they said DeSeq2 should be with normalized counts is incorrect. the ```normalized_counts``` variable …
Answer: How to reverse complement some elements of a DNAStringSet
by
James W. MacDonald
67k
You should always try the vectorized method first, rather than looping. ``` > myFasta[myFasta_rc] <- reverseComplement(myFasta[myFasta_…
Answer: When running contrasts, does it use normalized read counts?
by
James W. MacDonald
67k
A contrast is a comparison of two or more coefficients. When you run `nbiomWaldTest` you are fitting the GLM and estimating coefficients. T…
Comment: Too much data for Diffbind
by
Ou, Jianhong
★ 1.3k
Just in case if somebody still want to apply summits greater than 0 and got the same error, you can filter out the peaks with start positio…
Votes
Comment: featureCounts fails to load annotation file
Answer: How to reverse complement some elements of a DNAStringSet
Answer: KEGGgraph result difference
Answer: What should be the normalization protocol for RNA seq data for WGCNA?
What should be the normalization protocol for RNA seq data for WGCNA?
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