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News:
Bioconductor Package Download Rate Limitation (HTTP 429)
downloads
http429
http
Bioconductor
11 weeks ago
shepherl
4.0k
0
votes
2
replies
2.2k
views
R/Rstudio: using rtracklayer to import bigwig files from http works with MacOS but not with Windows
import.bw
rtracklayer
Windows
http
2.9 years ago
sla
• 0
1
vote
5
replies
4.8k
views
RStudio vs R: using rtracklayer to import bigwig files from http works in R but not in RStudio.
import.bw
rtracklayer
http
RStudio
updated 3.9 years ago by
Michael Lawrence
★ 11k • written 3.9 years ago by
Søren
• 0
4
votes
2
replies
1.3k
views
GenomicDataCommons request timeouts when cases() %>% ... %>% results_all()
genomicdatacommons
tcga
gdc
rest
http
updated 5.7 years ago by
Sean Davis
21k • written 5.7 years ago by
mk
▴ 20
0
votes
4
replies
1.9k
views
Gviz IdeogramTrack fails with Error: failed to load HTTP resource
gviz
gviz-package
rtracklayer
http
6.7 years ago
enricoferrero
▴ 660
3
votes
6
replies
3.1k
views
function getAE from ArrayExpress needs update because EBI has switched to https
arrayexpress
xml
rcurl
http
EBI
updated 7.0 years ago by
Wolfgang Huber
★ 13k • written 7.0 years ago by
Bernd Klaus
▴ 610
2
votes
7
replies
2.1k
views
Bioconductor Installation may be insecure against man-in-the-middle attacks
security
http
source
installation
updated 9.4 years ago by
Dan Tenenbaum
★ 8.2k • written 9.4 years ago by
will.townes
• 0
7 results • Page
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Comment: How to reverse complement some elements of a DNAStringSet
by
Christine Jones
• 0
Fantastic, thank you
Comment: When running contrasts, does it use normalized read counts?
by
Katherine
• 0
Ok, so the comment I was given where they said DeSeq2 should be with normalized counts is incorrect. the ```normalized_counts``` variable …
Answer: How to reverse complement some elements of a DNAStringSet
by
James W. MacDonald
67k
You should always try the vectorized method first, rather than looping. ``` > myFasta[myFasta_rc] <- reverseComplement(myFasta[myFasta_…
Answer: When running contrasts, does it use normalized read counts?
by
James W. MacDonald
67k
A contrast is a comparison of two or more coefficients. When you run `nbiomWaldTest` you are fitting the GLM and estimating coefficients. T…
Comment: Too much data for Diffbind
by
Ou, Jianhong
★ 1.3k
Just in case if somebody still want to apply summits greater than 0 and got the same error, you can filter out the peaks with start positio…
Votes
Comment: featureCounts fails to load annotation file
Answer: How to reverse complement some elements of a DNAStringSet
Answer: KEGGgraph result difference
Answer: What should be the normalization protocol for RNA seq data for WGCNA?
What should be the normalization protocol for RNA seq data for WGCNA?
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James W. MacDonald
67k
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shepherl
4.0k
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Gordon Smyth
51k
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bioinformaticssrm2011
• 0
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sukeshinik5
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