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Maximum parsimony protein assembly/inference
rforproteomics
proteomics
msnid
msnbase
4.5 years ago
daniel.magnus.bader
▴ 50
4
votes
5
replies
2.3k
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How to convert a xlsx data file to MSnSet format?
msnbase
msmstests
proteomics
lc-ms/ms
msnID
updated 5.7 years ago by
Laurent Gatto
1.6k • written 5.7 years ago by
fgol
▴ 10
0
votes
14
replies
2.7k
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Pbase: AddIdentificationData. How can I use MSnId objects (filtered psm) to build the Proteins database
pbase
MsnId
mzid
msnbase
updated 8.6 years ago by
Sebastian Gibb
▴ 80 • written 8.7 years ago by
viswanathan.raghuram
• 0
3 results • Page
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Comment: How to reverse complement some elements of a DNAStringSet
by
Christine Jones
• 0
Fantastic, thank you
Comment: When running contrasts, does it use normalized read counts?
by
Katherine
• 0
Ok, so the comment I was given where they said DeSeq2 should be with normalized counts is incorrect. the ```normalized_counts``` variable …
Answer: How to reverse complement some elements of a DNAStringSet
by
James W. MacDonald
67k
You should always try the vectorized method first, rather than looping. ``` > myFasta[myFasta_rc] <- reverseComplement(myFasta[myFasta_…
Answer: When running contrasts, does it use normalized read counts?
by
James W. MacDonald
67k
A contrast is a comparison of two or more coefficients. When you run `nbiomWaldTest` you are fitting the GLM and estimating coefficients. T…
Comment: Too much data for Diffbind
by
Ou, Jianhong
★ 1.3k
Just in case if somebody still want to apply summits greater than 0 and got the same error, you can filter out the peaks with start positio…
Votes
Comment: featureCounts fails to load annotation file
Answer: How to reverse complement some elements of a DNAStringSet
Answer: KEGGgraph result difference
Answer: What should be the normalization protocol for RNA seq data for WGCNA?
What should be the normalization protocol for RNA seq data for WGCNA?
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